Wall clock time and date at job start Wed Apr 1 2020 04:09:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.37687 * 126.50492 * 2 1 4 4 C 1.34382 * 106.95966 * 179.97438 * 3 2 1 5 5 N 1.34357 * 108.34526 * 359.74296 * 4 3 2 6 6 C 1.31273 * 109.30504 * 0.42914 * 5 4 3 7 7 S 1.76202 * 125.80011 * 179.83342 * 6 5 4 8 8 C 1.81001 * 100.00066 * 359.69389 * 7 6 5 9 9 C 1.50703 * 109.46661 * 180.02562 * 8 7 6 10 10 C 1.35165 * 125.61263 * 90.02084 * 9 8 7 11 11 C 1.40319 * 107.13007 * 179.74074 * 10 9 8 12 12 C 1.36669 * 106.70271 * 0.34974 * 11 10 9 13 13 C 1.46512 * 125.99704 * 179.90899 * 12 11 10 14 14 O 1.21751 * 119.99916 * 354.01313 * 13 12 11 15 15 N 1.34779 * 120.00420 * 174.01530 * 13 12 11 16 16 C 1.36845 * 120.00107 * 175.16441 * 15 13 12 17 17 H 1.08005 * 119.99867 * 224.12333 * 16 15 13 18 18 C 1.39023 * 120.00189 * 44.12681 * 16 15 13 19 19 N 1.31380 * 119.99996 * 18.72943 * 18 16 15 20 20 Si 1.86803 * 120.00123 * 198.72770 * 18 16 15 21 21 H 1.48500 * 109.47198 * 179.97438 * 20 18 16 22 22 H 1.48499 * 109.47271 * 300.00236 * 20 18 16 23 23 H 1.48502 * 109.46875 * 60.00119 * 20 18 16 24 24 C 1.46505 * 119.99790 * 355.16580 * 15 13 12 25 25 C 1.53001 * 117.49967 * 183.50241 * 24 15 13 26 26 C 1.53002 * 117.49881 * 114.84053 * 24 15 13 27 27 O 1.33959 * 125.60816 * 269.97145 * 9 8 7 28 28 H 1.08998 * 109.46757 * 270.03315 * 1 2 3 29 29 H 1.09004 * 109.46819 * 30.02487 * 1 2 3 30 30 H 1.08990 * 109.46696 * 150.02389 * 1 2 3 31 31 H 1.08000 * 126.51884 * 359.97438 * 3 2 1 32 32 H 1.08000 * 125.82748 * 180.02562 * 4 3 2 33 33 H 1.08998 * 109.47222 * 60.00332 * 8 7 6 34 34 H 1.08999 * 109.46972 * 299.99799 * 8 7 6 35 35 H 1.08002 * 126.43050 * 359.97438 * 10 9 8 36 36 H 1.07996 * 126.65147 * 180.25822 * 11 10 9 37 37 H 0.97003 * 120.00140 * 174.97007 * 19 18 16 38 38 H 1.08997 * 115.54559 * 329.17207 * 24 15 13 39 39 H 1.08996 * 117.49400 * 0.02562 * 25 24 15 40 40 H 1.08994 * 117.49503 * 145.02188 * 25 24 15 41 41 H 1.08992 * 117.49573 * 214.97881 * 26 24 15 42 42 H 1.08997 * 117.49824 * 359.97438 * 26 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2841 1.1067 0.0000 4 6 3.5505 0.6572 0.0006 5 7 3.5224 -0.6861 0.0066 6 6 2.2746 -1.0941 0.0006 7 16 1.7391 -2.7728 0.0009 8 6 3.3418 -3.6140 0.0017 9 6 3.1261 -5.1055 0.0013 10 6 3.0145 -5.8844 -1.0977 11 6 2.8296 -7.2024 -0.6531 12 6 2.8299 -7.1598 0.7129 13 6 2.6651 -8.3063 1.6102 14 8 2.4018 -9.4038 1.1535 15 7 2.8050 -8.1461 2.9411 16 6 2.5544 -9.1927 3.7863 17 1 1.9838 -9.0329 4.6893 18 6 3.0341 -10.4617 3.4827 19 7 4.0118 -10.6046 2.6168 20 14 2.2888 -11.9638 4.3061 21 1 2.9714 -13.1876 3.8145 22 1 2.4601 -11.8579 5.7773 23 1 0.8419 -12.0399 3.9804 24 6 3.2254 -6.8514 3.4828 25 6 3.4454 -6.7558 4.9939 26 6 2.2235 -6.0914 4.3544 27 8 3.0144 -5.8776 1.0903 28 1 -0.3633 0.0006 1.0277 29 1 -0.3633 0.8898 -0.5142 30 1 -0.3632 -0.8901 -0.5134 31 1 1.9688 2.1397 -0.0004 32 1 4.4392 1.2709 0.0011 33 1 3.9019 -3.3277 0.8918 34 1 3.9026 -3.3281 -0.8882 35 1 3.0627 -5.5547 -2.1250 36 1 2.7089 -8.0801 -1.2707 37 1 4.3958 -11.4813 2.4591 38 1 3.8812 -6.2637 2.8405 39 1 3.2777 -7.6562 5.5848 40 1 4.2456 -6.1047 5.3457 41 1 2.2206 -5.0036 4.2857 42 1 1.2515 -6.5544 4.5243 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299293112.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:09:07 Heat of formation + Delta-G solvation = 97.098079 kcal Electronic energy + Delta-G solvation = -27409.583248 eV Core-core repulsion = 23486.033639 eV Total energy + Delta-G solvation = -3923.549609 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.15763 -41.99261 -38.40257 -36.10845 -34.31191 -33.05844 -32.84605 -31.62475 -30.95740 -29.88081 -27.31175 -27.18920 -24.91715 -22.28431 -21.86863 -21.64893 -21.49930 -21.29543 -20.37183 -19.62149 -18.11880 -17.48549 -16.39710 -16.12482 -16.07454 -15.73833 -15.27905 -14.76911 -14.57736 -14.31343 -14.15386 -13.89386 -13.84618 -13.58926 -13.34379 -13.17183 -13.03302 -12.87009 -12.49960 -12.41839 -11.97877 -11.86479 -11.14839 -10.98286 -10.93631 -10.90291 -10.74542 -10.34180 -10.27717 -9.98752 -9.95423 -9.70934 -9.58741 -9.47522 -8.88646 -8.34473 -7.95252 -7.60818 -7.15527 -6.21450 -3.97033 0.80922 1.64400 1.69637 2.14856 2.60481 2.81557 2.95554 3.16952 3.27945 3.34043 3.37015 4.15906 4.34609 4.38286 4.51481 4.64744 4.74092 4.77603 4.85643 4.99878 5.04339 5.05975 5.22536 5.34064 5.34577 5.48343 5.56533 5.68056 5.79585 5.84661 5.99299 6.18262 6.27888 6.28836 6.32042 6.43084 6.53255 6.61217 6.81834 6.87112 6.94074 7.40097 7.53003 7.63235 8.15861 8.88050 8.99353 9.47436 10.09227 10.85416 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.020421 B = 0.002604 C = 0.002469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.822856 B =10748.464990 C =11339.871549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.450 5.450 3 C -0.052 4.052 4 C -0.017 4.017 5 N -0.491 5.491 6 C 0.189 3.811 7 S -0.009 6.009 8 C -0.004 4.004 9 C -0.038 4.038 10 C -0.174 4.174 11 C -0.174 4.174 12 C 0.003 3.997 13 C 0.536 3.464 14 O -0.509 6.509 15 N -0.403 5.403 16 C -0.347 4.347 17 H 0.086 0.914 18 C 0.070 3.930 19 N -0.817 5.817 20 Si 0.918 3.082 21 H -0.284 1.284 22 H -0.276 1.276 23 H -0.272 1.272 24 C 0.072 3.928 25 C -0.173 4.173 26 C -0.199 4.199 27 O -0.150 6.150 28 H 0.081 0.919 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.177 0.823 32 H 0.173 0.827 33 H 0.111 0.889 34 H 0.120 0.880 35 H 0.149 0.851 36 H 0.154 0.846 37 H 0.269 0.731 38 H 0.113 0.887 39 H 0.108 0.892 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.191 21.837 -5.146 22.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.136 5.136 3 C -0.187 4.187 4 C -0.167 4.167 5 N -0.213 5.213 6 C -0.181 4.181 7 S 0.224 5.776 8 C -0.152 4.152 9 C -0.092 4.092 10 C -0.196 4.196 11 C -0.195 4.195 12 C -0.053 4.053 13 C 0.323 3.677 14 O -0.388 6.388 15 N -0.121 5.121 16 C -0.474 4.474 17 H 0.103 0.897 18 C -0.142 4.142 19 N -0.449 5.449 20 Si 0.745 3.255 21 H -0.210 1.210 22 H -0.202 1.202 23 H -0.197 1.197 24 C -0.034 4.034 25 C -0.210 4.210 26 C -0.238 4.238 27 O -0.046 6.046 28 H 0.099 0.901 29 H 0.107 0.893 30 H 0.109 0.891 31 H 0.194 0.806 32 H 0.190 0.810 33 H 0.129 0.871 34 H 0.139 0.861 35 H 0.167 0.833 36 H 0.172 0.828 37 H 0.079 0.921 38 H 0.130 0.870 39 H 0.126 0.874 40 H 0.103 0.897 41 H 0.104 0.896 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -4.806 20.292 -5.190 21.490 hybrid contribution 0.373 0.627 0.158 0.747 sum -4.434 20.920 -5.032 21.968 Atomic orbital electron populations 1.22114 0.76031 1.04922 1.04103 1.45466 1.07441 1.05336 1.55354 1.22823 0.91056 0.92289 1.12519 1.22303 0.96584 0.90941 1.06911 1.70777 1.16979 1.12238 1.21323 1.25312 0.88598 0.94882 1.09290 1.85905 1.11358 0.87010 1.93336 1.21630 0.96357 0.88423 1.08785 1.21376 1.10531 0.91498 0.85758 1.21467 1.06307 0.92957 0.98872 1.21762 1.06420 0.97870 0.93470 1.23467 1.04302 0.82009 0.95491 1.16346 0.84642 0.84877 0.81857 1.90736 1.50900 1.22829 1.74299 1.42681 1.57243 1.08091 1.04093 1.18943 1.35615 0.86263 1.06569 0.89673 1.25336 0.94061 0.99353 0.95458 1.69835 1.19904 1.24671 1.30493 0.86178 0.79911 0.80815 0.78627 1.20976 1.20151 1.19723 1.21886 1.00196 0.88909 0.92364 1.23120 0.99021 1.02813 0.96064 1.23260 0.95407 0.98362 1.06768 1.84285 1.69235 1.17777 1.33295 0.90052 0.89257 0.89115 0.80556 0.81004 0.87057 0.86150 0.83314 0.82789 0.92100 0.86967 0.87413 0.89653 0.89616 0.89092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.42 11.01 59.85 0.66 1.08 16 2 N -0.45 -4.40 3.20 -124.33 -0.40 -4.80 16 3 C -0.05 -0.45 11.60 -16.28 -0.19 -0.64 16 4 C -0.02 -0.18 11.84 -17.81 -0.21 -0.39 16 5 N -0.49 -6.51 10.60 -13.45 -0.14 -6.65 16 6 C 0.19 2.34 7.96 -88.75 -0.71 1.63 16 7 S -0.01 -0.11 21.61 -107.50 -2.32 -2.43 16 8 C 0.00 -0.06 5.73 36.01 0.21 0.15 16 9 C -0.04 -0.62 6.57 -35.40 -0.23 -0.85 16 10 C -0.17 -2.75 10.77 -39.89 -0.43 -3.18 16 11 C -0.17 -3.39 10.63 -39.37 -0.42 -3.81 16 12 C 0.00 0.06 6.78 -36.82 -0.25 -0.19 16 13 C 0.54 14.27 7.03 -12.93 -0.09 14.18 16 14 O -0.51 -15.23 14.36 5.14 0.07 -15.16 16 15 N -0.40 -10.40 2.83 -109.25 -0.31 -10.70 16 16 C -0.35 -9.41 7.94 -15.02 -0.12 -9.53 16 17 H 0.09 2.19 7.26 -52.48 -0.38 1.81 16 18 C 0.07 1.95 4.37 -17.45 -0.08 1.88 16 19 N -0.82 -24.00 11.59 55.50 0.64 -23.36 16 20 Si 0.92 21.46 29.60 -169.99 -5.03 16.43 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 23 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 24 C 0.07 1.54 5.19 -67.93 -0.35 1.18 16 25 C -0.17 -3.22 9.80 -26.69 -0.26 -3.49 16 26 C -0.20 -3.61 10.36 -26.69 -0.28 -3.89 16 27 O -0.15 -2.90 7.42 4.89 0.04 -2.87 16 28 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.09 0.55 7.73 -51.93 -0.40 0.15 16 31 H 0.18 0.85 8.06 -52.49 -0.42 0.43 16 32 H 0.17 1.33 8.06 -52.49 -0.42 0.90 16 33 H 0.11 1.47 8.14 -51.92 -0.42 1.05 16 34 H 0.12 1.41 8.14 -51.92 -0.42 0.98 16 35 H 0.15 1.86 8.06 -52.49 -0.42 1.44 16 36 H 0.15 2.93 8.06 -52.49 -0.42 2.50 16 37 H 0.27 7.51 8.32 -40.82 -0.34 7.17 16 38 H 0.11 2.34 5.92 -51.93 -0.31 2.03 16 39 H 0.11 2.16 6.73 -51.93 -0.35 1.81 16 40 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 41 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 42 H 0.09 1.72 8.14 -51.93 -0.42 1.30 16 LS Contribution 375.30 15.07 5.66 5.66 Total: -1.00 -34.58 375.30 -9.77 -44.35 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -5.23 Total: 5.39 kcal Atomic # 6 Polarization: -3.12 SS G_CDS: -2.75 Total: -5.87 kcal Atomic # 7 Polarization: -45.30 SS G_CDS: -0.21 Total: -45.51 kcal Atomic # 8 Polarization: -18.14 SS G_CDS: 0.11 Total: -18.02 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.03 Total: 16.43 kcal Atomic # 16 Polarization: -0.11 SS G_CDS: -2.32 Total: -2.43 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.58 -9.77 -44.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299293112.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.447 kcal (2) G-P(sol) polarization free energy of solvation -34.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.348 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds