Wall clock time and date at job start Wed Apr 1 2020 04:26:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42897 * 114.00306 * 2 1 4 4 C 1.50698 * 109.47387 * 179.97438 * 3 2 1 5 5 N 1.29432 * 124.80399 * 90.02240 * 4 3 2 6 6 C 1.30938 * 117.36410 * 179.97438 * 5 4 3 7 7 C 1.35660 * 114.19060 * 0.02562 * 6 5 4 8 8 C 1.46686 * 126.13156 * 179.97438 * 7 6 5 9 9 O 1.21686 * 119.99745 * 352.36735 * 8 7 6 10 10 N 1.34772 * 120.00075 * 172.64175 * 8 7 6 11 11 C 1.46498 * 120.00378 * 1.93925 * 10 8 7 12 12 C 1.50697 * 109.47457 * 82.40928 * 11 10 8 13 13 H 1.08001 * 119.99586 * 0.02562 * 12 11 10 14 14 C 1.37870 * 120.00102 * 180.02562 * 12 11 10 15 15 N 1.31517 * 119.99853 * 180.02562 * 14 12 11 16 16 Si 1.86804 * 120.00146 * 359.97438 * 14 12 11 17 17 H 1.48497 * 109.47115 * 90.00209 * 16 14 12 18 18 H 1.48501 * 109.46965 * 209.99933 * 16 14 12 19 19 H 1.48498 * 109.46843 * 330.00286 * 16 14 12 20 20 C 1.46511 * 119.99851 * 181.93806 * 10 8 7 21 21 C 1.50698 * 109.47124 * 89.99943 * 20 10 8 22 22 C 1.38229 * 119.61887 * 94.72760 * 21 20 10 23 23 C 1.38628 * 119.16222 * 179.75158 * 22 21 20 24 24 C 1.38671 * 118.41824 * 0.51136 * 23 22 21 25 25 C 1.38181 * 119.16643 * 359.73280 * 24 23 22 26 26 N 1.31855 * 119.61762 * 275.00134 * 21 20 10 27 27 S 1.70953 * 124.80478 * 270.29566 * 4 3 2 28 28 H 1.08996 * 109.47281 * 59.99658 * 1 2 3 29 29 H 1.08997 * 109.47254 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.47125 * 300.00392 * 1 2 3 31 31 H 1.09006 * 109.47365 * 59.99387 * 3 2 1 32 32 H 1.08999 * 109.46645 * 300.00389 * 3 2 1 33 33 H 1.08002 * 122.90365 * 180.02562 * 6 5 4 34 34 H 1.08996 * 109.47286 * 202.41333 * 11 10 8 35 35 H 1.09007 * 109.46807 * 322.41026 * 11 10 8 36 36 H 0.97005 * 119.99674 * 180.02562 * 15 14 12 37 37 H 1.09000 * 109.46930 * 210.00189 * 20 10 8 38 38 H 1.09002 * 109.47017 * 329.99808 * 20 10 8 39 39 H 1.08004 * 120.41471 * 359.97438 * 22 21 20 40 40 H 1.07996 * 120.78724 * 180.25786 * 23 22 21 41 41 H 1.08005 * 120.41592 * 179.70525 * 24 23 22 42 42 H 1.07994 * 119.62256 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1864 0.0006 5 7 4.2495 1.1283 -1.0618 6 6 5.5438 1.0262 -0.8917 7 6 5.9329 0.9950 0.4075 8 6 7.3121 0.8856 0.8948 9 8 8.2191 0.6736 0.1117 10 7 7.5741 1.0144 2.2105 11 6 6.4771 1.2213 3.1591 12 6 5.8540 -0.1068 3.5041 13 1 6.2372 -1.0143 3.0613 14 6 4.7948 -0.1634 4.3848 15 7 4.2514 -1.3225 4.6862 16 14 4.1325 1.4062 5.1512 17 1 3.0620 1.9654 4.2873 18 1 3.5771 1.1047 6.4951 19 1 5.2319 2.3960 5.2805 20 6 8.9562 0.9475 2.6922 21 6 9.5547 2.3305 2.6949 22 6 9.5279 3.0843 3.8533 23 6 10.0858 4.3533 3.8465 24 6 10.6428 4.8230 2.6667 25 6 10.6284 4.0143 1.5464 26 7 10.0931 2.8097 1.5908 27 16 4.4841 1.1024 1.4047 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.6886 1.8464 0.8900 32 1 1.6886 1.8463 -0.8900 33 1 6.2411 0.9716 -1.7146 34 1 6.8634 1.6877 4.0653 35 1 5.7250 1.8695 2.7091 36 1 3.5060 -1.3622 5.3057 37 1 8.9689 0.5441 3.7047 38 1 9.5387 0.3007 2.0361 39 1 9.0811 2.6881 4.7532 40 1 10.0830 4.9632 4.7378 41 1 11.0820 5.8088 2.6238 42 1 11.0606 4.3725 0.6238 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000285499936.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:39 Heat of formation + Delta-G solvation = 20.428703 kcal Electronic energy + Delta-G solvation = -28090.387785 eV Core-core repulsion = 24163.513542 eV Total energy + Delta-G solvation = -3926.874243 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.21346 -39.35329 -38.56470 -37.44595 -35.37501 -33.14816 -32.36358 -31.83191 -30.80585 -28.60573 -28.18700 -26.43980 -25.69454 -23.52557 -23.43703 -22.76223 -22.18771 -20.37859 -18.30358 -17.80030 -17.41360 -16.69103 -16.39399 -16.34923 -15.95202 -15.82293 -15.46920 -15.18143 -14.91224 -14.65474 -14.29179 -13.96764 -13.61488 -13.36003 -13.23029 -13.09510 -12.72585 -12.69354 -12.54074 -12.35169 -12.04709 -11.73553 -11.65645 -11.31473 -11.16517 -10.97905 -10.59171 -10.51067 -9.93924 -9.80491 -9.67113 -9.40578 -9.28042 -9.18948 -8.92614 -8.72773 -8.61522 -8.28030 -7.90858 -6.48633 -4.46052 0.88540 1.14361 1.37476 2.01186 2.47573 2.96228 3.02087 3.04529 3.09374 3.53595 3.80678 4.00534 4.09953 4.10744 4.47133 4.72893 4.81055 4.83018 4.89250 5.10442 5.15822 5.18115 5.28428 5.35253 5.42500 5.53709 5.62747 5.69179 5.70643 5.72993 5.83512 6.00257 6.04008 6.08174 6.19980 6.24493 6.31268 6.71397 6.77042 7.04392 7.06787 7.19541 7.85680 8.09402 8.19129 8.32065 8.58247 8.77475 9.05081 10.61891 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.011360 B = 0.004335 C = 0.003566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2464.284543 B = 6457.664125 C = 7849.880426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.379 6.379 3 C 0.146 3.854 4 C -0.065 4.065 5 N -0.480 5.480 6 C 0.095 3.905 7 C -0.304 4.304 8 C 0.600 3.400 9 O -0.533 6.533 10 N -0.587 5.587 11 C 0.200 3.800 12 C -0.536 4.536 13 H 0.090 0.910 14 C 0.091 3.909 15 N -0.863 5.863 16 Si 0.844 3.156 17 H -0.262 1.262 18 H -0.273 1.273 19 H -0.258 1.258 20 C 0.170 3.830 21 C 0.117 3.883 22 C -0.160 4.160 23 C -0.080 4.080 24 C -0.180 4.180 25 C 0.095 3.905 26 N -0.457 5.457 27 S 0.358 5.642 28 H 0.040 0.960 29 H 0.087 0.913 30 H 0.042 0.958 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.175 0.825 34 H 0.050 0.950 35 H 0.026 0.974 36 H 0.273 0.727 37 H 0.100 0.900 38 H 0.099 0.901 39 H 0.137 0.863 40 H 0.131 0.869 41 H 0.130 0.870 42 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.371 10.963 -0.362 11.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.297 6.297 3 C 0.067 3.933 4 C -0.334 4.334 5 N -0.196 5.196 6 C -0.067 4.067 7 C -0.430 4.430 8 C 0.388 3.612 9 O -0.412 6.412 10 N -0.318 5.318 11 C 0.076 3.924 12 C -0.579 4.579 13 H 0.108 0.892 14 C -0.117 4.117 15 N -0.498 5.498 16 Si 0.668 3.332 17 H -0.187 1.187 18 H -0.198 1.198 19 H -0.182 1.182 20 C 0.047 3.953 21 C -0.023 4.023 22 C -0.180 4.180 23 C -0.107 4.107 24 C -0.200 4.200 25 C -0.063 4.063 26 N -0.166 5.166 27 S 0.624 5.376 28 H 0.059 0.941 29 H 0.106 0.894 30 H 0.060 0.940 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.192 0.808 34 H 0.068 0.932 35 H 0.043 0.957 36 H 0.083 0.917 37 H 0.118 0.882 38 H 0.117 0.883 39 H 0.154 0.846 40 H 0.149 0.851 41 H 0.148 0.852 42 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 1.139 10.100 -0.846 10.199 hybrid contribution -0.177 1.449 0.611 1.583 sum 0.962 11.549 -0.235 11.592 Atomic orbital electron populations 1.22755 0.80932 1.02965 0.99819 1.88031 1.19539 1.26771 1.95360 1.20672 0.85917 0.85561 1.01179 1.27890 1.01033 1.06274 0.98206 1.66124 1.04524 1.16102 1.32891 1.21809 0.90840 0.99000 0.95071 1.25860 0.98888 1.19925 0.98350 1.16734 0.85982 0.76445 0.82030 1.90770 1.45543 1.49716 1.55183 1.47611 1.06642 1.71131 1.06398 1.20094 0.85081 0.98101 0.89089 1.21432 1.16318 0.92906 1.27197 0.89186 1.24817 0.95718 0.95910 0.95230 1.69856 1.22958 1.24085 1.32889 0.87279 0.80863 0.84405 0.80633 1.18687 1.19828 1.18184 1.20191 0.82353 0.90944 1.01861 1.21888 0.94093 0.97615 0.88664 1.22102 1.00647 0.95306 0.99979 1.21546 0.95474 0.95442 0.98196 1.22119 1.02148 1.01294 0.94430 1.22806 0.95607 0.89822 0.98034 1.67654 1.07432 1.13703 1.27768 1.85891 0.92860 1.56293 1.02543 0.94092 0.89417 0.93969 0.91681 0.91232 0.80758 0.93188 0.95693 0.91685 0.88211 0.88263 0.84552 0.85061 0.85192 0.83077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 101.05 1.11 1.50 16 2 O -0.38 -6.56 10.69 -35.23 -0.38 -6.93 16 3 C 0.15 2.36 6.51 36.00 0.23 2.60 16 4 C -0.06 -1.27 7.02 -13.29 -0.09 -1.36 16 5 N -0.48 -9.79 10.51 -11.50 -0.12 -9.92 16 6 C 0.09 1.94 11.10 -18.85 -0.21 1.73 16 7 C -0.30 -6.52 6.24 -37.09 -0.23 -6.75 16 8 C 0.60 13.24 7.57 -12.85 -0.10 13.14 16 9 O -0.53 -12.53 16.44 5.20 0.09 -12.45 16 10 N -0.59 -11.95 2.46 -177.97 -0.44 -12.39 16 11 C 0.20 4.15 3.82 -5.20 -0.02 4.13 16 12 C -0.54 -12.86 7.56 -34.44 -0.26 -13.12 16 13 H 0.09 2.48 8.06 -52.49 -0.42 2.05 16 14 C 0.09 2.22 5.11 -17.82 -0.09 2.13 16 15 N -0.86 -22.88 13.96 55.43 0.77 -22.11 16 16 Si 0.84 17.51 26.82 -169.99 -4.56 12.95 16 17 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 18 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 19 H -0.26 -4.98 6.54 56.52 0.37 -4.61 16 20 C 0.17 2.99 5.70 -5.19 -0.03 2.96 16 21 C 0.12 1.90 6.36 -82.59 -0.53 1.38 16 22 C -0.16 -2.18 9.72 -39.44 -0.38 -2.56 16 23 C -0.08 -0.92 10.18 -39.28 -0.40 -1.32 16 24 C -0.18 -2.00 10.11 -39.44 -0.40 -2.40 16 25 C 0.09 1.28 11.18 -17.55 -0.20 1.08 16 26 N -0.46 -7.78 10.27 -9.47 -0.10 -7.88 16 27 S 0.36 7.40 15.50 -107.50 -1.67 5.74 16 28 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.04 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 33 H 0.18 3.26 8.06 -52.49 -0.42 2.84 16 34 H 0.05 0.97 7.07 -51.93 -0.37 0.61 16 35 H 0.03 0.54 3.95 -22.89 -0.09 0.45 16 36 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 37 H 0.10 1.55 7.97 -51.93 -0.41 1.13 16 38 H 0.10 1.83 7.39 -51.93 -0.38 1.45 16 39 H 0.14 1.65 8.06 -52.48 -0.42 1.23 16 40 H 0.13 1.12 8.06 -52.49 -0.42 0.69 16 41 H 0.13 1.04 8.06 -52.48 -0.42 0.61 16 42 H 0.15 1.63 8.06 -52.49 -0.42 1.21 16 LS Contribution 370.34 15.07 5.58 5.58 Total: -1.00 -31.20 370.34 -7.48 -38.68 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -5.07 Total: 5.59 kcal Atomic # 6 Polarization: 4.72 SS G_CDS: -1.59 Total: 3.13 kcal Atomic # 7 Polarization: -52.41 SS G_CDS: 0.12 Total: -52.29 kcal Atomic # 8 Polarization: -19.09 SS G_CDS: -0.29 Total: -19.38 kcal Atomic # 14 Polarization: 17.51 SS G_CDS: -4.56 Total: 12.95 kcal Atomic # 16 Polarization: 7.40 SS G_CDS: -1.67 Total: 5.74 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.20 -7.48 -38.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285499936.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.106 kcal (2) G-P(sol) polarization free energy of solvation -31.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds