Wall clock time and date at job start Wed Apr 1 2020 04:29:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42896 * 114.00347 * 2 1 4 4 C 1.52999 * 109.47395 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.46867 * 65.00121 * 4 3 2 6 6 C 1.46508 * 119.99756 * 274.99665 * 5 4 3 7 7 C 1.50702 * 109.47368 * 279.99321 * 6 5 4 8 8 H 1.07999 * 120.00029 * 4.26347 * 7 6 5 9 9 C 1.37873 * 119.99746 * 184.26206 * 7 6 5 10 10 N 1.31515 * 120.00472 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 119.99657 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.47616 * 59.99793 * 11 9 7 13 13 H 1.48499 * 109.46812 * 180.02562 * 11 9 7 14 14 H 1.48506 * 109.46954 * 299.99365 * 11 9 7 15 15 S 1.65594 * 120.00046 * 95.00032 * 5 4 3 16 16 O 1.42096 * 106.40317 * 330.09012 * 15 5 4 17 17 O 1.42098 * 106.40425 * 197.16354 * 15 5 4 18 18 N 1.65603 * 107.21837 * 83.62964 * 15 5 4 19 19 C 1.46502 * 120.00308 * 65.21551 * 18 15 5 20 20 C 1.50695 * 109.47283 * 165.47056 * 19 18 15 21 21 C 1.38233 * 119.59587 * 95.00159 * 20 19 18 22 22 C 1.38588 * 119.19102 * 180.02562 * 21 20 19 23 23 C 1.38878 * 118.40090 * 0.24902 * 22 21 20 24 24 F 1.35099 * 120.44516 * 179.75205 * 23 22 21 25 25 C 1.38424 * 119.11163 * 359.52140 * 23 22 21 26 26 N 1.31854 * 119.58600 * 275.01719 * 20 19 18 27 27 H 1.09004 * 109.47157 * 299.99842 * 1 2 3 28 28 H 1.09001 * 109.47306 * 59.99878 * 1 2 3 29 29 H 1.08999 * 109.47458 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47096 * 60.00143 * 3 2 1 31 31 H 1.09000 * 109.46747 * 300.00142 * 3 2 1 32 32 H 1.09001 * 109.47222 * 304.99969 * 4 3 2 33 33 H 1.08997 * 109.47496 * 184.99706 * 4 3 2 34 34 H 1.09003 * 109.46975 * 39.99899 * 6 5 4 35 35 H 1.08997 * 109.46589 * 159.99416 * 6 5 4 36 36 H 0.96998 * 120.00551 * 179.97438 * 10 9 7 37 37 H 0.97000 * 119.99980 * 245.21776 * 18 15 5 38 38 H 1.09004 * 109.47205 * 45.46368 * 19 18 15 39 39 H 1.08998 * 109.46965 * 285.46859 * 19 18 15 40 40 H 1.08004 * 120.40060 * 0.02562 * 21 20 19 41 41 H 1.07998 * 120.79613 * 179.97438 * 22 21 20 42 42 H 1.07997 * 119.63983 * 180.20558 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9766 0.5639 -1.2509 6 6 4.0014 -0.8957 -1.3758 7 6 5.2434 -1.4354 -0.7144 8 1 5.9089 -0.7671 -0.1883 9 6 5.5298 -2.7824 -0.7810 10 7 4.7196 -3.5962 -1.4221 11 14 7.0689 -3.4516 0.0394 12 1 7.0168 -3.1675 1.4960 13 1 7.1470 -4.9187 -0.1768 14 1 8.2666 -2.8006 -0.5495 15 16 4.4473 1.5120 -2.5244 16 8 3.7048 2.7192 -2.4219 17 8 4.4220 0.6792 -3.6755 18 7 6.0338 1.9161 -2.2746 19 6 7.0656 0.8762 -2.2888 20 6 8.4246 1.5184 -2.3970 21 6 9.1551 1.7678 -1.2503 22 6 10.4037 2.3593 -1.3596 23 6 10.8719 2.6847 -2.6259 24 9 12.0811 3.2672 -2.7798 25 6 10.0851 2.4000 -3.7286 26 7 8.9019 1.8358 -3.5845 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.6887 1.8463 0.8899 31 1 1.6886 1.8463 -0.8900 32 1 3.8508 0.5684 0.8427 33 1 3.9785 2.1764 0.0902 34 1 3.1199 -1.3167 -0.8922 35 1 4.0031 -1.1700 -2.4307 36 1 4.9214 -4.5438 -1.4693 37 1 6.2798 2.8413 -2.1189 38 1 6.9059 0.2175 -3.1425 39 1 7.0100 0.2966 -1.3674 40 1 8.7576 1.5050 -0.2811 41 1 10.9963 2.5662 -0.4807 42 1 10.4423 2.6464 -4.7175 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336901078.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:17 Heat of formation + Delta-G solvation = -125.110031 kcal Electronic energy + Delta-G solvation = -29253.276211 eV Core-core repulsion = 24889.321710 eV Total energy + Delta-G solvation = -4363.954501 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.115 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.17710 -40.29133 -37.71281 -36.64802 -35.40288 -35.18517 -35.05143 -32.66792 -32.56767 -30.91241 -29.47113 -26.78179 -25.99018 -25.64056 -24.05791 -22.83864 -22.22400 -21.74192 -18.93079 -17.87361 -17.46134 -17.40230 -17.08179 -16.58331 -16.17975 -15.96752 -15.87328 -15.63937 -15.25028 -14.82850 -14.46414 -14.37046 -14.18976 -14.07093 -13.56645 -13.47772 -13.04668 -12.88255 -12.65560 -12.31774 -12.19306 -12.01411 -11.87861 -11.63917 -11.45896 -11.34006 -11.19184 -11.07350 -10.88374 -10.62757 -10.38572 -10.12769 -10.06288 -9.80114 -9.69978 -9.27101 -9.12059 -9.04766 -8.44167 -8.00969 -6.06255 -4.12560 0.64342 0.91774 1.30816 3.25057 3.29451 3.32721 3.33109 3.66484 3.81138 4.12337 4.19369 4.20250 4.37183 4.45334 4.54613 4.69598 5.08951 5.21688 5.27285 5.35443 5.45165 5.47717 5.55487 5.61911 5.66944 5.68051 5.71984 5.80639 5.86446 5.96120 6.03653 6.21544 6.34151 6.44724 6.58800 7.22721 7.49558 7.56545 7.58774 7.72125 7.79237 7.92816 8.22611 8.90674 9.51556 11.01649 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.010307 B = 0.004120 C = 0.003276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2715.947884 B = 6795.256880 C = 8545.772710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.368 6.368 3 C 0.042 3.958 4 C 0.137 3.863 5 N -0.984 5.984 6 C 0.242 3.758 7 C -0.540 4.540 8 H 0.061 0.939 9 C 0.067 3.933 10 N -0.884 5.884 11 Si 0.887 3.113 12 H -0.277 1.277 13 H -0.287 1.287 14 H -0.276 1.276 15 S 2.783 3.217 16 O -1.001 7.001 17 O -0.972 6.972 18 N -1.125 6.125 19 C 0.169 3.831 20 C 0.118 3.882 21 C -0.126 4.126 22 C -0.110 4.110 23 C 0.042 3.958 24 F -0.133 7.133 25 C 0.075 3.925 26 N -0.441 5.441 27 H 0.033 0.967 28 H 0.035 0.965 29 H 0.083 0.917 30 H 0.049 0.951 31 H 0.051 0.949 32 H 0.091 0.909 33 H 0.076 0.924 34 H 0.054 0.946 35 H 0.052 0.948 36 H 0.264 0.736 37 H 0.406 0.594 38 H 0.101 0.899 39 H 0.106 0.894 40 H 0.152 0.848 41 H 0.148 0.852 42 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.192 12.178 3.333 13.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.287 6.287 3 C -0.037 4.037 4 C 0.010 3.990 5 N -0.826 5.826 6 C 0.120 3.880 7 C -0.579 4.579 8 H 0.079 0.921 9 C -0.136 4.136 10 N -0.522 5.522 11 Si 0.714 3.286 12 H -0.203 1.203 13 H -0.213 1.213 14 H -0.201 1.201 15 S 2.791 3.209 16 O -0.985 6.985 17 O -0.955 6.955 18 N -0.883 5.883 19 C 0.043 3.957 20 C -0.021 4.021 21 C -0.146 4.146 22 C -0.137 4.137 23 C 0.020 3.980 24 F -0.112 7.112 25 C -0.084 4.084 26 N -0.149 5.149 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.101 0.899 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.110 0.890 33 H 0.094 0.906 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.074 0.926 37 H 0.238 0.762 38 H 0.119 0.881 39 H 0.124 0.876 40 H 0.169 0.831 41 H 0.165 0.835 42 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 4.200 11.670 1.732 12.523 hybrid contribution 1.878 0.340 1.636 2.514 sum 6.078 12.010 3.368 13.875 Atomic orbital electron populations 1.22700 0.82413 1.02419 0.99095 1.88101 1.18386 1.27025 1.95150 1.23113 0.95410 0.85215 0.99925 1.21053 0.91376 0.97483 0.89102 1.57679 1.78370 1.19441 1.27078 1.19342 0.98220 0.71298 0.99102 1.21473 1.08311 0.92963 1.35180 0.92120 1.24916 0.96552 0.96956 0.95216 1.69921 1.36705 1.04275 1.41260 0.86758 0.83622 0.78267 0.79920 1.20261 1.21253 1.20133 1.01862 0.72480 0.72412 0.74143 1.93545 1.69512 1.47713 1.87764 1.93592 1.86081 1.68520 1.47294 1.56016 1.25606 1.15779 1.90904 1.20305 0.80772 0.88716 1.05922 1.21556 0.97033 0.95536 0.87991 1.22075 0.93800 0.97844 1.00898 1.21673 0.96892 0.98425 0.96706 1.18872 0.83232 1.00132 0.95759 1.91513 1.41490 1.81741 1.96438 1.22962 0.90229 0.96733 0.98498 1.67655 1.11702 1.08861 1.26684 0.94834 0.94617 0.89870 0.93297 0.93059 0.89021 0.90557 0.92758 0.92963 0.92588 0.76225 0.88103 0.87598 0.83068 0.83452 0.81565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.01 101.05 1.11 1.54 16 2 O -0.37 -6.61 8.99 -35.23 -0.32 -6.93 16 3 C 0.04 0.66 6.28 37.16 0.23 0.90 16 4 C 0.14 2.23 5.75 -4.04 -0.02 2.21 16 5 N -0.98 -19.27 2.83 -115.65 -0.33 -19.60 16 6 C 0.24 5.81 5.32 -5.19 -0.03 5.79 16 7 C -0.54 -13.21 8.51 -34.44 -0.29 -13.50 16 8 H 0.06 1.36 6.45 -52.49 -0.34 1.03 16 9 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 10 N -0.88 -24.78 13.29 55.43 0.74 -24.04 16 11 Si 0.89 19.76 29.54 -169.99 -5.02 14.74 16 12 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 13 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 14 H -0.28 -5.94 7.11 56.52 0.40 -5.53 16 15 S 2.78 53.36 6.07 -107.50 -0.65 52.71 16 16 O -1.00 -19.58 17.17 -57.17 -0.98 -20.56 16 17 O -0.97 -22.56 16.01 -57.17 -0.92 -23.47 16 18 N -1.13 -17.53 6.05 -11.66 -0.07 -17.60 16 19 C 0.17 2.74 6.51 -5.19 -0.03 2.71 16 20 C 0.12 1.66 6.17 -82.59 -0.51 1.15 16 21 C -0.13 -1.42 9.72 -39.45 -0.38 -1.81 16 22 C -0.11 -1.11 10.16 -39.22 -0.40 -1.51 16 23 C 0.04 0.46 7.35 -39.28 -0.29 0.17 16 24 F -0.13 -1.44 17.28 2.25 0.04 -1.40 16 25 C 0.08 0.89 11.17 -17.47 -0.20 0.69 16 26 N -0.44 -6.40 10.27 -9.42 -0.10 -6.49 16 27 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.05 0.84 7.97 -51.93 -0.41 0.42 16 32 H 0.09 1.51 8.09 -51.93 -0.42 1.09 16 33 H 0.08 1.01 7.78 -51.93 -0.40 0.61 16 34 H 0.05 1.41 6.56 -51.93 -0.34 1.07 16 35 H 0.05 1.42 6.77 -51.93 -0.35 1.06 16 36 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 37 H 0.41 5.26 8.64 -34.47 -0.30 4.96 16 38 H 0.10 1.88 7.76 -51.93 -0.40 1.48 16 39 H 0.11 1.74 5.75 -51.93 -0.30 1.44 16 40 H 0.15 1.42 8.06 -52.48 -0.42 1.00 16 41 H 0.15 1.09 8.06 -52.49 -0.42 0.67 16 42 H 0.17 1.53 8.06 -52.49 -0.42 1.11 16 LS Contribution 373.07 15.07 5.62 5.62 Total: -1.00 -32.61 373.07 -8.25 -40.86 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: -5.36 Total: 6.19 kcal Atomic # 6 Polarization: 0.88 SS G_CDS: -0.90 Total: -0.02 kcal Atomic # 7 Polarization: -67.98 SS G_CDS: 0.24 Total: -67.73 kcal Atomic # 8 Polarization: -48.75 SS G_CDS: -2.21 Total: -50.97 kcal Atomic # 9 Polarization: -1.44 SS G_CDS: 0.04 Total: -1.40 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -5.02 Total: 14.74 kcal Atomic # 16 Polarization: 53.36 SS G_CDS: -0.65 Total: 52.71 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.61 -8.25 -40.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336901078.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.248 kcal (2) G-P(sol) polarization free energy of solvation -32.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds