Wall clock time and date at job start Wed Apr 1 2020 03:59:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46505 * 109.46952 * 2 1 4 4 C 1.46500 * 119.99903 * 274.99586 * 3 2 1 5 5 C 1.50701 * 109.47429 * 280.20162 * 4 3 2 6 6 H 1.08004 * 119.99588 * 4.55342 * 5 4 3 7 7 C 1.37868 * 120.00085 * 184.55077 * 5 4 3 8 8 N 1.31517 * 120.00367 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 119.99975 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47161 * 90.00220 * 9 7 5 11 11 H 1.48500 * 109.46939 * 210.00186 * 9 7 5 12 12 H 1.48497 * 109.46993 * 330.00181 * 9 7 5 13 13 S 1.65601 * 119.99999 * 95.00128 * 3 2 1 14 14 O 1.42102 * 106.40044 * 330.03759 * 13 3 2 15 15 O 1.42094 * 106.39963 * 197.12194 * 13 3 2 16 16 N 1.65600 * 107.21730 * 83.57788 * 13 3 2 17 17 C 1.46504 * 119.99906 * 65.15888 * 16 13 3 18 18 C 1.52998 * 109.47158 * 165.78584 * 17 16 13 19 19 H 1.08990 * 109.47265 * 304.99651 * 18 17 16 20 20 C 1.53002 * 109.47102 * 64.99797 * 18 17 16 21 21 C 1.50700 * 109.46747 * 184.99477 * 18 17 16 22 22 N 1.29021 * 124.92017 * 300.02382 * 21 18 17 23 23 C 1.31779 * 117.12797 * 179.73863 * 22 21 18 24 24 C 1.33642 * 114.49998 * 359.97438 * 23 22 21 25 25 C 1.50703 * 126.03644 * 179.97438 * 24 23 22 26 26 S 1.70976 * 124.91545 * 119.72372 * 21 18 17 27 27 H 1.09000 * 109.47116 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47567 * 300.00342 * 1 2 3 29 29 H 1.09009 * 109.47004 * 59.99953 * 1 2 3 30 30 H 1.09000 * 109.47235 * 240.00048 * 2 1 3 31 31 H 1.09001 * 109.46750 * 119.99802 * 2 1 3 32 32 H 1.08999 * 109.46927 * 40.20328 * 4 3 2 33 33 H 1.08998 * 109.46952 * 160.19772 * 4 3 2 34 34 H 0.96998 * 120.00507 * 179.97438 * 8 7 5 35 35 H 0.96998 * 120.00357 * 245.14729 * 16 13 3 36 36 H 1.08998 * 109.46975 * 45.77956 * 17 16 13 37 37 H 1.09004 * 109.46699 * 285.78614 * 17 16 13 38 38 H 1.09002 * 109.47354 * 59.99452 * 20 18 17 39 39 H 1.08996 * 109.46985 * 179.97438 * 20 18 17 40 40 H 1.09005 * 109.46710 * 299.99790 * 20 18 17 41 41 H 1.08001 * 122.75001 * 179.97438 * 23 22 21 42 42 H 1.08995 * 109.46613 * 90.03125 * 25 24 23 43 43 H 1.08999 * 109.46675 * 210.02914 * 25 24 23 44 44 H 1.08991 * 109.47473 * 330.03090 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1583 2.1087 -1.2639 5 6 3.4367 1.6921 -1.9445 6 1 4.0435 0.9063 -1.5192 7 6 3.8315 2.3139 -3.1099 8 7 3.0929 3.2710 -3.6275 9 14 5.4166 1.7978 -3.9531 10 1 5.1300 0.7106 -4.9232 11 1 5.9969 2.9612 -4.6707 12 1 6.3828 1.3115 -2.9357 13 16 2.4122 2.1203 1.4287 14 8 1.5758 1.5439 2.4224 15 8 2.4531 3.5151 1.1609 16 7 3.9613 1.6701 1.8027 17 6 5.0725 2.0851 0.9428 18 6 6.3965 1.8565 1.6747 19 1 6.3744 2.3714 2.6350 20 6 6.6002 0.3576 1.9042 21 6 7.5305 2.3957 0.8414 22 7 7.8273 1.9964 -0.3490 23 6 8.8502 2.5793 -0.9408 24 6 9.4495 3.5235 -0.2091 25 6 10.6379 4.3496 -0.6290 26 16 8.6057 3.6305 1.3339 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8901 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.3111 1.8799 -1.9105 33 1 2.1848 3.1801 -1.0654 34 1 3.3709 3.7087 -4.4472 35 1 4.1330 1.1317 2.5911 36 1 4.9690 3.1427 0.7006 37 1 5.0593 1.4989 0.0239 38 1 6.6222 -0.1574 0.9437 39 1 7.5437 0.1947 2.4251 40 1 5.7799 -0.0325 2.5068 41 1 9.1775 2.3157 -1.9357 42 1 10.2927 5.2565 -1.1254 43 1 11.2234 4.6171 0.2506 44 1 11.2570 3.7726 -1.3158 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336910799.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:59:47 Heat of formation + Delta-G solvation = -46.159307 kcal Electronic energy + Delta-G solvation = -27601.073520 eV Core-core repulsion = 23806.755755 eV Total energy + Delta-G solvation = -3794.317764 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.112 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.76025 -36.78389 -36.45905 -35.96155 -35.17003 -33.06243 -32.64557 -31.40234 -29.88127 -27.04257 -26.59957 -25.74687 -24.24637 -23.10949 -21.75394 -21.59381 -19.05370 -18.59841 -18.02518 -17.08809 -16.75442 -16.40160 -15.78159 -15.31478 -15.11288 -14.71795 -14.32712 -14.18276 -13.95177 -13.75951 -13.27386 -13.18637 -13.01235 -12.85780 -12.82666 -12.69312 -12.01377 -11.97775 -11.80274 -11.66739 -11.62802 -11.35003 -11.29999 -11.24775 -11.17007 -11.02376 -10.90902 -10.81283 -10.46885 -10.31355 -9.94795 -9.73345 -9.44159 -9.16476 -8.95701 -8.68336 -8.43449 -8.01150 -6.05028 -4.11510 0.73877 1.28742 1.40288 1.76923 2.95251 3.31876 3.38760 3.49470 3.56779 4.13508 4.25451 4.45500 4.83021 4.87236 4.97548 5.04391 5.11133 5.19754 5.29457 5.34012 5.44562 5.45679 5.64166 5.67128 5.77686 5.80275 5.85521 5.86288 6.00286 6.11050 6.19105 6.20485 6.35545 6.39734 6.57232 6.71071 6.75261 7.30061 7.42309 7.49845 7.72841 7.88322 7.91744 8.21127 8.93084 9.55379 11.02499 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.010543 B = 0.004872 C = 0.003754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2655.190711 B = 5746.077354 C = 7457.746722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.132 3.868 3 N -0.990 5.990 4 C 0.243 3.757 5 C -0.536 4.536 6 H 0.065 0.935 7 C 0.068 3.932 8 N -0.890 5.890 9 Si 0.878 3.122 10 H -0.284 1.284 11 H -0.290 1.290 12 H -0.252 1.252 13 S 2.786 3.214 14 O -1.000 7.000 15 O -0.978 6.978 16 N -1.131 6.131 17 C 0.131 3.869 18 C -0.019 4.019 19 H 0.091 0.909 20 C -0.138 4.138 21 C 0.062 3.938 22 N -0.451 5.451 23 C 0.040 3.960 24 C -0.230 4.230 25 C -0.072 4.072 26 S 0.104 5.896 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.060 0.940 30 H 0.080 0.920 31 H 0.059 0.941 32 H 0.033 0.967 33 H 0.055 0.945 34 H 0.263 0.737 35 H 0.405 0.595 36 H 0.079 0.921 37 H 0.101 0.899 38 H 0.072 0.928 39 H 0.054 0.946 40 H 0.066 0.934 41 H 0.171 0.829 42 H 0.076 0.924 43 H 0.068 0.932 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.180 -3.229 9.918 15.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.006 3.994 3 N -0.832 5.832 4 C 0.121 3.879 5 C -0.575 4.575 6 H 0.083 0.917 7 C -0.135 4.135 8 N -0.528 5.528 9 Si 0.705 3.295 10 H -0.210 1.210 11 H -0.216 1.216 12 H -0.175 1.175 13 S 2.793 3.207 14 O -0.985 6.985 15 O -0.962 6.962 16 N -0.890 5.890 17 C 0.004 3.996 18 C -0.043 4.043 19 H 0.110 0.890 20 C -0.197 4.197 21 C -0.217 4.217 22 N -0.163 5.163 23 C -0.111 4.111 24 C -0.351 4.351 25 C -0.132 4.132 26 S 0.360 5.640 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.099 0.901 31 H 0.078 0.922 32 H 0.051 0.949 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.238 0.762 36 H 0.097 0.903 37 H 0.119 0.881 38 H 0.091 0.909 39 H 0.074 0.926 40 H 0.084 0.916 41 H 0.188 0.812 42 H 0.094 0.906 43 H 0.087 0.913 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 10.377 -2.191 10.754 15.104 hybrid contribution 1.475 -0.872 -1.555 2.314 sum 11.852 -3.062 9.199 15.312 Atomic orbital electron populations 1.22215 0.97001 1.01285 1.02475 1.20943 0.93596 0.82887 1.01990 1.57706 1.78517 1.22946 1.24067 1.19224 0.97274 0.92524 0.78871 1.21504 1.07218 1.20223 1.08540 0.91692 1.24908 0.96945 0.94632 0.97044 1.69941 1.38167 1.23995 1.20724 0.86750 0.84539 0.78017 0.80187 1.21049 1.21584 1.17504 1.01729 0.72536 0.73734 0.72665 1.93549 1.65336 1.79849 1.59719 1.93577 1.86491 1.30970 1.85159 1.56041 1.25235 1.70297 1.37443 1.21386 0.82665 1.02100 0.93483 1.20044 0.90143 0.97629 0.96472 0.89035 1.21798 1.01447 0.93270 1.03156 1.26812 1.01619 0.98125 0.95163 1.66197 1.15146 1.27867 1.07125 1.21718 0.92807 0.95102 1.01463 1.25935 1.05772 1.05649 0.97758 1.20196 0.92820 0.98549 1.01595 1.83823 1.25492 1.37599 1.17109 0.92487 0.92493 0.92120 0.90144 0.92218 0.94869 0.92709 0.92772 0.76205 0.90306 0.88098 0.90894 0.92648 0.91551 0.81152 0.90556 0.91315 0.90381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.72 10.24 37.16 0.38 -2.33 16 2 C 0.13 2.28 6.02 -4.04 -0.02 2.26 16 3 N -0.99 -20.19 2.84 -115.66 -0.33 -20.52 16 4 C 0.24 6.00 5.46 -5.19 -0.03 5.97 16 5 C -0.54 -13.80 8.49 -34.44 -0.29 -14.09 16 6 H 0.07 1.61 6.49 -52.48 -0.34 1.27 16 7 C 0.07 1.85 5.46 -17.82 -0.10 1.75 16 8 N -0.89 -25.68 13.29 55.43 0.74 -24.95 16 9 Si 0.88 20.84 29.54 -169.99 -5.02 15.82 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 12 H -0.25 -5.81 7.11 56.52 0.40 -5.41 16 13 S 2.79 54.70 6.07 -107.50 -0.65 54.05 16 14 O -1.00 -20.07 17.17 -57.17 -0.98 -21.05 16 15 O -0.98 -22.90 16.02 -57.17 -0.92 -23.81 16 16 N -1.13 -17.87 5.93 -10.61 -0.06 -17.93 16 17 C 0.13 2.24 5.57 -4.04 -0.02 2.22 16 18 C -0.02 -0.26 2.92 -91.77 -0.27 -0.53 16 19 H 0.09 1.04 8.12 -51.93 -0.42 0.61 16 20 C -0.14 -1.60 9.04 37.16 0.34 -1.27 16 21 C 0.06 0.92 5.91 -13.46 -0.08 0.84 16 22 N -0.45 -7.63 10.53 -11.86 -0.12 -7.76 16 23 C 0.04 0.59 11.25 -19.18 -0.22 0.37 16 24 C -0.23 -2.87 6.60 -35.92 -0.24 -3.10 16 25 C -0.07 -0.63 10.42 36.01 0.38 -0.26 16 26 S 0.10 1.29 23.17 -107.50 -2.49 -1.20 16 27 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 28 H 0.06 0.94 7.96 -51.93 -0.41 0.53 16 29 H 0.06 1.01 8.10 -51.92 -0.42 0.59 16 30 H 0.08 1.39 8.09 -51.93 -0.42 0.97 16 31 H 0.06 0.90 7.79 -51.93 -0.40 0.49 16 32 H 0.03 0.85 8.10 -51.93 -0.42 0.43 16 33 H 0.05 1.51 6.77 -51.93 -0.35 1.16 16 34 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 35 H 0.41 5.04 7.42 -34.47 -0.26 4.78 16 36 H 0.08 1.52 7.76 -51.93 -0.40 1.12 16 37 H 0.10 1.97 5.86 -51.93 -0.30 1.66 16 38 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 39 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.07 0.65 6.91 -51.93 -0.36 0.30 16 41 H 0.17 2.24 8.06 -52.49 -0.42 1.82 16 42 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 44 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 LS Contribution 387.84 15.07 5.84 5.84 Total: -1.00 -33.12 387.84 -10.78 -43.90 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -6.61 Total: 5.79 kcal Atomic # 6 Polarization: -8.01 SS G_CDS: -0.17 Total: -8.18 kcal Atomic # 7 Polarization: -71.38 SS G_CDS: 0.22 Total: -71.16 kcal Atomic # 8 Polarization: -42.96 SS G_CDS: -1.90 Total: -44.86 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Atomic # 16 Polarization: 55.99 SS G_CDS: -3.14 Total: 52.85 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.12 -10.78 -43.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336910799.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.260 kcal (2) G-P(sol) polarization free energy of solvation -33.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds