Wall clock time and date at job start Wed Apr 1 2020 04:36:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.80998 * 1 3 3 C 1.76204 * 99.99943 * 2 1 4 4 N 1.32523 * 119.61655 * 0.02562 * 3 2 1 5 5 C 1.32090 * 121.87236 * 179.97438 * 4 3 2 6 6 O 1.35311 * 119.57831 * 179.97438 * 5 4 3 7 7 C 1.40720 * 120.84925 * 359.97438 * 5 4 3 8 8 C 1.47168 * 120.43147 * 180.02562 * 7 5 4 9 9 O 1.21658 * 119.99929 * 321.94667 * 8 7 5 10 10 N 1.34774 * 119.99602 * 141.94446 * 8 7 5 11 11 C 1.36936 * 120.00431 * 7.56918 * 10 8 7 12 12 H 1.07995 * 119.99539 * 314.43020 * 11 10 8 13 13 C 1.38994 * 119.99860 * 134.42997 * 11 10 8 14 14 N 1.31407 * 119.99599 * 156.39831 * 13 11 10 15 15 Si 1.86795 * 120.00344 * 336.39577 * 13 11 10 16 16 H 1.48501 * 109.47045 * 84.14425 * 15 13 11 17 17 H 1.48500 * 109.47519 * 204.14692 * 15 13 11 18 18 H 1.48505 * 109.47058 * 324.15031 * 15 13 11 19 19 C 1.46504 * 119.99721 * 187.56711 * 10 8 7 20 20 C 1.55235 * 110.46787 * 60.74168 * 19 10 8 21 21 C 1.54892 * 102.58981 * 203.39458 * 20 19 10 22 22 C 1.54266 * 104.30889 * 37.93182 * 21 20 19 23 23 C 1.53875 * 106.60161 * 336.32509 * 22 21 20 24 24 C 1.39843 * 119.13775 * 0.28041 * 7 5 4 25 25 C 1.39562 * 118.30041 * 359.43358 * 24 7 5 26 26 C 1.43199 * 120.46611 * 180.26018 * 25 24 7 27 27 N 3.64661 * 171.15728 * 0.04624 * 2 1 3 28 28 H 1.09002 * 109.47217 * 59.99424 * 1 2 3 29 29 H 1.08996 * 109.47380 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47020 * 299.99741 * 1 2 3 31 31 H 0.96693 * 114.00443 * 270.02470 * 6 5 4 32 32 H 0.96995 * 119.99377 * 179.97438 * 14 13 11 33 33 H 1.09002 * 110.43533 * 183.39342 * 19 10 8 34 34 H 1.08999 * 110.89957 * 85.09983 * 20 19 10 35 35 H 1.09003 * 110.77034 * 321.62543 * 20 19 10 36 36 H 1.08996 * 110.48306 * 279.18965 * 21 20 19 37 37 H 1.08999 * 110.48402 * 156.67719 * 21 20 19 38 38 H 1.09003 * 110.03346 * 95.61323 * 22 21 20 39 39 H 1.09003 * 110.03099 * 216.99114 * 22 21 20 40 40 H 1.08994 * 110.02969 * 119.28640 * 23 22 21 41 41 H 1.09002 * 110.03003 * 240.66693 * 23 22 21 42 42 H 1.08004 * 120.85127 * 179.70957 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1159 1.7353 0.0000 4 7 1.0951 2.5803 0.0005 5 6 1.2730 3.8891 0.0010 6 8 0.1970 4.7095 0.0010 7 6 2.5674 4.4414 0.0016 8 6 2.7550 5.9010 0.0028 9 8 2.0098 6.6106 -0.6462 10 7 3.7524 6.4516 0.7228 11 6 4.6838 5.6501 1.3271 12 1 4.3685 4.7755 1.8767 13 6 6.0350 5.9621 1.2332 14 7 6.8762 5.5195 2.1406 15 14 6.6553 7.0105 -0.1829 16 1 6.4740 8.4468 0.1480 17 1 8.0963 6.7330 -0.4103 18 1 5.8886 6.6853 -1.4125 19 6 3.8402 7.9076 0.8589 20 6 2.5676 8.4658 1.5507 21 6 2.5417 9.9388 1.0722 22 6 3.0177 9.8718 -0.3937 23 6 3.8433 8.5804 -0.5293 24 6 3.6730 3.5851 -0.0044 25 6 3.4437 2.2085 0.0015 26 6 4.5420 1.2895 0.0013 27 7 5.4133 0.5606 0.0005 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.1158 4.9480 -0.8823 32 1 7.8191 5.7370 2.0748 33 1 4.7335 8.1844 1.4190 34 1 2.6601 8.4137 2.6355 35 1 1.6785 7.9339 1.2119 36 1 3.2241 10.5453 1.6676 37 1 1.5296 10.3398 1.1268 38 1 2.1588 9.8381 -1.0640 39 1 3.6375 10.7382 -0.6249 40 1 3.3850 7.9200 -1.2654 41 1 4.8642 8.8196 -0.8269 42 1 4.6786 3.9791 -0.0088 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330737411.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:21 Heat of formation + Delta-G solvation = 4.151637 kcal Electronic energy + Delta-G solvation = -28916.172949 eV Core-core repulsion = 24988.592880 eV Total energy + Delta-G solvation = -3927.580070 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.63528 -39.22262 -37.30299 -36.42194 -36.00320 -34.69777 -32.60112 -32.04336 -30.65497 -29.01223 -28.22752 -27.37509 -25.48100 -24.27209 -23.71502 -21.29460 -20.12939 -19.51348 -18.96736 -18.70800 -17.47839 -17.39191 -16.21511 -16.15621 -15.46977 -15.18129 -14.82672 -14.46699 -14.28705 -14.00987 -13.94038 -13.47065 -13.42652 -13.39234 -13.00516 -12.93389 -12.74712 -12.66316 -12.55046 -12.43853 -12.11284 -11.61345 -11.57317 -11.17830 -11.05665 -10.87552 -10.76991 -10.65165 -10.59425 -10.26267 -10.12860 -9.94981 -9.71698 -9.65470 -9.30738 -9.17762 -8.67523 -7.87632 -7.63270 -6.72548 -4.38350 0.47966 1.13814 1.34520 2.01409 2.81055 2.89424 2.97412 3.11689 3.16862 3.53666 3.70292 3.88223 3.96422 4.11381 4.19004 4.67497 4.90259 5.02925 5.08251 5.14410 5.15196 5.18921 5.29982 5.44343 5.55593 5.74011 5.91545 5.98018 6.04022 6.06592 6.09004 6.10664 6.18393 6.34296 6.37766 6.48904 6.53382 6.74171 6.83196 6.90865 7.24092 7.49370 7.67241 7.76070 7.84827 8.00919 8.68423 9.06469 9.41390 10.34413 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.012591 B = 0.004553 C = 0.003569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2223.324286 B = 6148.721637 C = 7843.890560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 S -0.058 6.058 3 C 0.188 3.812 4 N -0.517 5.517 5 C 0.389 3.611 6 O -0.465 6.465 7 C -0.169 4.169 8 C 0.535 3.465 9 O -0.572 6.572 10 N -0.445 5.445 11 C -0.368 4.368 12 H 0.104 0.896 13 C 0.077 3.923 14 N -0.838 5.838 15 Si 0.864 3.136 16 H -0.262 1.262 17 H -0.286 1.286 18 H -0.258 1.258 19 C 0.137 3.863 20 C -0.129 4.129 21 C -0.120 4.120 22 C -0.111 4.111 23 C -0.153 4.153 24 C 0.057 3.943 25 C -0.093 4.093 26 C 0.266 3.734 27 N -0.406 5.406 28 H 0.091 0.909 29 H 0.100 0.900 30 H 0.092 0.908 31 H 0.408 0.592 32 H 0.280 0.720 33 H 0.091 0.909 34 H 0.062 0.938 35 H 0.081 0.919 36 H 0.059 0.941 37 H 0.060 0.940 38 H 0.062 0.938 39 H 0.052 0.948 40 H 0.095 0.905 41 H 0.051 0.949 42 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.696 -1.458 -4.643 10.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.304 4.304 2 S 0.182 5.818 3 C -0.065 4.065 4 N -0.240 5.240 5 C 0.205 3.795 6 O -0.273 6.273 7 C -0.179 4.179 8 C 0.324 3.676 9 O -0.456 6.456 10 N -0.163 5.163 11 C -0.495 4.495 12 H 0.122 0.878 13 C -0.134 4.134 14 N -0.470 5.470 15 Si 0.689 3.311 16 H -0.187 1.187 17 H -0.213 1.213 18 H -0.182 1.182 19 C 0.034 3.966 20 C -0.168 4.168 21 C -0.158 4.158 22 C -0.149 4.149 23 C -0.191 4.191 24 C 0.028 3.972 25 C -0.106 4.106 26 C -0.050 4.050 27 N -0.082 5.082 28 H 0.110 0.890 29 H 0.118 0.882 30 H 0.111 0.889 31 H 0.268 0.732 32 H 0.090 0.910 33 H 0.109 0.891 34 H 0.080 0.920 35 H 0.100 0.900 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.081 0.919 39 H 0.071 0.929 40 H 0.114 0.886 41 H 0.070 0.930 42 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -8.637 -3.583 -4.254 10.273 hybrid contribution 0.147 2.236 -0.816 2.385 sum -8.490 -1.347 -5.070 9.979 Atomic orbital electron populations 1.23467 0.93620 1.05950 1.07365 1.85995 1.08210 0.97167 1.90386 1.22894 0.89328 0.98330 0.95970 1.67456 1.32898 1.03824 1.19845 1.19187 0.85510 0.85175 0.89589 1.84594 1.45153 1.63340 1.34174 1.21008 0.92425 0.96679 1.07761 1.17593 0.83703 0.85627 0.80694 1.90617 1.48695 1.61993 1.44336 1.43509 1.24494 1.04553 1.43725 1.19081 0.85771 1.11104 1.33530 0.87832 1.25422 0.95898 0.96102 0.95989 1.69798 1.04877 1.42287 1.30086 0.87179 0.78320 0.81349 0.84241 1.18741 1.21251 1.18226 1.22183 0.98373 0.80697 0.95377 1.22840 0.99325 0.95177 0.99441 1.22246 1.00393 0.96913 0.96206 1.21948 0.99274 0.96910 0.96781 1.22806 0.99409 0.97459 0.99433 1.22642 1.02292 0.88772 0.83452 1.16426 0.87876 0.91686 1.14581 1.25005 0.92912 0.93192 0.93857 1.81173 1.09102 1.09048 1.08838 0.89046 0.88157 0.88941 0.73168 0.90953 0.89121 0.91971 0.90037 0.92236 0.92119 0.91905 0.92905 0.88632 0.93005 0.79832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 9.64 101.05 0.97 -0.32 16 2 S -0.06 -0.74 21.68 -107.50 -2.33 -3.07 16 3 C 0.19 2.90 7.02 -16.22 -0.11 2.78 16 4 N -0.52 -8.06 9.11 -11.34 -0.10 -8.16 16 5 C 0.39 6.50 7.73 -16.50 -0.13 6.37 16 6 O -0.46 -7.17 12.25 -34.45 -0.42 -7.60 16 7 C -0.17 -3.14 5.45 -104.73 -0.57 -3.71 16 8 C 0.54 10.96 6.29 -12.64 -0.08 10.88 16 9 O -0.57 -11.80 12.43 -11.60 -0.14 -11.95 16 10 N -0.44 -9.53 2.04 -107.06 -0.22 -9.74 16 11 C -0.37 -8.52 6.49 -14.99 -0.10 -8.62 16 12 H 0.10 2.55 6.74 -52.49 -0.35 2.20 16 13 C 0.08 1.84 5.02 -17.45 -0.09 1.75 16 14 N -0.84 -21.27 13.96 55.50 0.77 -20.50 16 15 Si 0.86 18.67 23.73 -169.99 -4.03 14.64 16 16 H -0.26 -5.46 5.97 56.52 0.34 -5.12 16 17 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 18 H -0.26 -5.61 7.11 56.52 0.40 -5.20 16 19 C 0.14 2.75 2.03 -66.08 -0.13 2.61 16 20 C -0.13 -2.30 6.31 -24.55 -0.15 -2.46 16 21 C -0.12 -1.79 6.82 -25.07 -0.17 -1.96 16 22 C -0.11 -1.74 6.80 -25.61 -0.17 -1.91 16 23 C -0.15 -2.87 5.00 -25.61 -0.13 -3.00 16 24 C 0.06 1.03 7.63 -38.49 -0.29 0.74 16 25 C -0.09 -1.56 5.77 -106.45 -0.61 -2.17 16 26 C 0.27 4.66 14.28 -22.47 -0.32 4.34 16 27 N -0.41 -7.57 18.54 41.84 0.78 -6.79 16 28 H 0.09 0.86 8.12 -51.92 -0.42 0.44 16 29 H 0.10 0.71 8.14 -51.92 -0.42 0.29 16 30 H 0.09 0.94 8.12 -51.91 -0.42 0.52 16 31 H 0.41 4.64 9.06 45.56 0.41 5.05 16 32 H 0.28 6.71 8.31 -40.82 -0.34 6.37 16 33 H 0.09 1.91 6.11 -51.93 -0.32 1.59 16 34 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.08 1.56 6.50 -51.93 -0.34 1.23 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.10 1.94 5.56 -51.93 -0.29 1.66 16 41 H 0.05 0.98 5.25 -51.93 -0.27 0.70 16 42 H 0.18 3.61 5.88 -52.48 -0.31 3.30 16 LS Contribution 354.72 15.07 5.35 5.35 Total: -1.00 -26.57 354.72 -6.50 -33.06 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: -4.04 Total: 9.45 kcal Atomic # 6 Polarization: 7.41 SS G_CDS: -2.09 Total: 5.32 kcal Atomic # 7 Polarization: -46.43 SS G_CDS: 1.23 Total: -45.20 kcal Atomic # 8 Polarization: -18.98 SS G_CDS: -0.57 Total: -19.54 kcal Atomic # 14 Polarization: 18.67 SS G_CDS: -4.03 Total: 14.64 kcal Atomic # 16 Polarization: -0.74 SS G_CDS: -2.33 Total: -3.07 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -26.57 -6.50 -33.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330737411.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.213 kcal (2) G-P(sol) polarization free energy of solvation -26.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.062 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds