Wall clock time and date at job start Wed Apr 1 2020 04:26:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42897 * 114.00306 * 2 1 4 4 C 1.50698 * 109.47387 * 179.97438 * 3 2 1 5 5 N 1.29432 * 124.80399 * 90.02240 * 4 3 2 6 6 C 1.30938 * 117.36410 * 179.97438 * 5 4 3 7 7 C 1.35660 * 114.19060 * 0.02562 * 6 5 4 8 8 C 1.46686 * 126.13156 * 179.97438 * 7 6 5 9 9 O 1.21686 * 119.99745 * 352.36735 * 8 7 6 10 10 N 1.34772 * 120.00075 * 172.64175 * 8 7 6 11 11 C 1.46498 * 120.00378 * 1.93925 * 10 8 7 12 12 C 1.50697 * 109.47457 * 82.40928 * 11 10 8 13 13 H 1.08001 * 119.99586 * 0.02562 * 12 11 10 14 14 C 1.37870 * 120.00102 * 180.02562 * 12 11 10 15 15 N 1.31517 * 119.99853 * 180.02562 * 14 12 11 16 16 Si 1.86804 * 120.00146 * 359.97438 * 14 12 11 17 17 H 1.48497 * 109.47115 * 90.00209 * 16 14 12 18 18 H 1.48501 * 109.46965 * 209.99933 * 16 14 12 19 19 H 1.48498 * 109.46843 * 330.00286 * 16 14 12 20 20 C 1.46511 * 119.99851 * 181.93806 * 10 8 7 21 21 C 1.50698 * 109.47124 * 89.99943 * 20 10 8 22 22 C 1.38229 * 119.61887 * 94.72760 * 21 20 10 23 23 C 1.38628 * 119.16222 * 179.75158 * 22 21 20 24 24 C 1.38671 * 118.41824 * 0.51136 * 23 22 21 25 25 C 1.38181 * 119.16643 * 359.73280 * 24 23 22 26 26 N 1.31855 * 119.61762 * 275.00134 * 21 20 10 27 27 S 1.70953 * 124.80478 * 270.29566 * 4 3 2 28 28 H 1.08996 * 109.47281 * 59.99658 * 1 2 3 29 29 H 1.08997 * 109.47254 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.47125 * 300.00392 * 1 2 3 31 31 H 1.09006 * 109.47365 * 59.99387 * 3 2 1 32 32 H 1.08999 * 109.46645 * 300.00389 * 3 2 1 33 33 H 1.08002 * 122.90365 * 180.02562 * 6 5 4 34 34 H 1.08996 * 109.47286 * 202.41333 * 11 10 8 35 35 H 1.09007 * 109.46807 * 322.41026 * 11 10 8 36 36 H 0.97005 * 119.99674 * 180.02562 * 15 14 12 37 37 H 1.09000 * 109.46930 * 210.00189 * 20 10 8 38 38 H 1.09002 * 109.47017 * 329.99808 * 20 10 8 39 39 H 1.08004 * 120.41471 * 359.97438 * 22 21 20 40 40 H 1.07996 * 120.78724 * 180.25786 * 23 22 21 41 41 H 1.08005 * 120.41592 * 179.70525 * 24 23 22 42 42 H 1.07994 * 119.62256 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1864 0.0006 5 7 4.2495 1.1283 -1.0618 6 6 5.5438 1.0262 -0.8917 7 6 5.9329 0.9950 0.4075 8 6 7.3121 0.8856 0.8948 9 8 8.2191 0.6736 0.1117 10 7 7.5741 1.0144 2.2105 11 6 6.4771 1.2213 3.1591 12 6 5.8540 -0.1068 3.5041 13 1 6.2372 -1.0143 3.0613 14 6 4.7948 -0.1634 4.3848 15 7 4.2514 -1.3225 4.6862 16 14 4.1325 1.4062 5.1512 17 1 3.0620 1.9654 4.2873 18 1 3.5771 1.1047 6.4951 19 1 5.2319 2.3960 5.2805 20 6 8.9562 0.9475 2.6922 21 6 9.5547 2.3305 2.6949 22 6 9.5279 3.0843 3.8533 23 6 10.0858 4.3533 3.8465 24 6 10.6428 4.8230 2.6667 25 6 10.6284 4.0143 1.5464 26 7 10.0931 2.8097 1.5908 27 16 4.4841 1.1024 1.4047 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.6886 1.8464 0.8900 32 1 1.6886 1.8463 -0.8900 33 1 6.2411 0.9716 -1.7146 34 1 6.8634 1.6877 4.0653 35 1 5.7250 1.8695 2.7091 36 1 3.5060 -1.3622 5.3057 37 1 8.9689 0.5441 3.7047 38 1 9.5387 0.3007 2.0361 39 1 9.0811 2.6881 4.7532 40 1 10.0830 4.9632 4.7378 41 1 11.0820 5.8088 2.6238 42 1 11.0606 4.3725 0.6238 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000285499936.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:38 Heat of formation + Delta-G solvation = -1.182008 kcal Electronic energy + Delta-G solvation = -28091.324896 eV Core-core repulsion = 24163.513542 eV Total energy + Delta-G solvation = -3927.811354 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.46479 -40.82746 -40.08605 -38.69834 -37.04776 -34.83382 -33.50931 -33.11017 -32.18151 -30.20369 -29.64333 -27.70746 -26.90394 -25.03174 -24.68631 -24.22564 -23.42456 -21.86416 -19.87315 -19.38880 -19.23916 -17.82973 -17.77202 -17.58672 -17.37762 -17.01267 -16.65798 -16.46841 -16.28148 -16.19366 -15.79610 -15.49257 -15.03032 -14.78092 -14.62014 -14.39291 -14.20226 -14.04109 -13.85653 -13.62409 -13.32289 -13.18763 -12.81030 -12.66409 -12.53493 -12.37020 -12.21345 -12.13981 -11.78260 -11.14538 -10.98431 -10.78754 -10.76414 -10.38182 -10.32314 -10.29440 -9.99923 -9.89005 -9.51719 -8.35021 -6.38964 -0.72116 0.12173 0.38513 0.42071 0.86135 1.35981 1.39410 1.42539 1.47389 2.06209 2.19870 2.28648 2.80707 2.97974 2.98797 3.35602 3.37882 3.60586 3.85316 3.91714 4.04607 4.19701 4.26535 4.27147 4.31199 4.35712 4.40425 4.48702 4.50538 4.56608 4.58016 4.66670 4.78104 4.83859 4.87365 5.12283 5.23263 5.25027 5.27993 5.47851 5.82232 6.07081 6.10139 6.35788 6.60644 6.69853 7.06961 7.14977 7.19515 8.79679 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.011360 B = 0.004335 C = 0.003566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2464.284543 B = 6457.664125 C = 7849.880426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.416 6.416 3 C 0.141 3.859 4 C -0.051 4.051 5 N -0.489 5.489 6 C 0.097 3.903 7 C -0.325 4.325 8 C 0.593 3.407 9 O -0.560 6.560 10 N -0.585 5.585 11 C 0.207 3.793 12 C -0.536 4.536 13 H 0.038 0.962 14 C 0.051 3.949 15 N -0.916 5.916 16 Si 0.890 3.110 17 H -0.244 1.244 18 H -0.274 1.274 19 H -0.229 1.229 20 C 0.168 3.832 21 C 0.090 3.910 22 C -0.164 4.164 23 C -0.076 4.076 24 C -0.164 4.164 25 C 0.077 3.923 26 N -0.501 5.501 27 S 0.340 5.660 28 H 0.062 0.938 29 H 0.095 0.905 30 H 0.057 0.943 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.186 0.814 34 H 0.072 0.928 35 H 0.035 0.965 36 H 0.274 0.726 37 H 0.114 0.886 38 H 0.078 0.922 39 H 0.150 0.850 40 H 0.170 0.830 41 H 0.170 0.830 42 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.587 14.603 0.556 14.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.335 6.335 3 C 0.062 3.938 4 C -0.321 4.321 5 N -0.206 5.206 6 C -0.065 4.065 7 C -0.450 4.450 8 C 0.381 3.619 9 O -0.441 6.441 10 N -0.315 5.315 11 C 0.083 3.917 12 C -0.578 4.578 13 H 0.057 0.943 14 C -0.153 4.153 15 N -0.553 5.553 16 Si 0.710 3.290 17 H -0.168 1.168 18 H -0.199 1.199 19 H -0.152 1.152 20 C 0.045 3.955 21 C -0.048 4.048 22 C -0.184 4.184 23 C -0.102 4.102 24 C -0.183 4.183 25 C -0.080 4.080 26 N -0.211 5.211 27 S 0.605 5.395 28 H 0.081 0.919 29 H 0.114 0.886 30 H 0.076 0.924 31 H 0.108 0.892 32 H 0.111 0.889 33 H 0.203 0.797 34 H 0.090 0.910 35 H 0.051 0.949 36 H 0.084 0.916 37 H 0.132 0.868 38 H 0.096 0.904 39 H 0.168 0.832 40 H 0.187 0.813 41 H 0.187 0.813 42 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 0.387 13.746 0.095 13.752 hybrid contribution 0.074 0.300 0.191 0.363 sum 0.461 14.046 0.286 14.057 Atomic orbital electron populations 1.23020 0.78259 1.04183 1.01637 1.87964 1.22494 1.27332 1.95733 1.20912 0.83438 0.85858 1.03545 1.28470 1.02826 1.03770 0.97013 1.66222 1.04417 1.16870 1.33117 1.22069 0.91283 0.97944 0.95180 1.25905 0.98970 1.21212 0.98955 1.16937 0.86083 0.76342 0.82547 1.90736 1.46288 1.51209 1.55846 1.47684 1.07777 1.70222 1.05816 1.20001 0.85325 0.96467 0.89881 1.21297 1.16732 0.92514 1.27214 0.94322 1.25493 0.95541 0.98923 0.95336 1.69998 1.24089 1.26826 1.34376 0.86520 0.81604 0.81094 0.79778 1.16835 1.19934 1.15161 1.20286 0.80815 0.92604 1.01794 1.21577 0.96092 0.97139 0.89976 1.22271 1.00761 0.96120 0.99268 1.22009 0.93880 0.94640 0.99642 1.22535 1.00316 1.02246 0.93223 1.23242 0.95646 0.89201 0.99958 1.67521 1.08951 1.15825 1.28832 1.85713 0.93025 1.57278 1.03526 0.91925 0.88647 0.92422 0.89233 0.88875 0.79696 0.91023 0.94878 0.91643 0.86804 0.90409 0.83244 0.81300 0.81287 0.81358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.53 11.01 113.37 1.25 1.78 16 2 O -0.42 -13.70 10.69 -148.98 -1.59 -15.29 16 3 C 0.14 4.24 6.51 71.24 0.46 4.70 16 4 C -0.05 -1.93 7.02 88.46 0.62 -1.31 16 5 N -0.49 -19.68 10.51 -190.30 -2.00 -21.68 16 6 C 0.10 4.01 11.10 84.23 0.93 4.94 16 7 C -0.32 -14.21 6.24 23.88 0.15 -14.06 16 8 C 0.59 27.15 7.57 86.45 0.65 27.80 16 9 O -0.56 -27.60 16.44 -4.30 -0.07 -27.67 16 10 N -0.59 -24.50 2.46 -835.21 -2.06 -26.56 16 11 C 0.21 8.56 3.82 85.63 0.33 8.89 16 12 C -0.54 -26.48 7.56 25.60 0.19 -26.29 16 13 H 0.04 2.27 8.06 -2.91 -0.02 2.24 16 14 C 0.05 2.49 5.11 84.65 0.43 2.92 16 15 N -0.92 -50.06 13.96 21.45 0.30 -49.76 16 16 Si 0.89 34.51 26.82 68.60 1.84 36.35 16 17 H -0.24 -8.77 7.11 99.48 0.71 -8.06 16 18 H -0.27 -10.67 7.11 99.48 0.71 -9.97 16 19 H -0.23 -7.79 6.54 99.48 0.65 -7.13 16 20 C 0.17 6.13 5.70 85.63 0.49 6.62 16 21 C 0.09 2.94 6.36 42.55 0.27 3.21 16 22 C -0.16 -4.11 9.72 22.36 0.22 -3.89 16 23 C -0.08 -1.44 10.18 22.47 0.23 -1.21 16 24 C -0.16 -3.05 10.11 22.36 0.23 -2.82 16 25 C 0.08 1.95 11.18 84.67 0.95 2.90 16 26 N -0.50 -17.16 10.27 -183.89 -1.89 -19.05 16 27 S 0.34 13.96 15.50 -56.49 -0.88 13.08 16 28 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 31 H 0.09 2.23 8.14 -2.38 -0.02 2.21 16 32 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 33 H 0.19 7.05 8.06 -2.91 -0.02 7.03 16 34 H 0.07 2.66 7.07 -2.39 -0.02 2.65 16 35 H 0.03 1.39 3.95 -20.85 -0.08 1.31 16 36 H 0.27 13.95 8.31 -92.70 -0.77 13.18 16 37 H 0.11 3.66 7.97 -2.39 -0.02 3.64 16 38 H 0.08 3.10 7.39 -2.39 -0.02 3.09 16 39 H 0.15 3.22 8.06 -2.91 -0.02 3.20 16 40 H 0.17 1.93 8.06 -2.91 -0.02 1.90 16 41 H 0.17 1.80 8.06 -2.91 -0.02 1.78 16 42 H 0.17 3.41 8.06 -2.91 -0.02 3.38 16 Total: -1.00 -71.64 370.34 1.97 -69.66 By element: Atomic # 1 Polarization: 25.80 SS G_CDS: 0.92 Total: 26.72 kcal Atomic # 6 Polarization: 6.79 SS G_CDS: 7.40 Total: 14.20 kcal Atomic # 7 Polarization: -111.40 SS G_CDS: -5.65 Total: -117.05 kcal Atomic # 8 Polarization: -41.30 SS G_CDS: -1.66 Total: -42.96 kcal Atomic # 14 Polarization: 34.51 SS G_CDS: 1.84 Total: 36.35 kcal Atomic # 16 Polarization: 13.96 SS G_CDS: -0.88 Total: 13.08 kcal Total: -71.64 1.97 -69.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285499936.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.480 kcal (2) G-P(sol) polarization free energy of solvation -71.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds