Wall clock time and date at job start Wed Apr 1 2020 03:59:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46493 * 109.46995 * 2 1 4 4 C 1.46504 * 120.00093 * 274.99605 * 3 2 1 5 5 C 1.50697 * 109.47154 * 278.45188 * 4 3 2 6 6 H 1.08002 * 120.00052 * 3.79820 * 5 4 3 7 7 C 1.37880 * 119.99821 * 183.78746 * 5 4 3 8 8 N 1.31518 * 120.00027 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99796 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46817 * 60.01096 * 9 7 5 11 11 H 1.48508 * 109.46890 * 180.02562 * 9 7 5 12 12 H 1.48491 * 109.47635 * 300.00684 * 9 7 5 13 13 S 1.65607 * 120.00112 * 95.00197 * 3 2 1 14 14 O 1.42097 * 106.39868 * 329.65359 * 13 3 2 15 15 O 1.42096 * 106.39906 * 196.73545 * 13 3 2 16 16 N 1.65592 * 107.21779 * 83.19555 * 13 3 2 17 17 C 1.46507 * 120.00385 * 66.97318 * 16 13 3 18 18 C 1.52996 * 109.47302 * 166.34924 * 17 16 13 19 19 H 1.08994 * 109.47399 * 305.00472 * 18 17 16 20 20 C 1.53005 * 109.47054 * 65.00465 * 18 17 16 21 21 C 1.50704 * 109.46824 * 185.00050 * 18 17 16 22 22 N 1.29028 * 124.91279 * 120.33473 * 21 18 17 23 23 C 1.31785 * 117.11892 * 180.22571 * 22 21 18 24 24 C 1.50696 * 122.74609 * 179.75350 * 23 22 21 25 25 C 1.33639 * 114.50286 * 359.48066 * 23 22 21 26 26 S 1.70975 * 124.91462 * 300.02253 * 21 18 17 27 27 H 1.09002 * 109.47272 * 60.00200 * 1 2 3 28 28 H 1.09002 * 109.46838 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47221 * 300.00024 * 1 2 3 30 30 H 1.08999 * 109.46829 * 239.99652 * 2 1 3 31 31 H 1.09003 * 109.46939 * 120.00231 * 2 1 3 32 32 H 1.09003 * 109.46716 * 38.45302 * 4 3 2 33 33 H 1.09004 * 109.46933 * 158.45176 * 4 3 2 34 34 H 0.96994 * 120.00037 * 179.97438 * 8 7 5 35 35 H 0.97004 * 120.00531 * 246.96878 * 16 13 3 36 36 H 1.09002 * 109.46584 * 46.34674 * 17 16 13 37 37 H 1.09001 * 109.46587 * 286.35133 * 17 16 13 38 38 H 1.08999 * 109.47292 * 59.99390 * 20 18 17 39 39 H 1.09000 * 109.47115 * 180.02562 * 20 18 17 40 40 H 1.09008 * 109.46651 * 299.99656 * 20 18 17 41 41 H 1.09004 * 109.47183 * 269.72905 * 24 23 22 42 42 H 1.09001 * 109.47459 * 29.73041 * 24 23 22 43 43 H 1.09002 * 109.47534 * 149.73894 * 24 23 22 44 44 H 1.07995 * 126.03619 * 180.27297 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1583 2.1086 -1.2639 5 6 3.4574 1.7240 -1.9237 6 1 4.0840 0.9642 -1.4803 7 6 3.8459 2.3418 -3.0935 8 7 3.0829 3.2672 -3.6333 9 14 5.4566 1.8655 -3.9110 10 1 5.4265 0.4225 -4.2604 11 1 5.6422 2.6702 -5.1452 12 1 6.5815 2.1254 -2.9772 13 16 2.4122 2.1202 1.4287 14 8 1.5695 1.5503 2.4208 15 8 2.4621 3.5144 1.1588 16 7 3.9575 1.6617 1.8080 17 6 5.0781 2.1020 0.9732 18 6 6.3946 1.8417 1.7080 19 1 6.3660 2.3223 2.6859 20 6 6.5901 0.3347 1.8858 21 6 7.5382 2.4053 0.9045 22 7 8.3568 3.3118 1.3203 23 6 9.3012 3.6968 0.4857 24 6 10.3204 4.7497 0.8376 25 6 9.2846 3.0731 -0.6961 26 16 7.9432 1.9305 -0.6873 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.3274 1.8558 -1.9226 33 1 2.1536 3.1810 -1.0684 34 1 3.3564 3.7020 -4.4560 35 1 4.1209 1.1016 2.5830 36 1 4.9811 3.1681 0.7678 37 1 5.0706 1.5488 0.0340 38 1 6.6186 -0.1459 0.9079 39 1 7.5278 0.1493 2.4097 40 1 5.7628 -0.0729 2.4670 41 1 9.9442 5.7308 0.5477 42 1 10.5034 4.7336 1.9120 43 1 11.2508 4.5464 0.3074 44 1 9.9719 3.2398 -1.5122 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336884987.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:59:40 Heat of formation + Delta-G solvation = -69.111462 kcal Electronic energy + Delta-G solvation = -27629.959162 eV Core-core repulsion = 23834.646117 eV Total energy + Delta-G solvation = -3795.313045 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.112 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.90734 -38.38782 -37.95068 -37.59968 -36.88571 -34.62896 -34.03295 -31.77609 -31.47858 -28.53150 -28.47584 -27.36830 -25.38183 -24.90671 -23.25521 -21.98144 -20.79827 -20.36890 -18.91727 -18.56059 -18.37790 -18.14136 -17.37271 -16.86070 -16.44896 -16.15782 -15.84146 -15.44373 -15.27792 -14.82758 -14.67387 -14.55010 -14.37159 -13.90846 -13.76555 -13.63402 -13.56218 -13.40912 -13.31356 -13.19865 -13.04399 -12.97998 -12.79835 -12.71462 -12.64040 -12.45110 -12.23470 -12.17167 -12.01784 -11.98593 -11.71379 -11.52602 -10.67892 -10.56649 -10.44170 -10.22144 -9.76867 -9.59083 -8.10264 -6.23965 -0.36054 -0.21899 0.41450 0.82614 1.49901 1.54730 1.58133 1.76262 2.00670 2.49714 2.60504 3.01675 3.22761 3.46403 3.67222 3.90793 3.98550 4.02171 4.25042 4.32406 4.38347 4.41862 4.48619 4.57262 4.71241 4.76435 4.77133 4.80316 4.83452 4.92217 4.97106 5.03082 5.11585 5.19973 5.26588 5.33224 5.36872 5.45875 5.57005 5.82133 5.94138 6.16457 6.22693 6.75887 6.87503 7.46540 8.97421 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.010592 B = 0.005048 C = 0.003902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2642.839273 B = 5545.587907 C = 7173.865824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.122 3.878 3 N -0.994 5.994 4 C 0.258 3.742 5 C -0.534 4.534 6 H 0.081 0.919 7 C 0.014 3.986 8 N -0.932 5.932 9 Si 0.931 3.069 10 H -0.268 1.268 11 H -0.301 1.301 12 H -0.222 1.222 13 S 2.798 3.202 14 O -1.001 7.001 15 O -1.020 7.020 16 N -1.109 6.109 17 C 0.129 3.871 18 C -0.018 4.018 19 H 0.111 0.889 20 C -0.143 4.143 21 C 0.045 3.955 22 N -0.495 5.495 23 C 0.046 3.954 24 C -0.074 4.074 25 C -0.272 4.272 26 S 0.132 5.868 27 H 0.045 0.955 28 H 0.090 0.910 29 H 0.047 0.953 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.017 0.983 33 H 0.017 0.983 34 H 0.261 0.739 35 H 0.425 0.575 36 H 0.051 0.949 37 H 0.083 0.917 38 H 0.063 0.937 39 H 0.074 0.926 40 H 0.091 0.909 41 H 0.078 0.922 42 H 0.075 0.925 43 H 0.097 0.903 44 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.960 -7.479 8.517 16.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.003 4.003 3 N -0.836 5.836 4 C 0.134 3.866 5 C -0.572 4.572 6 H 0.098 0.902 7 C -0.185 4.185 8 N -0.572 5.572 9 Si 0.755 3.245 10 H -0.193 1.193 11 H -0.228 1.228 12 H -0.146 1.146 13 S 2.806 3.194 14 O -0.985 6.985 15 O -1.003 7.003 16 N -0.872 5.872 17 C 0.002 3.998 18 C -0.042 4.042 19 H 0.129 0.871 20 C -0.202 4.202 21 C -0.233 4.233 22 N -0.211 5.211 23 C -0.086 4.086 24 C -0.133 4.133 25 C -0.410 4.410 26 S 0.388 5.612 27 H 0.064 0.936 28 H 0.109 0.891 29 H 0.066 0.934 30 H 0.101 0.899 31 H 0.107 0.893 32 H 0.035 0.965 33 H 0.035 0.965 34 H 0.070 0.930 35 H 0.262 0.738 36 H 0.069 0.931 37 H 0.101 0.899 38 H 0.082 0.918 39 H 0.093 0.907 40 H 0.110 0.890 41 H 0.097 0.903 42 H 0.094 0.906 43 H 0.116 0.884 44 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 10.867 -7.181 8.535 15.572 hybrid contribution 1.142 0.613 -0.749 1.497 sum 12.008 -6.568 7.786 15.747 Atomic orbital electron populations 1.22208 0.96207 1.03154 1.01284 1.21267 0.94445 0.81089 1.03536 1.57615 1.79217 1.24203 1.22532 1.18752 0.96724 0.90908 0.80175 1.21765 1.05731 1.21733 1.08019 0.90153 1.25779 1.00344 0.94597 0.97803 1.70083 1.39663 1.26858 1.20598 0.86040 0.81837 0.78216 0.78360 1.19349 1.22801 1.14608 1.01167 0.73094 0.72754 0.72345 1.93542 1.65600 1.79800 1.59558 1.93534 1.87218 1.33927 1.85668 1.55534 1.23266 1.68368 1.40056 1.21346 0.84820 0.99759 0.93911 1.20022 0.87090 0.98786 0.98263 0.87054 1.21959 1.03964 0.90802 1.03433 1.27073 1.00821 0.98485 0.96903 1.66162 1.05437 1.13242 1.36226 1.20819 0.97214 1.00752 0.89831 1.20433 0.95157 0.94496 1.03206 1.27215 1.05147 1.04631 1.04051 1.84534 1.24204 1.38860 1.13616 0.93625 0.89105 0.93402 0.89869 0.89251 0.96520 0.96525 0.92993 0.73762 0.93060 0.89930 0.91814 0.90691 0.89036 0.90345 0.90607 0.88400 0.78256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.01 10.24 71.98 0.74 -4.28 16 2 C 0.12 3.83 6.04 86.38 0.52 4.36 16 3 N -0.99 -39.22 2.83 -519.85 -1.47 -40.69 16 4 C 0.26 12.70 5.44 85.63 0.47 13.17 16 5 C -0.53 -26.25 8.57 25.60 0.22 -26.03 16 6 H 0.08 3.60 6.34 -2.91 -0.02 3.58 16 7 C 0.01 0.73 5.46 84.65 0.46 1.19 16 8 N -0.93 -53.64 13.29 21.45 0.28 -53.36 16 9 Si 0.93 39.03 29.54 68.60 2.03 41.05 16 10 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 11 H -0.30 -13.24 7.11 99.48 0.71 -12.53 16 12 H -0.22 -8.18 5.59 99.48 0.56 -7.63 16 13 S 2.80 107.80 6.08 -56.49 -0.34 107.45 16 14 O -1.00 -38.49 17.17 -128.00 -2.20 -40.68 16 15 O -1.02 -49.05 15.97 -128.00 -2.04 -51.09 16 16 N -1.11 -32.92 5.93 -187.48 -1.11 -34.03 16 17 C 0.13 4.18 5.46 86.38 0.47 4.65 16 18 C -0.02 -0.47 2.91 -11.54 -0.03 -0.50 16 19 H 0.11 2.72 8.14 -2.39 -0.02 2.70 16 20 C -0.14 -2.73 8.96 71.98 0.65 -2.09 16 21 C 0.05 1.33 6.03 88.52 0.53 1.86 16 22 N -0.50 -15.08 10.53 -179.40 -1.89 -16.97 16 23 C 0.05 1.20 6.74 41.52 0.28 1.48 16 24 C -0.07 -1.35 10.31 71.23 0.73 -0.61 16 25 C -0.27 -6.74 11.13 66.78 0.74 -6.00 16 26 S 0.13 3.77 21.23 -56.49 -1.20 2.57 16 27 H 0.04 1.46 8.12 -2.39 -0.02 1.45 16 28 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 29 H 0.05 1.49 7.95 -2.39 -0.02 1.47 16 30 H 0.08 2.58 8.11 -2.39 -0.02 2.57 16 31 H 0.09 2.29 7.80 -2.39 -0.02 2.27 16 32 H 0.02 0.87 8.10 -2.39 -0.02 0.85 16 33 H 0.02 0.95 6.80 -2.39 -0.02 0.93 16 34 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 35 H 0.43 9.28 7.43 -96.74 -0.72 8.56 16 36 H 0.05 2.00 7.74 -2.39 -0.02 1.98 16 37 H 0.08 2.84 5.68 -2.39 -0.01 2.83 16 38 H 0.06 1.25 7.93 -2.39 -0.02 1.23 16 39 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.09 1.36 6.92 -2.38 -0.02 1.34 16 41 H 0.08 1.38 8.14 -2.38 -0.02 1.36 16 42 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 43 H 0.10 1.25 8.12 -2.39 -0.02 1.23 16 44 H 0.20 3.65 8.06 -2.91 -0.02 3.63 16 Total: -1.00 -70.56 383.79 -2.03 -72.58 By element: Atomic # 1 Polarization: 25.82 SS G_CDS: 0.14 Total: 25.96 kcal Atomic # 6 Polarization: -18.58 SS G_CDS: 5.78 Total: -12.80 kcal Atomic # 7 Polarization: -140.86 SS G_CDS: -4.19 Total: -145.05 kcal Atomic # 8 Polarization: -87.53 SS G_CDS: -4.24 Total: -91.77 kcal Atomic # 14 Polarization: 39.03 SS G_CDS: 2.03 Total: 41.05 kcal Atomic # 16 Polarization: 111.57 SS G_CDS: -1.54 Total: 110.02 kcal Total: -70.56 -2.03 -72.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336884987.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.471 kcal (2) G-P(sol) polarization free energy of solvation -70.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds