Wall clock time and date at job start Wed Apr 1 2020 03:59:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46500 * 109.47241 * 2 1 4 4 C 1.46498 * 120.00239 * 273.81412 * 3 2 1 5 5 C 1.50698 * 109.47327 * 294.55101 * 4 3 2 6 6 H 1.07998 * 119.99766 * 0.02562 * 5 4 3 7 7 C 1.37872 * 120.00095 * 179.97438 * 5 4 3 8 8 N 1.31523 * 120.00149 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00099 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47046 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47349 * 120.00129 * 9 7 5 12 12 H 1.48505 * 109.46648 * 240.00271 * 9 7 5 13 13 S 1.65605 * 119.99736 * 93.81265 * 3 2 1 14 14 O 1.42102 * 106.40333 * 170.96262 * 13 3 2 15 15 O 1.42103 * 106.40110 * 38.04664 * 13 3 2 16 16 N 1.65591 * 107.21853 * 284.50603 * 13 3 2 17 17 C 1.46496 * 120.00145 * 289.21829 * 16 13 3 18 18 C 1.52998 * 109.47391 * 292.71396 * 17 16 13 19 19 C 1.53005 * 109.46850 * 52.70979 * 17 16 13 20 20 C 1.50695 * 109.47535 * 172.71104 * 17 16 13 21 21 N 1.29031 * 124.91787 * 305.02636 * 20 17 16 22 22 C 1.31779 * 117.12631 * 179.97438 * 21 20 17 23 23 C 1.33637 * 114.50233 * 359.97438 * 22 21 20 24 24 C 1.50702 * 126.03550 * 180.02562 * 23 22 21 25 25 S 1.70982 * 124.91736 * 124.72139 * 20 17 16 26 26 H 1.09001 * 109.47115 * 302.27001 * 1 2 3 27 27 H 1.09001 * 109.47516 * 62.27147 * 1 2 3 28 28 H 1.08994 * 109.47377 * 182.26907 * 1 2 3 29 29 H 1.09003 * 109.47517 * 240.00490 * 2 1 3 30 30 H 1.08999 * 109.47140 * 120.00130 * 2 1 3 31 31 H 1.09002 * 109.47285 * 54.55648 * 4 3 2 32 32 H 1.09004 * 109.47067 * 174.55167 * 4 3 2 33 33 H 0.96993 * 119.99736 * 180.02562 * 8 7 5 34 34 H 0.97002 * 120.00450 * 109.49746 * 16 13 3 35 35 H 1.08998 * 109.47371 * 68.22409 * 18 17 16 36 36 H 1.09000 * 109.47562 * 188.22535 * 18 17 16 37 37 H 1.09003 * 109.47108 * 308.22083 * 18 17 16 38 38 H 1.08993 * 109.46730 * 46.53020 * 19 17 16 39 39 H 1.09007 * 109.47132 * 166.52354 * 19 17 16 40 40 H 1.08993 * 109.47292 * 286.52304 * 19 17 16 41 41 H 1.07998 * 122.74707 * 179.97438 * 22 21 20 42 42 H 1.08994 * 109.47564 * 90.02553 * 24 23 22 43 43 H 1.09004 * 109.46678 * 210.02457 * 24 23 22 44 44 H 1.08993 * 109.47180 * 330.01526 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1829 2.1000 -1.2659 5 6 3.2661 1.4412 -2.0805 6 1 3.7802 0.5735 -1.6941 7 6 3.6002 1.9454 -3.3194 8 7 2.9738 3.0017 -3.7902 9 14 4.9424 1.1283 -4.3295 10 1 5.4877 -0.0326 -3.5812 11 1 4.3764 0.6636 -5.6213 12 1 6.0307 2.1050 -4.5886 13 16 2.3842 2.1300 1.4310 14 8 3.0208 3.3544 1.0920 15 8 2.9869 1.1435 2.2574 16 7 0.9501 2.5331 2.1541 17 6 0.1232 3.6049 1.5940 18 6 0.8445 4.9441 1.7577 19 6 -0.1222 3.3360 0.1079 20 6 -1.1964 3.6530 2.3203 21 7 -2.0028 2.6547 2.4538 22 6 -3.1188 2.8689 3.1211 23 6 -3.2616 4.1172 3.5761 24 6 -4.4310 4.6441 4.3674 25 16 -1.8383 5.0367 3.0930 26 1 -0.3633 0.5487 0.8689 27 1 -0.3634 0.4781 -0.9096 28 1 -0.3634 -1.0268 0.0407 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.2454 2.0768 -1.8215 32 1 2.4594 3.1347 -1.0629 33 1 3.2085 3.3562 -4.6620 34 1 0.6593 2.0623 2.9508 35 1 1.7256 4.9631 1.1163 36 1 0.1730 5.7554 1.4765 37 1 1.1489 5.0683 2.7970 38 1 -0.4124 2.2945 -0.0298 39 1 -0.9197 3.9861 -0.2521 40 1 0.7907 3.5361 -0.4530 41 1 -3.8575 2.0986 3.2865 42 1 -4.2407 4.5071 5.4319 43 1 -4.5643 5.7050 4.1558 44 1 -5.3336 4.1015 4.0868 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336884689.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:59:23 Heat of formation + Delta-G solvation = -52.091673 kcal Electronic energy + Delta-G solvation = -28096.865794 eV Core-core repulsion = 24302.290783 eV Total energy + Delta-G solvation = -3794.575011 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.112 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.93967 -38.83425 -38.07973 -37.54385 -36.89552 -34.65744 -33.35521 -31.89495 -31.36752 -28.62248 -28.39297 -28.06086 -25.25468 -24.86772 -23.23045 -22.71946 -20.56571 -20.02390 -19.09792 -18.65404 -18.56967 -18.18461 -17.41161 -16.81392 -16.24478 -16.03943 -15.61305 -15.44224 -14.97966 -14.83915 -14.76401 -14.60838 -14.18908 -13.77569 -13.70949 -13.68873 -13.58179 -13.56515 -13.49066 -13.35557 -13.04489 -12.95718 -12.86497 -12.73405 -12.64558 -12.46984 -12.29468 -12.09397 -11.98488 -11.90024 -11.63096 -11.46370 -10.74960 -10.55969 -10.51200 -10.15917 -9.76953 -9.68096 -8.16728 -6.27947 -0.49888 -0.19882 0.35471 0.78765 1.40769 1.43271 1.54515 1.81387 2.06196 2.41868 2.57325 2.95071 3.14922 3.43291 3.66538 3.88164 3.99778 4.05345 4.14995 4.18756 4.30804 4.49035 4.52088 4.57446 4.73333 4.75859 4.77673 4.82726 4.91993 4.97438 5.06478 5.07549 5.21102 5.26225 5.30692 5.33755 5.35324 5.48497 5.57353 5.79237 5.88667 6.07979 6.19851 6.78451 6.82877 7.40730 8.91074 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.018570 B = 0.003473 C = 0.003416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.414845 B = 8059.294147 C = 8193.701501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.115 3.885 3 N -0.993 5.993 4 C 0.268 3.732 5 C -0.549 4.549 6 H 0.058 0.942 7 C 0.014 3.986 8 N -0.921 5.921 9 Si 0.956 3.044 10 H -0.269 1.269 11 H -0.274 1.274 12 H -0.281 1.281 13 S 2.796 3.204 14 O -0.997 6.997 15 O -1.015 7.015 16 N -1.102 6.102 17 C 0.270 3.730 18 C -0.191 4.191 19 C -0.191 4.191 20 C 0.020 3.980 21 N -0.471 5.471 22 C 0.011 3.989 23 C -0.219 4.219 24 C -0.075 4.075 25 S 0.166 5.834 26 H 0.065 0.935 27 H 0.050 0.950 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.023 0.977 32 H 0.034 0.966 33 H 0.266 0.734 34 H 0.421 0.579 35 H 0.085 0.915 36 H 0.090 0.910 37 H 0.078 0.922 38 H 0.087 0.913 39 H 0.081 0.919 40 H 0.068 0.932 41 H 0.193 0.807 42 H 0.089 0.911 43 H 0.079 0.921 44 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.742 3.302 15.535 23.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.011 4.011 3 N -0.835 5.835 4 C 0.144 3.856 5 C -0.589 4.589 6 H 0.076 0.924 7 C -0.186 4.186 8 N -0.560 5.560 9 Si 0.781 3.219 10 H -0.193 1.193 11 H -0.200 1.200 12 H -0.207 1.207 13 S 2.805 3.195 14 O -0.981 6.981 15 O -0.998 6.998 16 N -0.863 5.863 17 C 0.178 3.822 18 C -0.250 4.250 19 C -0.251 4.251 20 C -0.258 4.258 21 N -0.185 5.185 22 C -0.139 4.139 23 C -0.340 4.340 24 C -0.134 4.134 25 S 0.421 5.579 26 H 0.084 0.916 27 H 0.069 0.931 28 H 0.100 0.900 29 H 0.095 0.905 30 H 0.096 0.904 31 H 0.041 0.959 32 H 0.052 0.948 33 H 0.075 0.925 34 H 0.256 0.744 35 H 0.104 0.896 36 H 0.108 0.892 37 H 0.097 0.903 38 H 0.105 0.895 39 H 0.100 0.900 40 H 0.086 0.914 41 H 0.210 0.790 42 H 0.108 0.892 43 H 0.098 0.902 44 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -15.304 4.188 15.471 22.161 hybrid contribution -0.163 -1.333 -0.635 1.486 sum -15.467 2.855 14.835 21.621 Atomic orbital electron populations 1.22244 0.94815 1.02955 1.02226 1.21274 0.94957 0.81651 1.03207 1.57521 1.81566 1.22744 1.21648 1.18765 0.95811 0.91406 0.79585 1.21869 1.20328 1.14157 1.02543 0.92423 1.25717 0.98668 0.95548 0.98683 1.70027 1.42842 1.23723 1.19451 0.85539 0.79105 0.78584 0.78639 1.19304 1.19952 1.20709 1.01250 0.73301 0.72597 0.72324 1.93525 1.74552 1.45849 1.84182 1.93515 1.75296 1.61928 1.69111 1.55909 1.40914 1.47752 1.41720 1.18466 0.83909 0.87764 0.92050 1.22754 1.02626 0.94898 1.04698 1.22933 1.04096 1.05114 0.92909 1.26646 1.00648 0.93942 1.04580 1.66137 1.03761 1.32182 1.16466 1.22065 0.95796 0.96973 0.99092 1.26627 1.02477 0.97336 1.07583 1.20389 0.92407 1.01939 0.98700 1.83862 1.12275 1.14582 1.47217 0.91629 0.93066 0.89954 0.90485 0.90429 0.95910 0.94809 0.92494 0.74436 0.89629 0.89169 0.90319 0.89464 0.89982 0.91375 0.78998 0.89233 0.90179 0.88628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.83 8.77 71.98 0.63 -4.20 16 2 C 0.11 4.10 6.28 86.38 0.54 4.64 16 3 N -0.99 -41.38 1.91 -519.86 -1.00 -42.38 16 4 C 0.27 13.34 3.39 85.63 0.29 13.63 16 5 C -0.55 -30.40 8.64 25.60 0.22 -30.18 16 6 H 0.06 3.17 7.65 -2.91 -0.02 3.15 16 7 C 0.01 0.76 5.46 84.65 0.46 1.22 16 8 N -0.92 -53.25 13.29 21.45 0.28 -52.97 16 9 Si 0.96 44.00 29.54 68.60 2.03 46.02 16 10 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 11 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 12 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 13 S 2.80 111.66 5.59 -56.49 -0.32 111.34 16 14 O -1.00 -45.44 13.40 -128.00 -1.71 -47.15 16 15 O -1.01 -43.85 17.09 -128.00 -2.19 -46.04 16 16 N -1.10 -33.94 5.37 -155.19 -0.83 -34.77 16 17 C 0.27 7.81 1.09 2.86 0.00 7.82 16 18 C -0.19 -5.33 7.39 71.98 0.53 -4.80 16 19 C -0.19 -6.19 6.76 71.98 0.49 -5.70 16 20 C 0.02 0.49 5.83 88.52 0.52 1.01 16 21 N -0.47 -11.64 10.54 -191.45 -2.02 -13.66 16 22 C 0.01 0.21 11.25 83.66 0.94 1.15 16 23 C -0.22 -3.44 6.60 24.64 0.16 -3.28 16 24 C -0.08 -0.62 10.42 71.24 0.74 0.13 16 25 S 0.17 3.08 21.43 -56.49 -1.21 1.87 16 26 H 0.06 1.87 7.15 -2.39 -0.02 1.85 16 27 H 0.05 1.62 7.53 -2.39 -0.02 1.61 16 28 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 29 H 0.08 2.92 7.39 -2.39 -0.02 2.90 16 30 H 0.08 2.60 7.20 -2.39 -0.02 2.58 16 31 H 0.02 1.17 7.62 -2.39 -0.02 1.15 16 32 H 0.03 1.85 5.72 -2.39 -0.01 1.83 16 33 H 0.27 14.49 8.31 -92.71 -0.77 13.72 16 34 H 0.42 11.41 8.61 -96.74 -0.83 10.58 16 35 H 0.08 2.95 5.75 -2.39 -0.01 2.94 16 36 H 0.09 2.06 7.40 -2.39 -0.02 2.04 16 37 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 38 H 0.09 2.84 4.48 -2.39 -0.01 2.83 16 39 H 0.08 2.36 8.07 -2.38 -0.02 2.34 16 40 H 0.07 2.62 4.26 -2.39 -0.01 2.61 16 41 H 0.19 2.64 8.06 -2.91 -0.02 2.62 16 42 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 43 H 0.08 0.55 8.14 -2.38 -0.02 0.53 16 44 H 0.10 0.52 8.14 -2.39 -0.02 0.51 16 Total: -1.00 -69.72 367.25 -1.23 -70.95 By element: Atomic # 1 Polarization: 25.15 SS G_CDS: 0.20 Total: 25.35 kcal Atomic # 6 Polarization: -24.10 SS G_CDS: 5.53 Total: -18.57 kcal Atomic # 7 Polarization: -140.21 SS G_CDS: -3.56 Total: -143.78 kcal Atomic # 8 Polarization: -89.29 SS G_CDS: -3.90 Total: -93.19 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.02 kcal Atomic # 16 Polarization: 114.74 SS G_CDS: -1.53 Total: 113.21 kcal Total: -69.72 -1.23 -70.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336884689.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.856 kcal (2) G-P(sol) polarization free energy of solvation -69.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds