Wall clock time and date at job start Wed Apr 1 2020 03:59:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46505 * 109.46952 * 2 1 4 4 C 1.46500 * 119.99903 * 274.99586 * 3 2 1 5 5 C 1.50701 * 109.47429 * 280.20162 * 4 3 2 6 6 H 1.08004 * 119.99588 * 4.55342 * 5 4 3 7 7 C 1.37868 * 120.00085 * 184.55077 * 5 4 3 8 8 N 1.31517 * 120.00367 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 119.99975 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47161 * 90.00220 * 9 7 5 11 11 H 1.48500 * 109.46939 * 210.00186 * 9 7 5 12 12 H 1.48497 * 109.46993 * 330.00181 * 9 7 5 13 13 S 1.65601 * 119.99999 * 95.00128 * 3 2 1 14 14 O 1.42102 * 106.40044 * 330.03759 * 13 3 2 15 15 O 1.42094 * 106.39963 * 197.12194 * 13 3 2 16 16 N 1.65600 * 107.21730 * 83.57788 * 13 3 2 17 17 C 1.46504 * 119.99906 * 65.15888 * 16 13 3 18 18 C 1.52998 * 109.47158 * 165.78584 * 17 16 13 19 19 H 1.08990 * 109.47265 * 304.99651 * 18 17 16 20 20 C 1.53002 * 109.47102 * 64.99797 * 18 17 16 21 21 C 1.50700 * 109.46747 * 184.99477 * 18 17 16 22 22 N 1.29021 * 124.92017 * 300.02382 * 21 18 17 23 23 C 1.31779 * 117.12797 * 179.73863 * 22 21 18 24 24 C 1.33642 * 114.49998 * 359.97438 * 23 22 21 25 25 C 1.50703 * 126.03644 * 179.97438 * 24 23 22 26 26 S 1.70976 * 124.91545 * 119.72372 * 21 18 17 27 27 H 1.09000 * 109.47116 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47567 * 300.00342 * 1 2 3 29 29 H 1.09009 * 109.47004 * 59.99953 * 1 2 3 30 30 H 1.09000 * 109.47235 * 240.00048 * 2 1 3 31 31 H 1.09001 * 109.46750 * 119.99802 * 2 1 3 32 32 H 1.08999 * 109.46927 * 40.20328 * 4 3 2 33 33 H 1.08998 * 109.46952 * 160.19772 * 4 3 2 34 34 H 0.96998 * 120.00507 * 179.97438 * 8 7 5 35 35 H 0.96998 * 120.00357 * 245.14729 * 16 13 3 36 36 H 1.08998 * 109.46975 * 45.77956 * 17 16 13 37 37 H 1.09004 * 109.46699 * 285.78614 * 17 16 13 38 38 H 1.09002 * 109.47354 * 59.99452 * 20 18 17 39 39 H 1.08996 * 109.46985 * 179.97438 * 20 18 17 40 40 H 1.09005 * 109.46710 * 299.99790 * 20 18 17 41 41 H 1.08001 * 122.75001 * 179.97438 * 23 22 21 42 42 H 1.08995 * 109.46613 * 90.03125 * 25 24 23 43 43 H 1.08999 * 109.46675 * 210.02914 * 25 24 23 44 44 H 1.08991 * 109.47473 * 330.03090 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1583 2.1087 -1.2639 5 6 3.4367 1.6921 -1.9445 6 1 4.0435 0.9063 -1.5192 7 6 3.8315 2.3139 -3.1099 8 7 3.0929 3.2710 -3.6275 9 14 5.4166 1.7978 -3.9531 10 1 5.1300 0.7106 -4.9232 11 1 5.9969 2.9612 -4.6707 12 1 6.3828 1.3115 -2.9357 13 16 2.4122 2.1203 1.4287 14 8 1.5758 1.5439 2.4224 15 8 2.4531 3.5151 1.1609 16 7 3.9613 1.6701 1.8027 17 6 5.0725 2.0851 0.9428 18 6 6.3965 1.8565 1.6747 19 1 6.3744 2.3714 2.6350 20 6 6.6002 0.3576 1.9042 21 6 7.5305 2.3957 0.8414 22 7 7.8273 1.9964 -0.3490 23 6 8.8502 2.5793 -0.9408 24 6 9.4495 3.5235 -0.2091 25 6 10.6379 4.3496 -0.6290 26 16 8.6057 3.6305 1.3339 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8901 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.3111 1.8799 -1.9105 33 1 2.1848 3.1801 -1.0654 34 1 3.3709 3.7087 -4.4472 35 1 4.1330 1.1317 2.5911 36 1 4.9690 3.1427 0.7006 37 1 5.0593 1.4989 0.0239 38 1 6.6222 -0.1574 0.9437 39 1 7.5437 0.1947 2.4251 40 1 5.7799 -0.0325 2.5068 41 1 9.1775 2.3157 -1.9357 42 1 10.2927 5.2565 -1.1254 43 1 11.2234 4.6171 0.2506 44 1 11.2570 3.7726 -1.3158 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336910799.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:59:46 Heat of formation + Delta-G solvation = -69.948449 kcal Electronic energy + Delta-G solvation = -27602.105094 eV Core-core repulsion = 23806.755755 eV Total energy + Delta-G solvation = -3795.349339 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.112 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.82364 -38.34817 -37.83873 -37.58508 -36.87785 -34.65853 -34.15870 -32.41740 -31.48970 -28.49594 -27.97922 -26.93542 -25.29785 -24.92954 -23.26066 -22.77349 -20.52535 -19.74853 -19.14794 -18.62011 -18.54183 -18.20709 -17.31834 -16.79476 -16.31624 -16.16816 -15.79736 -15.35191 -15.29496 -15.03447 -14.73386 -14.59746 -14.21068 -13.97100 -13.77691 -13.74259 -13.64463 -13.58723 -13.33994 -13.18811 -13.04510 -12.98989 -12.73633 -12.70627 -12.65454 -12.35957 -12.23543 -12.16496 -12.10969 -11.94037 -11.69077 -11.55019 -10.61277 -10.52691 -10.35045 -10.15585 -9.77601 -9.68589 -8.14848 -6.26394 -0.35440 -0.20455 0.37972 0.74216 1.40605 1.43775 1.60765 1.85915 2.01944 2.45595 2.62011 3.17123 3.18546 3.45445 3.86116 3.88428 3.97345 4.02682 4.07764 4.26216 4.38889 4.43199 4.48000 4.57122 4.70076 4.73519 4.82874 4.87551 4.89865 4.91298 5.02184 5.04391 5.16494 5.19172 5.24280 5.31001 5.39932 5.44873 5.55674 5.80397 5.93033 6.13760 6.24637 6.84105 6.85722 7.43862 8.92909 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.010543 B = 0.004872 C = 0.003754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2655.190711 B = 5746.077354 C = 7457.746722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.122 3.878 3 N -0.995 5.995 4 C 0.260 3.740 5 C -0.527 4.527 6 H 0.074 0.926 7 C 0.016 3.984 8 N -0.929 5.929 9 Si 0.939 3.061 10 H -0.279 1.279 11 H -0.294 1.294 12 H -0.244 1.244 13 S 2.799 3.201 14 O -1.001 7.001 15 O -1.019 7.019 16 N -1.110 6.110 17 C 0.138 3.862 18 C -0.016 4.016 19 H 0.117 0.883 20 C -0.133 4.133 21 C 0.033 3.967 22 N -0.488 5.488 23 C 0.006 3.994 24 C -0.220 4.220 25 C -0.074 4.074 26 S 0.145 5.855 27 H 0.090 0.910 28 H 0.049 0.951 29 H 0.045 0.955 30 H 0.079 0.921 31 H 0.088 0.912 32 H 0.017 0.983 33 H 0.020 0.980 34 H 0.262 0.738 35 H 0.425 0.575 36 H 0.049 0.951 37 H 0.076 0.924 38 H 0.051 0.949 39 H 0.073 0.927 40 H 0.085 0.915 41 H 0.177 0.823 42 H 0.082 0.918 43 H 0.086 0.914 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.104 -4.434 11.518 18.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.003 4.003 3 N -0.836 5.836 4 C 0.136 3.864 5 C -0.566 4.566 6 H 0.092 0.908 7 C -0.183 4.183 8 N -0.570 5.570 9 Si 0.764 3.236 10 H -0.205 1.205 11 H -0.221 1.221 12 H -0.167 1.167 13 S 2.807 3.193 14 O -0.985 6.985 15 O -1.003 7.003 16 N -0.874 5.874 17 C 0.009 3.991 18 C -0.039 4.039 19 H 0.135 0.865 20 C -0.192 4.192 21 C -0.245 4.245 22 N -0.202 5.202 23 C -0.145 4.145 24 C -0.341 4.341 25 C -0.133 4.133 26 S 0.400 5.600 27 H 0.109 0.891 28 H 0.068 0.932 29 H 0.064 0.936 30 H 0.098 0.902 31 H 0.106 0.894 32 H 0.035 0.965 33 H 0.038 0.962 34 H 0.071 0.929 35 H 0.262 0.738 36 H 0.067 0.933 37 H 0.094 0.906 38 H 0.070 0.930 39 H 0.092 0.908 40 H 0.104 0.896 41 H 0.194 0.806 42 H 0.101 0.899 43 H 0.105 0.895 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 12.288 -3.440 12.394 17.788 hybrid contribution 0.896 -0.474 -1.982 2.226 sum 13.184 -3.914 10.412 17.249 Atomic orbital electron populations 1.22198 0.95986 1.03170 1.01358 1.21248 0.94572 0.81152 1.03345 1.57605 1.79266 1.24170 1.22587 1.18725 0.96365 0.91043 0.80285 1.21758 1.07217 1.19590 1.08010 0.90801 1.25668 0.99783 0.94801 0.98032 1.70068 1.39998 1.25545 1.21350 0.85799 0.81171 0.77393 0.79201 1.20540 1.22082 1.16673 1.01144 0.73099 0.72793 0.72232 1.93542 1.65958 1.79580 1.59384 1.93530 1.87259 1.33796 1.85666 1.55562 1.23592 1.70277 1.37945 1.21181 0.84785 0.99696 0.93393 1.20087 0.87656 0.99418 0.96743 0.86468 1.21777 1.03277 0.91519 1.02586 1.26988 1.02790 0.99427 0.95282 1.66162 1.16352 1.29356 1.08321 1.21932 0.93515 0.96637 1.02371 1.26439 1.05873 1.04495 0.97288 1.20377 0.91751 0.98350 1.02834 1.83592 1.24104 1.35734 1.16541 0.89116 0.93229 0.93594 0.90228 0.89364 0.96501 0.96192 0.92931 0.73835 0.93257 0.90625 0.92976 0.90798 0.89591 0.80584 0.89923 0.89476 0.88768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.14 10.24 71.98 0.74 -4.41 16 2 C 0.12 4.06 6.02 86.38 0.52 4.58 16 3 N -1.00 -40.80 2.84 -519.83 -1.48 -42.28 16 4 C 0.26 13.24 5.46 85.63 0.47 13.71 16 5 C -0.53 -27.65 8.49 25.60 0.22 -27.43 16 6 H 0.07 3.69 6.49 -2.91 -0.02 3.67 16 7 C 0.02 0.91 5.46 84.65 0.46 1.37 16 8 N -0.93 -55.30 13.29 21.44 0.28 -55.01 16 9 Si 0.94 43.71 29.54 68.60 2.03 45.73 16 10 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 11 H -0.29 -13.84 7.11 99.48 0.71 -13.14 16 12 H -0.24 -10.94 7.11 99.48 0.71 -10.24 16 13 S 2.80 109.44 6.07 -56.49 -0.34 109.10 16 14 O -1.00 -38.73 17.17 -128.00 -2.20 -40.93 16 15 O -1.02 -48.97 16.02 -128.00 -2.05 -51.02 16 16 N -1.11 -33.84 5.93 -187.48 -1.11 -34.95 16 17 C 0.14 4.67 5.57 86.38 0.48 5.15 16 18 C -0.02 -0.40 2.92 -11.54 -0.03 -0.43 16 19 H 0.12 2.36 8.12 -2.39 -0.02 2.34 16 20 C -0.13 -2.81 9.04 71.98 0.65 -2.15 16 21 C 0.03 0.96 5.91 88.52 0.52 1.48 16 22 N -0.49 -16.35 10.53 -191.45 -2.02 -18.37 16 23 C 0.01 0.16 11.25 83.66 0.94 1.10 16 24 C -0.22 -5.08 6.60 24.64 0.16 -4.92 16 25 C -0.07 -1.10 10.42 71.24 0.74 -0.35 16 26 S 0.14 3.31 23.17 -56.49 -1.31 2.00 16 27 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 28 H 0.05 1.58 7.96 -2.39 -0.02 1.56 16 29 H 0.04 1.52 8.10 -2.38 -0.02 1.50 16 30 H 0.08 2.66 8.09 -2.39 -0.02 2.64 16 31 H 0.09 2.43 7.79 -2.39 -0.02 2.41 16 32 H 0.02 0.91 8.10 -2.39 -0.02 0.89 16 33 H 0.02 1.16 6.77 -2.39 -0.02 1.15 16 34 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 35 H 0.42 9.49 7.42 -96.75 -0.72 8.77 16 36 H 0.05 1.96 7.76 -2.39 -0.02 1.94 16 37 H 0.08 2.98 5.86 -2.39 -0.01 2.96 16 38 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.09 1.43 6.91 -2.38 -0.02 1.41 16 41 H 0.18 4.56 8.06 -2.91 -0.02 4.53 16 42 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 43 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 44 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -73.54 387.84 -2.03 -75.57 By element: Atomic # 1 Polarization: 22.16 SS G_CDS: 0.29 Total: 22.46 kcal Atomic # 6 Polarization: -18.18 SS G_CDS: 5.87 Total: -12.30 kcal Atomic # 7 Polarization: -146.29 SS G_CDS: -4.32 Total: -150.61 kcal Atomic # 8 Polarization: -87.70 SS G_CDS: -4.25 Total: -91.95 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.73 kcal Atomic # 16 Polarization: 112.75 SS G_CDS: -1.65 Total: 111.10 kcal Total: -73.54 -2.03 -75.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336910799.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.622 kcal (2) G-P(sol) polarization free energy of solvation -73.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds