Wall clock time and date at job start Wed Apr 1 2020 03:59:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46500 * 109.47241 * 2 1 4 4 C 1.46498 * 120.00239 * 273.81412 * 3 2 1 5 5 C 1.50698 * 109.47327 * 294.55101 * 4 3 2 6 6 H 1.07998 * 119.99766 * 0.02562 * 5 4 3 7 7 C 1.37872 * 120.00095 * 179.97438 * 5 4 3 8 8 N 1.31523 * 120.00149 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00099 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47046 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47349 * 120.00129 * 9 7 5 12 12 H 1.48505 * 109.46648 * 240.00271 * 9 7 5 13 13 S 1.65605 * 119.99736 * 93.81265 * 3 2 1 14 14 O 1.42102 * 106.40333 * 170.96262 * 13 3 2 15 15 O 1.42103 * 106.40110 * 38.04664 * 13 3 2 16 16 N 1.65591 * 107.21853 * 284.50603 * 13 3 2 17 17 C 1.46496 * 120.00145 * 289.21829 * 16 13 3 18 18 C 1.52998 * 109.47391 * 292.71396 * 17 16 13 19 19 C 1.53005 * 109.46850 * 52.70979 * 17 16 13 20 20 C 1.50695 * 109.47535 * 172.71104 * 17 16 13 21 21 N 1.29031 * 124.91787 * 305.02636 * 20 17 16 22 22 C 1.31779 * 117.12631 * 179.97438 * 21 20 17 23 23 C 1.33637 * 114.50233 * 359.97438 * 22 21 20 24 24 C 1.50702 * 126.03550 * 180.02562 * 23 22 21 25 25 S 1.70982 * 124.91736 * 124.72139 * 20 17 16 26 26 H 1.09001 * 109.47115 * 302.27001 * 1 2 3 27 27 H 1.09001 * 109.47516 * 62.27147 * 1 2 3 28 28 H 1.08994 * 109.47377 * 182.26907 * 1 2 3 29 29 H 1.09003 * 109.47517 * 240.00490 * 2 1 3 30 30 H 1.08999 * 109.47140 * 120.00130 * 2 1 3 31 31 H 1.09002 * 109.47285 * 54.55648 * 4 3 2 32 32 H 1.09004 * 109.47067 * 174.55167 * 4 3 2 33 33 H 0.96993 * 119.99736 * 180.02562 * 8 7 5 34 34 H 0.97002 * 120.00450 * 109.49746 * 16 13 3 35 35 H 1.08998 * 109.47371 * 68.22409 * 18 17 16 36 36 H 1.09000 * 109.47562 * 188.22535 * 18 17 16 37 37 H 1.09003 * 109.47108 * 308.22083 * 18 17 16 38 38 H 1.08993 * 109.46730 * 46.53020 * 19 17 16 39 39 H 1.09007 * 109.47132 * 166.52354 * 19 17 16 40 40 H 1.08993 * 109.47292 * 286.52304 * 19 17 16 41 41 H 1.07998 * 122.74707 * 179.97438 * 22 21 20 42 42 H 1.08994 * 109.47564 * 90.02553 * 24 23 22 43 43 H 1.09004 * 109.46678 * 210.02457 * 24 23 22 44 44 H 1.08993 * 109.47180 * 330.01526 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1829 2.1000 -1.2659 5 6 3.2661 1.4412 -2.0805 6 1 3.7802 0.5735 -1.6941 7 6 3.6002 1.9454 -3.3194 8 7 2.9738 3.0017 -3.7902 9 14 4.9424 1.1283 -4.3295 10 1 5.4877 -0.0326 -3.5812 11 1 4.3764 0.6636 -5.6213 12 1 6.0307 2.1050 -4.5886 13 16 2.3842 2.1300 1.4310 14 8 3.0208 3.3544 1.0920 15 8 2.9869 1.1435 2.2574 16 7 0.9501 2.5331 2.1541 17 6 0.1232 3.6049 1.5940 18 6 0.8445 4.9441 1.7577 19 6 -0.1222 3.3360 0.1079 20 6 -1.1964 3.6530 2.3203 21 7 -2.0028 2.6547 2.4538 22 6 -3.1188 2.8689 3.1211 23 6 -3.2616 4.1172 3.5761 24 6 -4.4310 4.6441 4.3674 25 16 -1.8383 5.0367 3.0930 26 1 -0.3633 0.5487 0.8689 27 1 -0.3634 0.4781 -0.9096 28 1 -0.3634 -1.0268 0.0407 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.2454 2.0768 -1.8215 32 1 2.4594 3.1347 -1.0629 33 1 3.2085 3.3562 -4.6620 34 1 0.6593 2.0623 2.9508 35 1 1.7256 4.9631 1.1163 36 1 0.1730 5.7554 1.4765 37 1 1.1489 5.0683 2.7970 38 1 -0.4124 2.2945 -0.0298 39 1 -0.9197 3.9861 -0.2521 40 1 0.7907 3.5361 -0.4530 41 1 -3.8575 2.0986 3.2865 42 1 -4.2407 4.5071 5.4319 43 1 -4.5643 5.7050 4.1558 44 1 -5.3336 4.1015 4.0868 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336884689.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:59:24 Heat of formation + Delta-G solvation = -29.437406 kcal Electronic energy + Delta-G solvation = -28095.883432 eV Core-core repulsion = 24302.290783 eV Total energy + Delta-G solvation = -3793.592648 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.112 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.03523 -37.53327 -36.50664 -35.98383 -35.21700 -32.67206 -32.59534 -30.58600 -29.86004 -27.35262 -27.25759 -26.55765 -24.42564 -23.14107 -21.76012 -21.50720 -19.55304 -18.57008 -18.04796 -17.28066 -16.90203 -16.32242 -16.06210 -15.27213 -15.10778 -14.73973 -14.39380 -14.05130 -13.80340 -13.64476 -13.41130 -13.30694 -13.06678 -12.90864 -12.85783 -12.51997 -12.09009 -12.04660 -11.94554 -11.79643 -11.59481 -11.44279 -11.39075 -11.29199 -11.18543 -10.91057 -10.81407 -10.73677 -10.49806 -10.29308 -10.00720 -9.71387 -9.52130 -9.40609 -9.34304 -8.90706 -8.46997 -7.99237 -6.07569 -4.11463 0.49163 1.08012 1.30940 1.62093 2.69637 3.29614 3.37708 3.42050 3.50846 3.85023 4.15491 4.43082 4.66665 4.74824 4.86382 4.99395 5.06237 5.13976 5.15509 5.27469 5.33151 5.45210 5.54950 5.59401 5.71466 5.81049 5.86256 5.88923 6.00751 6.09905 6.14816 6.25784 6.39647 6.51636 6.59440 6.74036 6.80298 7.14136 7.32412 7.45960 7.62797 7.66364 7.90665 8.23866 8.92760 9.53757 11.00953 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.018570 B = 0.003473 C = 0.003416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.414845 B = 8059.294147 C = 8193.701501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.121 3.879 3 N -0.989 5.989 4 C 0.246 3.754 5 C -0.530 4.530 6 H 0.063 0.937 7 C 0.062 3.938 8 N -0.892 5.892 9 Si 0.896 3.104 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.283 1.283 13 S 2.782 3.218 14 O -0.971 6.971 15 O -0.994 6.994 16 N -1.119 6.119 17 C 0.269 3.731 18 C -0.190 4.190 19 C -0.193 4.193 20 C 0.052 3.948 21 N -0.456 5.456 22 C 0.033 3.967 23 C -0.237 4.237 24 C -0.073 4.073 25 S 0.139 5.861 26 H 0.060 0.940 27 H 0.062 0.938 28 H 0.055 0.945 29 H 0.089 0.911 30 H 0.067 0.933 31 H 0.031 0.969 32 H 0.057 0.943 33 H 0.263 0.737 34 H 0.411 0.589 35 H 0.114 0.886 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.090 0.910 39 H 0.069 0.931 40 H 0.097 0.903 41 H 0.173 0.827 42 H 0.075 0.925 43 H 0.069 0.931 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.819 3.416 14.188 20.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.005 4.005 3 N -0.831 5.831 4 C 0.124 3.876 5 C -0.570 4.570 6 H 0.081 0.919 7 C -0.140 4.140 8 N -0.531 5.531 9 Si 0.723 3.277 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.209 1.209 13 S 2.791 3.209 14 O -0.954 6.954 15 O -0.978 6.978 16 N -0.876 5.876 17 C 0.176 3.824 18 C -0.249 4.249 19 C -0.252 4.252 20 C -0.227 4.227 21 N -0.169 5.169 22 C -0.118 4.118 23 C -0.358 4.358 24 C -0.132 4.132 25 S 0.395 5.605 26 H 0.079 0.921 27 H 0.081 0.919 28 H 0.074 0.926 29 H 0.107 0.893 30 H 0.086 0.914 31 H 0.049 0.951 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.244 0.756 35 H 0.133 0.867 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.109 0.891 39 H 0.088 0.912 40 H 0.115 0.885 41 H 0.190 0.810 42 H 0.093 0.907 43 H 0.088 0.912 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -13.385 4.328 14.116 19.929 hybrid contribution -0.626 -1.417 -0.326 1.583 sum -14.011 2.912 13.790 19.873 Atomic orbital electron populations 1.22357 0.97102 1.01335 1.02629 1.21093 0.93050 0.83049 1.03338 1.57614 1.81055 1.21763 1.22662 1.19260 0.97213 0.92469 0.78615 1.21507 1.19560 1.14134 1.01808 0.91879 1.24939 0.96577 0.94974 0.97549 1.69930 1.41556 1.22644 1.18967 0.86482 0.81773 0.79507 0.79909 1.19672 1.21004 1.20893 1.01882 0.72859 0.73423 0.72743 1.93551 1.73238 1.44807 1.83810 1.93552 1.74155 1.61288 1.68842 1.56352 1.41916 1.47444 1.41894 1.18529 0.82834 0.88290 0.92702 1.22791 1.03298 0.94271 1.04579 1.23021 1.05241 1.05065 0.91906 1.27121 1.00950 0.92264 1.02408 1.66177 1.03008 1.31462 1.16225 1.21717 0.95847 0.95714 0.98514 1.26129 1.02461 0.98019 1.09186 1.20200 0.93298 1.01244 0.98487 1.84003 1.12149 1.16096 1.48301 0.92080 0.91944 0.92579 0.89274 0.91439 0.95098 0.92570 0.92744 0.75603 0.86730 0.91332 0.91523 0.89090 0.91207 0.88462 0.81040 0.90658 0.91158 0.90340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.64 8.77 37.15 0.33 -2.32 16 2 C 0.12 2.15 6.28 -4.05 -0.03 2.13 16 3 N -0.99 -20.02 1.91 -115.67 -0.22 -20.24 16 4 C 0.25 5.89 3.39 -5.20 -0.02 5.88 16 5 C -0.53 -14.30 8.64 -34.44 -0.30 -14.60 16 6 H 0.06 1.70 7.65 -52.49 -0.40 1.30 16 7 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 8 N -0.89 -25.27 13.29 55.43 0.74 -24.54 16 9 Si 0.90 21.27 29.54 -169.99 -5.02 16.25 16 10 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 13 S 2.78 54.27 5.59 -107.50 -0.60 53.67 16 14 O -0.97 -21.24 13.40 -57.17 -0.77 -22.01 16 15 O -0.99 -21.32 17.09 -57.17 -0.98 -22.30 16 16 N -1.12 -17.21 5.37 -0.40 0.00 -17.21 16 17 C 0.27 3.91 1.09 -132.97 -0.14 3.76 16 18 C -0.19 -2.65 7.39 37.16 0.27 -2.38 16 19 C -0.19 -3.05 6.76 37.16 0.25 -2.80 16 20 C 0.05 0.67 5.83 -13.46 -0.08 0.60 16 21 N -0.46 -6.00 10.54 -11.86 -0.13 -6.12 16 22 C 0.03 0.36 11.25 -19.19 -0.22 0.14 16 23 C -0.24 -2.23 6.60 -35.92 -0.24 -2.46 16 24 C -0.07 -0.44 10.42 36.01 0.38 -0.07 16 25 S 0.14 1.45 21.43 -107.50 -2.30 -0.85 16 26 H 0.06 0.90 7.15 -51.93 -0.37 0.53 16 27 H 0.06 0.99 7.53 -51.93 -0.39 0.60 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.09 1.66 7.39 -51.93 -0.38 1.28 16 30 H 0.07 1.14 7.20 -51.93 -0.37 0.76 16 31 H 0.03 0.75 7.62 -51.93 -0.40 0.36 16 32 H 0.06 1.45 5.72 -51.93 -0.30 1.15 16 33 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 34 H 0.41 5.69 8.61 -34.47 -0.30 5.40 16 35 H 0.11 1.89 5.75 -51.93 -0.30 1.59 16 36 H 0.07 0.80 7.40 -51.93 -0.38 0.42 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.09 1.45 4.48 -51.93 -0.23 1.22 16 39 H 0.07 0.99 8.07 -51.93 -0.42 0.57 16 40 H 0.10 1.77 4.26 -51.93 -0.22 1.55 16 41 H 0.17 1.43 8.06 -52.49 -0.42 1.01 16 42 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 367.25 15.07 5.53 5.53 Total: -1.00 -32.06 367.25 -9.77 -41.83 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: -6.14 Total: 6.50 kcal Atomic # 6 Polarization: -10.63 SS G_CDS: 0.11 Total: -10.51 kcal Atomic # 7 Polarization: -68.50 SS G_CDS: 0.39 Total: -68.11 kcal Atomic # 8 Polarization: -42.56 SS G_CDS: -1.74 Total: -44.30 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: 55.72 SS G_CDS: -2.90 Total: 52.81 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.06 -9.77 -41.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336884689.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.391 kcal (2) G-P(sol) polarization free energy of solvation -32.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds