Wall clock time and date at job start Wed Apr 1 2020 03:59:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46493 * 109.46995 * 2 1 4 4 C 1.46504 * 120.00093 * 274.99605 * 3 2 1 5 5 C 1.50697 * 109.47154 * 278.45188 * 4 3 2 6 6 H 1.08002 * 120.00052 * 3.79820 * 5 4 3 7 7 C 1.37880 * 119.99821 * 183.78746 * 5 4 3 8 8 N 1.31518 * 120.00027 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99796 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46817 * 60.01096 * 9 7 5 11 11 H 1.48508 * 109.46890 * 180.02562 * 9 7 5 12 12 H 1.48491 * 109.47635 * 300.00684 * 9 7 5 13 13 S 1.65607 * 120.00112 * 95.00197 * 3 2 1 14 14 O 1.42097 * 106.39868 * 329.65359 * 13 3 2 15 15 O 1.42096 * 106.39906 * 196.73545 * 13 3 2 16 16 N 1.65592 * 107.21779 * 83.19555 * 13 3 2 17 17 C 1.46507 * 120.00385 * 66.97318 * 16 13 3 18 18 C 1.52996 * 109.47302 * 166.34924 * 17 16 13 19 19 H 1.08994 * 109.47399 * 305.00472 * 18 17 16 20 20 C 1.53005 * 109.47054 * 65.00465 * 18 17 16 21 21 C 1.50704 * 109.46824 * 185.00050 * 18 17 16 22 22 N 1.29028 * 124.91279 * 120.33473 * 21 18 17 23 23 C 1.31785 * 117.11892 * 180.22571 * 22 21 18 24 24 C 1.50696 * 122.74609 * 179.75350 * 23 22 21 25 25 C 1.33639 * 114.50286 * 359.48066 * 23 22 21 26 26 S 1.70975 * 124.91462 * 300.02253 * 21 18 17 27 27 H 1.09002 * 109.47272 * 60.00200 * 1 2 3 28 28 H 1.09002 * 109.46838 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47221 * 300.00024 * 1 2 3 30 30 H 1.08999 * 109.46829 * 239.99652 * 2 1 3 31 31 H 1.09003 * 109.46939 * 120.00231 * 2 1 3 32 32 H 1.09003 * 109.46716 * 38.45302 * 4 3 2 33 33 H 1.09004 * 109.46933 * 158.45176 * 4 3 2 34 34 H 0.96994 * 120.00037 * 179.97438 * 8 7 5 35 35 H 0.97004 * 120.00531 * 246.96878 * 16 13 3 36 36 H 1.09002 * 109.46584 * 46.34674 * 17 16 13 37 37 H 1.09001 * 109.46587 * 286.35133 * 17 16 13 38 38 H 1.08999 * 109.47292 * 59.99390 * 20 18 17 39 39 H 1.09000 * 109.47115 * 180.02562 * 20 18 17 40 40 H 1.09008 * 109.46651 * 299.99656 * 20 18 17 41 41 H 1.09004 * 109.47183 * 269.72905 * 24 23 22 42 42 H 1.09001 * 109.47459 * 29.73041 * 24 23 22 43 43 H 1.09002 * 109.47534 * 149.73894 * 24 23 22 44 44 H 1.07995 * 126.03619 * 180.27297 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1583 2.1086 -1.2639 5 6 3.4574 1.7240 -1.9237 6 1 4.0840 0.9642 -1.4803 7 6 3.8459 2.3418 -3.0935 8 7 3.0829 3.2672 -3.6333 9 14 5.4566 1.8655 -3.9110 10 1 5.4265 0.4225 -4.2604 11 1 5.6422 2.6702 -5.1452 12 1 6.5815 2.1254 -2.9772 13 16 2.4122 2.1202 1.4287 14 8 1.5695 1.5503 2.4208 15 8 2.4621 3.5144 1.1588 16 7 3.9575 1.6617 1.8080 17 6 5.0781 2.1020 0.9732 18 6 6.3946 1.8417 1.7080 19 1 6.3660 2.3223 2.6859 20 6 6.5901 0.3347 1.8858 21 6 7.5382 2.4053 0.9045 22 7 8.3568 3.3118 1.3203 23 6 9.3012 3.6968 0.4857 24 6 10.3204 4.7497 0.8376 25 6 9.2846 3.0731 -0.6961 26 16 7.9432 1.9305 -0.6873 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.3274 1.8558 -1.9226 33 1 2.1536 3.1810 -1.0684 34 1 3.3564 3.7020 -4.4560 35 1 4.1209 1.1016 2.5830 36 1 4.9811 3.1681 0.7678 37 1 5.0706 1.5488 0.0340 38 1 6.6186 -0.1459 0.9079 39 1 7.5278 0.1493 2.4097 40 1 5.7628 -0.0729 2.4670 41 1 9.9442 5.7308 0.5477 42 1 10.5034 4.7336 1.9120 43 1 11.2508 4.5464 0.3074 44 1 9.9719 3.2398 -1.5122 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336884987.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:59:41 Heat of formation + Delta-G solvation = -46.383892 kcal Electronic energy + Delta-G solvation = -27628.973620 eV Core-core repulsion = 23834.646117 eV Total energy + Delta-G solvation = -3794.327503 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.112 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.81818 -36.91230 -36.53516 -36.01146 -35.19680 -32.85760 -32.71830 -30.76653 -29.93162 -27.58612 -26.68632 -26.24429 -24.21204 -23.16486 -21.72015 -20.85885 -19.67863 -18.89149 -17.54892 -17.04868 -16.79651 -16.47653 -15.91027 -15.42741 -15.19620 -14.71918 -14.42144 -14.25236 -13.81184 -13.67103 -13.31508 -13.17026 -12.94644 -12.85111 -12.66586 -12.55942 -12.09192 -12.02339 -11.86329 -11.71432 -11.67280 -11.41894 -11.37055 -11.32080 -11.22968 -11.04508 -10.94424 -10.85302 -10.52616 -10.38589 -10.06809 -9.82458 -9.49182 -9.20423 -9.02021 -8.60273 -8.40452 -8.06829 -6.12493 -4.19837 0.80944 1.29106 1.52196 1.92317 2.85490 3.24763 3.29512 3.31295 3.49703 4.03562 4.18684 4.34517 4.77530 4.89909 5.02092 5.14552 5.16130 5.21263 5.26039 5.39694 5.43631 5.53265 5.59357 5.67362 5.75277 5.76540 5.81268 5.88546 5.95791 5.98598 6.11247 6.20899 6.29236 6.32948 6.38856 6.67119 6.70539 7.24627 7.36917 7.44010 7.67830 7.83668 7.85473 8.13859 8.83490 9.45996 10.95174 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.010592 B = 0.005048 C = 0.003902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2642.839273 B = 5545.587907 C = 7173.865824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.132 3.868 3 N -0.991 5.991 4 C 0.243 3.757 5 C -0.540 4.540 6 H 0.063 0.937 7 C 0.068 3.932 8 N -0.887 5.887 9 Si 0.874 3.126 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.250 1.250 13 S 2.785 3.215 14 O -0.999 6.999 15 O -0.976 6.976 16 N -1.129 6.129 17 C 0.124 3.876 18 C -0.024 4.024 19 H 0.105 0.895 20 C -0.147 4.147 21 C 0.054 3.946 22 N -0.475 5.475 23 C 0.063 3.937 24 C -0.076 4.076 25 C -0.278 4.278 26 S 0.163 5.837 27 H 0.060 0.940 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.080 0.920 31 H 0.059 0.941 32 H 0.035 0.965 33 H 0.055 0.945 34 H 0.265 0.735 35 H 0.406 0.594 36 H 0.084 0.916 37 H 0.092 0.908 38 H 0.064 0.936 39 H 0.061 0.939 40 H 0.071 0.929 41 H 0.074 0.926 42 H 0.073 0.927 43 H 0.071 0.929 44 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.827 -5.523 7.541 13.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.006 3.994 3 N -0.833 5.833 4 C 0.121 3.879 5 C -0.580 4.580 6 H 0.081 0.919 7 C -0.135 4.135 8 N -0.525 5.525 9 Si 0.702 3.298 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.176 1.176 13 S 2.793 3.207 14 O -0.983 6.983 15 O -0.960 6.960 16 N -0.887 5.887 17 C -0.003 4.003 18 C -0.047 4.047 19 H 0.123 0.877 20 C -0.205 4.205 21 C -0.224 4.224 22 N -0.190 5.190 23 C -0.070 4.070 24 C -0.135 4.135 25 C -0.417 4.417 26 S 0.419 5.581 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.098 0.902 31 H 0.078 0.922 32 H 0.053 0.947 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.239 0.761 36 H 0.102 0.898 37 H 0.110 0.890 38 H 0.083 0.917 39 H 0.080 0.920 40 H 0.090 0.910 41 H 0.093 0.907 42 H 0.092 0.908 43 H 0.090 0.910 44 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 8.731 -5.188 7.507 12.629 hybrid contribution 1.831 -0.005 -0.519 1.903 sum 10.562 -5.193 6.987 13.687 Atomic orbital electron populations 1.22216 0.96958 1.01317 1.02526 1.20948 0.93672 0.82871 1.01957 1.57737 1.78528 1.22956 1.24107 1.19219 0.97246 0.92547 0.78873 1.21459 1.05787 1.22207 1.08509 0.91899 1.24925 0.97016 0.94667 0.96922 1.69920 1.37482 1.25042 1.20037 0.86951 0.84895 0.78526 0.79474 1.20279 1.21467 1.17573 1.01767 0.72525 0.73743 0.72696 1.93553 1.64940 1.80061 1.59754 1.93584 1.86419 1.30876 1.85105 1.56008 1.24869 1.68352 1.39520 1.21488 0.83259 1.01944 0.93635 1.20020 0.89241 0.96628 0.98821 0.87706 1.21939 1.02400 0.93246 1.02922 1.26853 1.00406 0.98375 0.96763 1.66116 1.04677 1.13006 1.35213 1.20225 0.96944 1.00060 0.89795 1.20317 0.95048 0.95491 1.02660 1.26884 1.05631 1.05775 1.03422 1.84594 1.22771 1.37721 1.13007 0.92100 0.92468 0.92453 0.90167 0.92211 0.94716 0.92735 0.92568 0.76075 0.89808 0.88979 0.91688 0.92025 0.90987 0.90725 0.90788 0.91020 0.80999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.64 10.24 37.16 0.38 -2.26 16 2 C 0.13 2.19 6.04 -4.05 -0.02 2.16 16 3 N -0.99 -19.57 2.83 -115.66 -0.33 -19.90 16 4 C 0.24 5.80 5.44 -5.19 -0.03 5.77 16 5 C -0.54 -13.21 8.57 -34.44 -0.30 -13.50 16 6 H 0.06 1.44 6.34 -52.49 -0.33 1.11 16 7 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 8 N -0.89 -24.70 13.29 55.43 0.74 -23.96 16 9 Si 0.87 19.07 29.54 -169.99 -5.02 14.05 16 10 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 11 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 12 H -0.25 -4.93 5.59 56.52 0.32 -4.61 16 13 S 2.78 53.88 6.08 -107.50 -0.65 53.23 16 14 O -1.00 -19.84 17.17 -57.17 -0.98 -20.82 16 15 O -0.98 -22.73 15.97 -57.17 -0.91 -23.65 16 16 N -1.13 -17.48 5.93 -10.61 -0.06 -17.54 16 17 C 0.12 2.04 5.46 -4.04 -0.02 2.02 16 18 C -0.02 -0.33 2.91 -91.77 -0.27 -0.59 16 19 H 0.10 1.37 8.14 -51.93 -0.42 0.94 16 20 C -0.15 -1.60 8.96 37.16 0.33 -1.27 16 21 C 0.05 0.83 6.03 -13.45 -0.08 0.75 16 22 N -0.48 -7.54 10.53 -8.06 -0.08 -7.62 16 23 C 0.06 0.88 6.74 -84.23 -0.57 0.32 16 24 C -0.08 -0.78 10.31 36.00 0.37 -0.41 16 25 C -0.28 -3.77 11.13 29.12 0.32 -3.45 16 26 S 0.16 2.46 21.23 -107.50 -2.28 0.18 16 27 H 0.06 0.98 8.12 -51.93 -0.42 0.56 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.06 0.93 7.95 -51.93 -0.41 0.51 16 30 H 0.08 1.32 8.11 -51.93 -0.42 0.90 16 31 H 0.06 0.86 7.80 -51.93 -0.40 0.45 16 32 H 0.03 0.87 8.10 -51.93 -0.42 0.45 16 33 H 0.05 1.46 6.80 -51.93 -0.35 1.11 16 34 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 35 H 0.41 4.95 7.43 -34.47 -0.26 4.70 16 36 H 0.08 1.59 7.74 -51.93 -0.40 1.19 16 37 H 0.09 1.62 5.68 -51.93 -0.30 1.33 16 38 H 0.06 0.73 7.93 -51.93 -0.41 0.31 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.07 0.67 6.92 -51.92 -0.36 0.31 16 41 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.07 0.58 8.12 -51.93 -0.42 0.15 16 44 H 0.17 1.86 8.06 -52.49 -0.42 1.43 16 LS Contribution 383.79 15.07 5.78 5.78 Total: -1.00 -31.69 383.79 -10.45 -42.14 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: -6.67 Total: 6.91 kcal Atomic # 6 Polarization: -8.82 SS G_CDS: 0.03 Total: -8.80 kcal Atomic # 7 Polarization: -69.29 SS G_CDS: 0.26 Total: -69.03 kcal Atomic # 8 Polarization: -42.57 SS G_CDS: -1.90 Total: -44.47 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -5.02 Total: 14.05 kcal Atomic # 16 Polarization: 56.34 SS G_CDS: -2.94 Total: 53.40 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -31.69 -10.45 -42.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336884987.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.243 kcal (2) G-P(sol) polarization free energy of solvation -31.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds