Wall clock time and date at job start Wed Apr 1 2020 04:29:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42896 * 114.00347 * 2 1 4 4 C 1.52999 * 109.47395 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.46867 * 65.00121 * 4 3 2 6 6 C 1.46508 * 119.99756 * 274.99665 * 5 4 3 7 7 C 1.50702 * 109.47368 * 279.99321 * 6 5 4 8 8 H 1.07999 * 120.00029 * 4.26347 * 7 6 5 9 9 C 1.37873 * 119.99746 * 184.26206 * 7 6 5 10 10 N 1.31515 * 120.00472 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 119.99657 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.47616 * 59.99793 * 11 9 7 13 13 H 1.48499 * 109.46812 * 180.02562 * 11 9 7 14 14 H 1.48506 * 109.46954 * 299.99365 * 11 9 7 15 15 S 1.65594 * 120.00046 * 95.00032 * 5 4 3 16 16 O 1.42096 * 106.40317 * 330.09012 * 15 5 4 17 17 O 1.42098 * 106.40425 * 197.16354 * 15 5 4 18 18 N 1.65603 * 107.21837 * 83.62964 * 15 5 4 19 19 C 1.46502 * 120.00308 * 65.21551 * 18 15 5 20 20 C 1.50695 * 109.47283 * 165.47056 * 19 18 15 21 21 C 1.38233 * 119.59587 * 95.00159 * 20 19 18 22 22 C 1.38588 * 119.19102 * 180.02562 * 21 20 19 23 23 C 1.38878 * 118.40090 * 0.24902 * 22 21 20 24 24 F 1.35099 * 120.44516 * 179.75205 * 23 22 21 25 25 C 1.38424 * 119.11163 * 359.52140 * 23 22 21 26 26 N 1.31854 * 119.58600 * 275.01719 * 20 19 18 27 27 H 1.09004 * 109.47157 * 299.99842 * 1 2 3 28 28 H 1.09001 * 109.47306 * 59.99878 * 1 2 3 29 29 H 1.08999 * 109.47458 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47096 * 60.00143 * 3 2 1 31 31 H 1.09000 * 109.46747 * 300.00142 * 3 2 1 32 32 H 1.09001 * 109.47222 * 304.99969 * 4 3 2 33 33 H 1.08997 * 109.47496 * 184.99706 * 4 3 2 34 34 H 1.09003 * 109.46975 * 39.99899 * 6 5 4 35 35 H 1.08997 * 109.46589 * 159.99416 * 6 5 4 36 36 H 0.96998 * 120.00551 * 179.97438 * 10 9 7 37 37 H 0.97000 * 119.99980 * 245.21776 * 18 15 5 38 38 H 1.09004 * 109.47205 * 45.46368 * 19 18 15 39 39 H 1.08998 * 109.46965 * 285.46859 * 19 18 15 40 40 H 1.08004 * 120.40060 * 0.02562 * 21 20 19 41 41 H 1.07998 * 120.79613 * 179.97438 * 22 21 20 42 42 H 1.07997 * 119.63983 * 180.20558 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9766 0.5639 -1.2509 6 6 4.0014 -0.8957 -1.3758 7 6 5.2434 -1.4354 -0.7144 8 1 5.9089 -0.7671 -0.1883 9 6 5.5298 -2.7824 -0.7810 10 7 4.7196 -3.5962 -1.4221 11 14 7.0689 -3.4516 0.0394 12 1 7.0168 -3.1675 1.4960 13 1 7.1470 -4.9187 -0.1768 14 1 8.2666 -2.8006 -0.5495 15 16 4.4473 1.5120 -2.5244 16 8 3.7048 2.7192 -2.4219 17 8 4.4220 0.6792 -3.6755 18 7 6.0338 1.9161 -2.2746 19 6 7.0656 0.8762 -2.2888 20 6 8.4246 1.5184 -2.3970 21 6 9.1551 1.7678 -1.2503 22 6 10.4037 2.3593 -1.3596 23 6 10.8719 2.6847 -2.6259 24 9 12.0811 3.2672 -2.7798 25 6 10.0851 2.4000 -3.7286 26 7 8.9019 1.8358 -3.5845 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.6887 1.8463 0.8899 31 1 1.6886 1.8463 -0.8900 32 1 3.8508 0.5684 0.8427 33 1 3.9785 2.1764 0.0902 34 1 3.1199 -1.3167 -0.8922 35 1 4.0031 -1.1700 -2.4307 36 1 4.9214 -4.5438 -1.4693 37 1 6.2798 2.8413 -2.1189 38 1 6.9059 0.2175 -3.1425 39 1 7.0100 0.2966 -1.3674 40 1 8.7576 1.5050 -0.2811 41 1 10.9963 2.5662 -0.4807 42 1 10.4423 2.6464 -4.7175 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336901078.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:17 Heat of formation + Delta-G solvation = -150.480537 kcal Electronic energy + Delta-G solvation = -29254.376359 eV Core-core repulsion = 24889.321710 eV Total energy + Delta-G solvation = -4365.054649 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.115 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -50.02583 -41.23427 -39.01826 -38.29160 -36.95200 -36.84807 -36.35014 -34.45917 -33.55234 -31.94795 -30.96871 -28.43598 -27.14831 -26.95355 -24.93453 -24.55145 -23.32043 -23.14563 -20.43542 -18.95865 -18.69216 -18.61035 -18.39440 -18.24488 -17.58144 -17.20252 -17.01670 -16.84148 -16.47895 -16.40159 -15.82809 -15.73793 -15.17352 -14.99768 -14.97112 -14.55357 -14.40092 -14.21323 -13.92530 -13.81349 -13.49416 -13.45656 -13.30672 -13.18843 -13.11129 -12.85587 -12.71126 -12.65641 -12.45385 -12.16917 -11.95185 -11.80368 -11.58236 -10.99018 -10.63666 -10.53835 -10.51450 -10.38340 -9.99659 -9.66265 -8.04084 -6.16733 -0.44582 -0.09376 0.08510 1.50193 1.51991 1.58383 2.00758 2.48430 2.52763 2.70224 2.92168 3.03737 3.17725 3.29349 3.47034 3.63651 3.76744 3.84964 4.01522 4.19450 4.26612 4.44224 4.51727 4.55656 4.56883 4.58725 4.62597 4.74216 4.84120 4.87279 4.89537 4.97198 4.98501 5.17210 5.54422 5.57137 5.67604 5.87051 5.96743 6.17474 6.25429 6.44166 6.78930 6.95517 7.51947 9.04363 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.010307 B = 0.004120 C = 0.003276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2715.947884 B = 6795.256880 C = 8545.772710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.407 6.407 3 C 0.038 3.962 4 C 0.127 3.873 5 N -0.986 5.986 6 C 0.261 3.739 7 C -0.533 4.533 8 H 0.084 0.916 9 C 0.010 3.990 10 N -0.931 5.931 11 Si 0.951 3.049 12 H -0.263 1.263 13 H -0.298 1.298 14 H -0.260 1.260 15 S 2.798 3.202 16 O -1.003 7.003 17 O -1.018 7.018 18 N -1.107 6.107 19 C 0.174 3.826 20 C 0.097 3.903 21 C -0.119 4.119 22 C -0.099 4.099 23 C 0.046 3.954 24 F -0.130 7.130 25 C 0.068 3.932 26 N -0.475 5.475 27 H 0.060 0.940 28 H 0.039 0.961 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.041 0.959 32 H 0.091 0.909 33 H 0.112 0.888 34 H 0.030 0.970 35 H 0.011 0.989 36 H 0.261 0.739 37 H 0.421 0.579 38 H 0.066 0.934 39 H 0.106 0.894 40 H 0.175 0.825 41 H 0.182 0.818 42 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.332 14.202 5.748 16.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.326 6.326 3 C -0.040 4.040 4 C 0.001 3.999 5 N -0.827 5.827 6 C 0.138 3.862 7 C -0.572 4.572 8 H 0.102 0.898 9 C -0.190 4.190 10 N -0.571 5.571 11 Si 0.776 3.224 12 H -0.187 1.187 13 H -0.224 1.224 14 H -0.184 1.184 15 S 2.806 3.194 16 O -0.987 6.987 17 O -1.001 7.001 18 N -0.869 5.869 19 C 0.047 3.953 20 C -0.042 4.042 21 C -0.139 4.139 22 C -0.125 4.125 23 C 0.024 3.976 24 F -0.109 7.109 25 C -0.091 4.091 26 N -0.184 5.184 27 H 0.079 0.921 28 H 0.057 0.943 29 H 0.102 0.898 30 H 0.104 0.896 31 H 0.059 0.941 32 H 0.110 0.890 33 H 0.130 0.870 34 H 0.048 0.952 35 H 0.029 0.971 36 H 0.070 0.930 37 H 0.256 0.744 38 H 0.084 0.916 39 H 0.123 0.877 40 H 0.192 0.808 41 H 0.199 0.801 42 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 6.331 13.753 4.171 15.704 hybrid contribution 1.214 -0.178 0.856 1.496 sum 7.545 13.575 5.026 16.324 Atomic orbital electron populations 1.22869 0.80634 1.03068 1.00569 1.88050 1.20588 1.28529 1.95441 1.23226 0.94921 0.84726 1.01170 1.21420 0.92238 0.98944 0.87278 1.57495 1.79086 1.17555 1.28558 1.18793 0.97409 0.73803 0.96223 1.21838 1.08204 0.93155 1.33986 0.89808 1.25803 0.99631 0.97556 0.95959 1.70096 1.39081 1.04371 1.43565 0.85713 0.80269 0.76838 0.79549 1.18737 1.22429 1.18414 1.01195 0.73063 0.71762 0.73337 1.93531 1.70200 1.47312 1.87673 1.93538 1.86983 1.69864 1.49753 1.55572 1.24185 1.16711 1.90439 1.20136 0.82364 0.88549 1.04240 1.21280 0.96406 0.97327 0.89171 1.22239 0.93856 0.97089 1.00715 1.22010 0.96373 0.96746 0.97403 1.18930 0.83063 0.99576 0.96045 1.91528 1.41276 1.81618 1.96467 1.23240 0.89591 0.96388 0.99911 1.67544 1.13228 1.10144 1.27450 0.92118 0.94266 0.89794 0.89584 0.94085 0.89046 0.86961 0.95183 0.97068 0.93018 0.74353 0.91576 0.87652 0.80792 0.80101 0.79789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.67 11.01 113.37 1.25 1.92 16 2 O -0.41 -14.61 8.99 -148.98 -1.34 -15.95 16 3 C 0.04 1.14 6.28 71.98 0.45 1.59 16 4 C 0.13 3.94 5.75 86.38 0.50 4.43 16 5 N -0.99 -38.80 2.83 -519.82 -1.47 -40.27 16 6 C 0.26 13.01 5.32 85.63 0.46 13.47 16 7 C -0.53 -26.20 8.51 25.60 0.22 -25.98 16 8 H 0.08 3.64 6.45 -2.91 -0.02 3.62 16 9 C 0.01 0.50 5.46 84.65 0.46 0.96 16 10 N -0.93 -54.12 13.29 21.45 0.28 -53.83 16 11 Si 0.95 40.20 29.54 68.60 2.03 42.23 16 12 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 13 H -0.30 -13.06 7.11 99.48 0.71 -12.36 16 14 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 15 S 2.80 108.29 6.07 -56.49 -0.34 107.95 16 16 O -1.00 -38.46 17.17 -128.00 -2.20 -40.66 16 17 O -1.02 -49.56 16.01 -128.00 -2.05 -51.61 16 18 N -1.11 -33.79 6.05 -190.79 -1.15 -34.94 16 19 C 0.17 5.59 6.51 85.63 0.56 6.14 16 20 C 0.10 2.59 6.17 42.55 0.26 2.85 16 21 C -0.12 -2.30 9.72 22.35 0.22 -2.08 16 22 C -0.10 -1.61 10.16 22.51 0.23 -1.38 16 23 C 0.05 0.87 7.35 22.47 0.17 1.04 16 24 F -0.13 -2.43 17.28 44.97 0.78 -1.65 16 25 C 0.07 1.49 11.17 84.73 0.95 2.44 16 26 N -0.47 -13.42 10.27 -183.71 -1.89 -15.31 16 27 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 30 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.04 1.31 7.97 -2.39 -0.02 1.29 16 32 H 0.09 2.86 8.09 -2.39 -0.02 2.84 16 33 H 0.11 2.63 7.78 -2.39 -0.02 2.62 16 34 H 0.03 1.64 6.56 -2.39 -0.02 1.62 16 35 H 0.01 0.65 6.77 -2.39 -0.02 0.63 16 36 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 37 H 0.42 10.22 8.64 -96.74 -0.84 9.39 16 38 H 0.07 2.58 7.76 -2.38 -0.02 2.57 16 39 H 0.11 3.35 5.75 -2.39 -0.01 3.33 16 40 H 0.17 2.52 8.06 -2.91 -0.02 2.49 16 41 H 0.18 1.72 8.06 -2.91 -0.02 1.69 16 42 H 0.19 3.12 8.06 -2.91 -0.02 3.09 16 Total: -1.00 -73.54 373.07 -1.42 -74.96 By element: Atomic # 1 Polarization: 23.46 SS G_CDS: 0.23 Total: 23.68 kcal Atomic # 6 Polarization: -0.31 SS G_CDS: 5.71 Total: 5.40 kcal Atomic # 7 Polarization: -140.13 SS G_CDS: -4.23 Total: -144.36 kcal Atomic # 8 Polarization: -102.63 SS G_CDS: -5.59 Total: -108.22 kcal Atomic # 9 Polarization: -2.43 SS G_CDS: 0.78 Total: -1.65 kcal Atomic # 14 Polarization: 40.20 SS G_CDS: 2.03 Total: 42.23 kcal Atomic # 16 Polarization: 108.29 SS G_CDS: -0.34 Total: 107.95 kcal Total: -73.54 -1.42 -74.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336901078.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.522 kcal (2) G-P(sol) polarization free energy of solvation -73.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds