Wall clock time and date at job start Wed Apr 1 2020 04:09:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.37687 * 126.50492 * 2 1 4 4 C 1.34382 * 106.95966 * 179.97438 * 3 2 1 5 5 N 1.34357 * 108.34526 * 359.74296 * 4 3 2 6 6 C 1.31273 * 109.30504 * 0.42914 * 5 4 3 7 7 S 1.76202 * 125.80011 * 179.83342 * 6 5 4 8 8 C 1.81001 * 100.00066 * 359.69389 * 7 6 5 9 9 C 1.50703 * 109.46661 * 180.02562 * 8 7 6 10 10 C 1.35165 * 125.61263 * 90.02084 * 9 8 7 11 11 C 1.40319 * 107.13007 * 179.74074 * 10 9 8 12 12 C 1.36669 * 106.70271 * 0.34974 * 11 10 9 13 13 C 1.46512 * 125.99704 * 179.90899 * 12 11 10 14 14 O 1.21751 * 119.99916 * 354.01313 * 13 12 11 15 15 N 1.34779 * 120.00420 * 174.01530 * 13 12 11 16 16 C 1.36845 * 120.00107 * 175.16441 * 15 13 12 17 17 H 1.08005 * 119.99867 * 224.12333 * 16 15 13 18 18 C 1.39023 * 120.00189 * 44.12681 * 16 15 13 19 19 N 1.31380 * 119.99996 * 18.72943 * 18 16 15 20 20 Si 1.86803 * 120.00123 * 198.72770 * 18 16 15 21 21 H 1.48500 * 109.47198 * 179.97438 * 20 18 16 22 22 H 1.48499 * 109.47271 * 300.00236 * 20 18 16 23 23 H 1.48502 * 109.46875 * 60.00119 * 20 18 16 24 24 C 1.46505 * 119.99790 * 355.16580 * 15 13 12 25 25 C 1.53001 * 117.49967 * 183.50241 * 24 15 13 26 26 C 1.53002 * 117.49881 * 114.84053 * 24 15 13 27 27 O 1.33959 * 125.60816 * 269.97145 * 9 8 7 28 28 H 1.08998 * 109.46757 * 270.03315 * 1 2 3 29 29 H 1.09004 * 109.46819 * 30.02487 * 1 2 3 30 30 H 1.08990 * 109.46696 * 150.02389 * 1 2 3 31 31 H 1.08000 * 126.51884 * 359.97438 * 3 2 1 32 32 H 1.08000 * 125.82748 * 180.02562 * 4 3 2 33 33 H 1.08998 * 109.47222 * 60.00332 * 8 7 6 34 34 H 1.08999 * 109.46972 * 299.99799 * 8 7 6 35 35 H 1.08002 * 126.43050 * 359.97438 * 10 9 8 36 36 H 1.07996 * 126.65147 * 180.25822 * 11 10 9 37 37 H 0.97003 * 120.00140 * 174.97007 * 19 18 16 38 38 H 1.08997 * 115.54559 * 329.17207 * 24 15 13 39 39 H 1.08996 * 117.49400 * 0.02562 * 25 24 15 40 40 H 1.08994 * 117.49503 * 145.02188 * 25 24 15 41 41 H 1.08992 * 117.49573 * 214.97881 * 26 24 15 42 42 H 1.08997 * 117.49824 * 359.97438 * 26 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2841 1.1067 0.0000 4 6 3.5505 0.6572 0.0006 5 7 3.5224 -0.6861 0.0066 6 6 2.2746 -1.0941 0.0006 7 16 1.7391 -2.7728 0.0009 8 6 3.3418 -3.6140 0.0017 9 6 3.1261 -5.1055 0.0013 10 6 3.0145 -5.8844 -1.0977 11 6 2.8296 -7.2024 -0.6531 12 6 2.8299 -7.1598 0.7129 13 6 2.6651 -8.3063 1.6102 14 8 2.4018 -9.4038 1.1535 15 7 2.8050 -8.1461 2.9411 16 6 2.5544 -9.1927 3.7863 17 1 1.9838 -9.0329 4.6893 18 6 3.0341 -10.4617 3.4827 19 7 4.0118 -10.6046 2.6168 20 14 2.2888 -11.9638 4.3061 21 1 2.9714 -13.1876 3.8145 22 1 2.4601 -11.8579 5.7773 23 1 0.8419 -12.0399 3.9804 24 6 3.2254 -6.8514 3.4828 25 6 3.4454 -6.7558 4.9939 26 6 2.2235 -6.0914 4.3544 27 8 3.0144 -5.8776 1.0903 28 1 -0.3633 0.0006 1.0277 29 1 -0.3633 0.8898 -0.5142 30 1 -0.3632 -0.8901 -0.5134 31 1 1.9688 2.1397 -0.0004 32 1 4.4392 1.2709 0.0011 33 1 3.9019 -3.3277 0.8918 34 1 3.9026 -3.3281 -0.8882 35 1 3.0627 -5.5547 -2.1250 36 1 2.7089 -8.0801 -1.2707 37 1 4.3958 -11.4813 2.4591 38 1 3.8812 -6.2637 2.8405 39 1 3.2777 -7.6562 5.5848 40 1 4.2456 -6.1047 5.3457 41 1 2.2206 -5.0036 4.2857 42 1 1.2515 -6.5544 4.5243 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299293112.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:09:06 Heat of formation + Delta-G solvation = 77.014912 kcal Electronic energy + Delta-G solvation = -27410.454120 eV Core-core repulsion = 23486.033639 eV Total energy + Delta-G solvation = -3924.420481 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.64493 -42.72853 -40.26246 -37.89825 -35.00508 -34.93219 -34.29914 -33.16136 -32.74941 -30.63850 -28.78164 -27.86481 -26.72611 -23.83129 -23.11096 -22.89497 -22.75867 -22.37844 -21.80583 -21.30346 -19.35344 -18.80029 -17.98871 -17.57191 -16.97946 -16.79966 -16.75487 -16.54129 -15.95244 -15.57328 -15.36536 -15.22712 -15.07539 -14.71791 -14.69422 -14.20812 -14.06909 -13.96590 -13.86220 -13.70005 -13.50323 -13.24412 -12.96323 -12.90397 -12.77962 -12.29812 -12.12383 -11.90135 -11.72388 -11.30228 -11.13822 -10.94194 -10.86128 -10.68386 -10.37792 -10.32477 -9.46786 -9.10814 -8.47008 -8.26772 -6.07533 -0.27304 0.47859 0.91439 0.94965 1.37120 1.46960 1.50664 1.56978 1.72882 2.00579 2.04333 2.27212 2.58466 2.92757 3.05773 3.30193 3.45145 3.84094 3.88222 3.93181 3.97828 4.02930 4.17003 4.25001 4.34942 4.40210 4.41241 4.47074 4.64328 4.67954 4.68250 4.82527 4.83881 4.90792 5.04524 5.18185 5.25165 5.39401 5.42955 5.45077 5.72308 5.92115 5.96855 6.14582 6.87319 6.87435 7.02696 7.48709 8.12229 8.80627 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.020421 B = 0.002604 C = 0.002469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.822856 B =10748.464990 C =11339.871549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.450 5.450 3 C -0.032 4.032 4 C -0.047 4.047 5 N -0.520 5.520 6 C 0.160 3.840 7 S -0.003 6.003 8 C -0.002 4.002 9 C -0.016 4.016 10 C -0.171 4.171 11 C -0.163 4.163 12 C -0.044 4.044 13 C 0.525 3.475 14 O -0.562 6.562 15 N -0.418 5.418 16 C -0.363 4.363 17 H 0.091 0.909 18 C 0.020 3.980 19 N -0.861 5.861 20 Si 0.980 3.020 21 H -0.285 1.285 22 H -0.252 1.252 23 H -0.278 1.278 24 C 0.039 3.961 25 C -0.162 4.162 26 C -0.173 4.173 27 O -0.155 6.155 28 H 0.090 0.910 29 H 0.119 0.881 30 H 0.087 0.913 31 H 0.218 0.782 32 H 0.191 0.809 33 H 0.110 0.890 34 H 0.138 0.862 35 H 0.189 0.811 36 H 0.152 0.848 37 H 0.265 0.735 38 H 0.115 0.885 39 H 0.091 0.909 40 H 0.117 0.883 41 H 0.117 0.883 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.988 25.606 -5.158 26.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.135 5.135 3 C -0.168 4.168 4 C -0.196 4.196 5 N -0.244 5.244 6 C -0.210 4.210 7 S 0.229 5.771 8 C -0.150 4.150 9 C -0.069 4.069 10 C -0.192 4.192 11 C -0.184 4.184 12 C -0.098 4.098 13 C 0.314 3.686 14 O -0.445 6.445 15 N -0.135 5.135 16 C -0.489 4.489 17 H 0.109 0.891 18 C -0.188 4.188 19 N -0.495 5.495 20 Si 0.804 3.196 21 H -0.211 1.211 22 H -0.176 1.176 23 H -0.204 1.204 24 C -0.066 4.066 25 C -0.199 4.199 26 C -0.211 4.211 27 O -0.051 6.051 28 H 0.108 0.892 29 H 0.137 0.863 30 H 0.106 0.894 31 H 0.234 0.766 32 H 0.208 0.792 33 H 0.128 0.872 34 H 0.157 0.843 35 H 0.206 0.794 36 H 0.169 0.831 37 H 0.074 0.926 38 H 0.132 0.868 39 H 0.109 0.891 40 H 0.135 0.865 41 H 0.135 0.865 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -5.614 24.086 -5.157 25.263 hybrid contribution 0.591 -0.175 0.077 0.621 sum -5.023 23.910 -5.079 24.955 Atomic orbital electron populations 1.22403 0.74000 1.06311 1.05125 1.45759 1.08774 1.04872 1.54127 1.23492 0.90298 0.93555 1.09441 1.22791 0.98406 0.90313 1.08120 1.70687 1.17848 1.13961 1.21881 1.25145 0.89110 0.95133 1.11564 1.85760 1.09732 0.87743 1.93820 1.21677 0.97546 0.86111 1.09667 1.22045 1.07219 0.92683 0.84995 1.21788 1.05850 0.90851 1.00738 1.21997 1.04262 0.99556 0.92564 1.22657 1.09368 0.82341 0.95473 1.16879 0.83579 0.85599 0.82580 1.90664 1.53151 1.25196 1.75507 1.42881 1.57193 1.09375 1.04082 1.19243 1.35627 0.87217 1.06856 0.89131 1.26241 0.94182 1.02258 0.96113 1.69962 1.21830 1.24777 1.32896 0.85228 0.78302 0.77153 0.78955 1.21050 1.17579 1.20354 1.22062 1.02810 0.87838 0.93848 1.23187 1.00287 1.02736 0.93678 1.23258 0.94342 0.99686 1.03819 1.84229 1.69484 1.16873 1.34510 0.89183 0.86253 0.89448 0.76570 0.79237 0.87157 0.84349 0.79358 0.83066 0.92612 0.86767 0.89074 0.86504 0.86463 0.90110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.55 11.01 127.77 1.41 1.95 16 2 N -0.45 -7.41 3.20 -547.26 -1.75 -9.16 16 3 C -0.03 -0.44 11.60 82.89 0.96 0.52 16 4 C -0.05 -0.86 11.84 83.42 0.99 0.12 16 5 N -0.52 -12.80 10.60 -196.47 -2.08 -14.88 16 6 C 0.16 3.61 7.96 179.69 1.43 5.04 16 7 S 0.00 -0.06 21.61 -56.49 -1.22 -1.28 16 8 C 0.00 -0.06 5.73 71.24 0.41 0.35 16 9 C -0.02 -0.50 6.57 24.98 0.16 -0.34 16 10 C -0.17 -5.12 10.77 22.07 0.24 -4.88 16 11 C -0.16 -6.40 10.63 22.41 0.24 -6.17 16 12 C -0.04 -2.02 6.78 24.06 0.16 -1.86 16 13 C 0.52 29.40 7.03 86.40 0.61 30.01 16 14 O -0.56 -35.75 14.36 -4.51 -0.06 -35.81 16 15 N -0.42 -22.41 2.83 -617.76 -1.75 -24.16 16 16 C -0.36 -20.35 7.94 84.10 0.67 -19.68 16 17 H 0.09 4.80 7.26 -2.91 -0.02 4.78 16 18 C 0.02 1.14 4.37 84.95 0.37 1.51 16 19 N -0.86 -53.17 11.59 21.68 0.25 -52.92 16 20 Si 0.98 45.45 29.60 68.60 2.03 47.48 16 21 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 22 H -0.25 -10.56 7.11 99.48 0.71 -9.85 16 23 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 24 C 0.04 1.68 5.19 44.99 0.23 1.91 16 25 C -0.16 -5.88 9.80 30.62 0.30 -5.58 16 26 C -0.17 -6.04 10.36 30.62 0.32 -5.73 16 27 O -0.15 -5.98 7.42 -5.43 -0.04 -6.02 16 28 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.12 0.32 8.14 -2.38 -0.02 0.30 16 30 H 0.09 0.84 7.73 -2.39 -0.02 0.82 16 31 H 0.22 0.97 8.06 -2.91 -0.02 0.95 16 32 H 0.19 2.48 8.06 -2.91 -0.02 2.45 16 33 H 0.11 2.73 8.14 -2.40 -0.02 2.71 16 34 H 0.14 2.88 8.14 -2.40 -0.02 2.86 16 35 H 0.19 4.07 8.06 -2.91 -0.02 4.05 16 36 H 0.15 5.94 8.06 -2.91 -0.02 5.91 16 37 H 0.26 15.61 8.32 -92.71 -0.77 14.84 16 38 H 0.11 4.81 5.92 -2.39 -0.01 4.80 16 39 H 0.09 3.65 6.73 -2.39 -0.02 3.63 16 40 H 0.12 3.48 8.14 -2.39 -0.02 3.46 16 41 H 0.12 3.36 8.14 -2.39 -0.02 3.34 16 42 H 0.08 3.00 8.14 -2.39 -0.02 2.99 16 Total: -1.00 -80.48 375.30 4.92 -75.56 By element: Atomic # 1 Polarization: 22.94 SS G_CDS: 1.05 Total: 23.99 kcal Atomic # 6 Polarization: -11.31 SS G_CDS: 8.49 Total: -2.81 kcal Atomic # 7 Polarization: -95.79 SS G_CDS: -5.33 Total: -101.12 kcal Atomic # 8 Polarization: -41.72 SS G_CDS: -0.11 Total: -41.83 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Atomic # 16 Polarization: -0.06 SS G_CDS: -1.22 Total: -1.28 kcal Total: -80.48 4.92 -75.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299293112.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.578 kcal (2) G-P(sol) polarization free energy of solvation -80.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.563 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds