Wall clock time and date at job start Wed Apr 1 2020 03:59:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46499 * 109.47012 * 2 1 4 4 C 1.46509 * 119.99869 * 275.00127 * 3 2 1 5 5 C 1.50697 * 109.46949 * 280.11979 * 4 3 2 6 6 H 1.08004 * 119.99923 * 4.11627 * 5 4 3 7 7 C 1.37874 * 120.00145 * 184.11406 * 5 4 3 8 8 N 1.31517 * 120.00067 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00127 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47088 * 90.00424 * 9 7 5 11 11 H 1.48500 * 109.47086 * 209.99971 * 9 7 5 12 12 H 1.48499 * 109.47320 * 330.00243 * 9 7 5 13 13 S 1.65596 * 120.00582 * 94.99885 * 3 2 1 14 14 O 1.42102 * 106.39814 * 330.09135 * 13 3 2 15 15 O 1.42095 * 106.40888 * 197.16773 * 13 3 2 16 16 N 1.65605 * 107.21780 * 83.62690 * 13 3 2 17 17 C 1.46505 * 119.99674 * 65.42430 * 16 13 3 18 18 C 1.52996 * 109.46660 * 165.64278 * 17 16 13 19 19 O 1.42894 * 109.47488 * 65.00158 * 18 17 16 20 20 C 1.35733 * 117.00339 * 179.97438 * 19 18 17 21 21 N 1.32231 * 119.69352 * 0.02562 * 20 19 18 22 22 C 1.31958 * 121.67024 * 179.97438 * 21 20 19 23 23 C 1.38064 * 120.88344 * 0.02589 * 22 21 20 24 24 C 1.38801 * 119.30411 * 359.97416 * 23 22 21 25 25 C 1.38572 * 118.46261 * 359.97438 * 24 23 22 26 26 F 1.35107 * 120.46119 * 180.02562 * 25 24 23 27 27 H 1.08998 * 109.46920 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.47084 * 300.00355 * 1 2 3 29 29 H 1.09005 * 109.47137 * 59.99993 * 1 2 3 30 30 H 1.08993 * 109.46722 * 239.99989 * 2 1 3 31 31 H 1.08995 * 109.46892 * 119.99515 * 2 1 3 32 32 H 1.09002 * 109.47228 * 40.12041 * 4 3 2 33 33 H 1.08995 * 109.47265 * 160.11908 * 4 3 2 34 34 H 0.96996 * 120.00517 * 179.97438 * 8 7 5 35 35 H 0.96996 * 120.00379 * 245.42902 * 16 13 3 36 36 H 1.08994 * 109.47010 * 45.63797 * 17 16 13 37 37 H 1.08998 * 109.47049 * 285.63665 * 17 16 13 38 38 H 1.09001 * 109.47381 * 304.99750 * 18 17 16 39 39 H 1.09007 * 109.47035 * 184.99865 * 18 17 16 40 40 H 1.08003 * 119.56313 * 179.97438 * 22 21 20 41 41 H 1.07997 * 120.35080 * 179.97438 * 23 22 21 42 42 H 1.07999 * 120.76720 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1582 2.1087 -1.2640 5 6 3.4375 1.6935 -1.9436 6 1 4.0486 0.9134 -1.5141 7 6 3.8279 2.3094 -3.1137 8 7 3.0841 3.2597 -3.6365 9 14 5.4141 1.7952 -3.9558 10 1 5.1311 0.7002 -4.9182 11 1 5.9880 2.9564 -4.6819 12 1 6.3841 1.3200 -2.9367 13 16 2.4122 2.1203 1.4286 14 8 1.5766 1.5432 2.4226 15 8 2.4522 3.5153 1.1611 16 7 3.9618 1.6712 1.8019 17 6 5.0730 2.0920 0.9449 18 6 6.3966 1.8659 1.6783 19 8 6.5911 0.4661 1.8894 20 6 7.7267 0.0917 2.5317 21 7 8.5887 1.0125 2.9287 22 6 9.7043 0.6924 3.5566 23 6 10.0140 -0.6264 3.8233 24 6 9.1363 -1.6246 3.4236 25 6 7.9726 -1.2569 2.7673 26 9 7.0896 -2.1953 2.3609 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5137 0.8900 32 1 1.3118 1.8788 -1.9112 33 1 2.1834 3.1802 -1.0657 34 1 3.3588 3.6933 -4.4595 35 1 4.1338 1.1295 2.5880 36 1 4.9665 3.1500 0.7052 37 1 5.0633 1.5082 0.0246 38 1 6.3713 2.3783 2.6401 39 1 7.2166 2.2602 1.0780 40 1 10.3846 1.4723 3.8654 41 1 10.9296 -0.8787 4.3374 42 1 9.3548 -2.6638 3.6204 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336953935.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:59:55 Heat of formation + Delta-G solvation = -121.692048 kcal Electronic energy + Delta-G solvation = -29189.504674 eV Core-core repulsion = 24825.698388 eV Total energy + Delta-G solvation = -4363.806286 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.115 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.01807 -40.72903 -38.35454 -36.62352 -36.00653 -35.17452 -34.89133 -32.70697 -32.61628 -30.70604 -29.89165 -28.61339 -26.60773 -24.41306 -23.54708 -23.13631 -22.18359 -21.62966 -19.00515 -18.65353 -17.90431 -17.45170 -17.12397 -16.77753 -16.64023 -16.40325 -15.79879 -15.65968 -15.27019 -14.97381 -14.58038 -14.25682 -13.96431 -13.73450 -13.47745 -13.26267 -13.14811 -12.93734 -12.72732 -12.66892 -12.20409 -12.03231 -11.92042 -11.66735 -11.41286 -11.27269 -11.21862 -11.05904 -10.97212 -10.92859 -10.50895 -10.35132 -10.16924 -10.09903 -10.00430 -9.78331 -9.01546 -8.66024 -8.50657 -8.03251 -6.11825 -4.18551 0.63171 0.78760 1.33355 2.69820 3.23926 3.29693 3.31929 3.32881 3.56008 3.80037 4.03255 4.20004 4.34085 4.34965 4.54228 4.78970 4.96156 5.09396 5.21142 5.23546 5.28164 5.43838 5.47852 5.51325 5.59735 5.78824 5.82208 5.87040 5.98300 6.13811 6.22561 6.36439 6.38895 6.71449 6.75600 7.00960 7.30179 7.39950 7.41286 7.47317 7.70715 7.86029 8.16195 8.86574 9.47309 10.95987 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.009860 B = 0.003927 C = 0.003299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2839.024832 B = 7128.437790 C = 8486.550891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.132 3.868 3 N -0.991 5.991 4 C 0.243 3.757 5 C -0.540 4.540 6 H 0.065 0.935 7 C 0.066 3.934 8 N -0.887 5.887 9 Si 0.890 3.110 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.272 1.272 13 S 2.786 3.214 14 O -1.000 7.000 15 O -0.979 6.979 16 N -1.130 6.130 17 C 0.119 3.881 18 C 0.065 3.935 19 O -0.291 6.291 20 C 0.305 3.695 21 N -0.515 5.515 22 C 0.130 3.870 23 C -0.190 4.190 24 C -0.077 4.077 25 C 0.029 3.971 26 F -0.121 7.121 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.060 0.940 30 H 0.080 0.920 31 H 0.060 0.940 32 H 0.034 0.966 33 H 0.056 0.944 34 H 0.264 0.736 35 H 0.409 0.591 36 H 0.104 0.896 37 H 0.098 0.902 38 H 0.075 0.925 39 H 0.083 0.917 40 H 0.167 0.833 41 H 0.146 0.854 42 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.110 -8.008 13.601 19.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.006 3.994 3 N -0.833 5.833 4 C 0.121 3.879 5 C -0.580 4.580 6 H 0.083 0.917 7 C -0.137 4.137 8 N -0.525 5.525 9 Si 0.717 3.283 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.197 1.197 13 S 2.793 3.207 14 O -0.984 6.984 15 O -0.963 6.963 16 N -0.889 5.889 17 C -0.007 4.007 18 C -0.011 4.011 19 O -0.197 6.197 20 C 0.124 3.876 21 N -0.239 5.239 22 C -0.025 4.025 23 C -0.210 4.210 24 C -0.103 4.103 25 C 0.007 3.993 26 F -0.100 7.100 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.098 0.902 31 H 0.078 0.922 32 H 0.052 0.948 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.241 0.759 36 H 0.122 0.878 37 H 0.116 0.884 38 H 0.093 0.907 39 H 0.101 0.899 40 H 0.184 0.816 41 H 0.164 0.836 42 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 11.034 -6.453 13.455 18.559 hybrid contribution 1.424 -1.625 -0.447 2.206 sum 12.458 -8.078 13.008 19.740 Atomic orbital electron populations 1.22213 0.96974 1.01306 1.02447 1.20945 0.93592 0.82828 1.02076 1.57708 1.78564 1.22990 1.24037 1.19219 0.97213 0.92559 0.78949 1.21556 1.07347 1.20704 1.08357 0.91732 1.24940 0.97034 0.94729 0.97016 1.69932 1.37963 1.24198 1.20410 0.86641 0.83596 0.78176 0.79876 1.20620 1.21116 1.19708 1.01733 0.72569 0.73701 0.72654 1.93550 1.65401 1.79768 1.59656 1.93574 1.86550 1.30923 1.85227 1.55966 1.25093 1.69993 1.37824 1.21560 0.82714 1.02487 0.93967 1.23074 0.98510 0.78004 1.01527 1.86375 1.34314 1.28665 1.70349 1.20002 0.87595 0.88517 0.91517 1.67522 1.05059 1.35991 1.15346 1.22547 0.91919 0.95805 0.92268 1.21898 1.01647 0.93062 1.04397 1.21527 0.91414 1.01900 0.95434 1.17690 0.91742 0.84197 1.05717 1.91558 1.66844 1.63022 1.88580 0.92471 0.92495 0.92121 0.90157 0.92152 0.94772 0.92583 0.92571 0.75922 0.87843 0.88370 0.90711 0.89908 0.81613 0.83621 0.82974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.77 10.24 37.16 0.38 -2.39 16 2 C 0.13 2.35 6.02 -4.04 -0.02 2.32 16 3 N -0.99 -20.37 2.84 -115.66 -0.33 -20.70 16 4 C 0.24 5.91 5.46 -5.19 -0.03 5.88 16 5 C -0.54 -13.67 8.51 -34.44 -0.29 -13.96 16 6 H 0.06 1.57 6.47 -52.48 -0.34 1.24 16 7 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 8 N -0.89 -24.91 13.29 55.43 0.74 -24.17 16 9 Si 0.89 20.30 29.54 -169.99 -5.02 15.28 16 10 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 12 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 13 S 2.79 55.42 6.07 -107.50 -0.65 54.77 16 14 O -1.00 -20.67 17.17 -57.17 -0.98 -21.65 16 15 O -0.98 -22.61 16.01 -57.17 -0.92 -23.52 16 16 N -1.13 -18.79 6.02 -10.61 -0.06 -18.86 16 17 C 0.12 1.97 6.60 -4.04 -0.03 1.94 16 18 C 0.07 0.91 5.50 37.16 0.20 1.12 16 19 O -0.29 -4.37 9.80 -18.90 -0.19 -4.56 16 20 C 0.30 4.08 7.50 -17.07 -0.13 3.95 16 21 N -0.52 -6.09 9.22 -13.27 -0.12 -6.22 16 22 C 0.13 1.07 11.17 -17.56 -0.20 0.87 16 23 C -0.19 -1.27 10.10 -39.44 -0.40 -1.67 16 24 C -0.08 -0.63 10.16 -39.25 -0.40 -1.03 16 25 C 0.03 0.35 7.35 -39.14 -0.29 0.06 16 26 F -0.12 -1.65 17.13 2.25 0.04 -1.61 16 27 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.06 0.96 7.97 -51.92 -0.41 0.55 16 29 H 0.06 1.02 8.10 -51.93 -0.42 0.60 16 30 H 0.08 1.43 8.09 -51.93 -0.42 1.01 16 31 H 0.06 0.97 7.78 -51.93 -0.40 0.56 16 32 H 0.03 0.87 8.10 -51.93 -0.42 0.45 16 33 H 0.06 1.51 6.77 -51.93 -0.35 1.16 16 34 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 35 H 0.41 5.96 8.51 -34.48 -0.29 5.67 16 36 H 0.10 1.77 7.75 -51.93 -0.40 1.36 16 37 H 0.10 1.82 5.86 -51.93 -0.30 1.52 16 38 H 0.07 0.96 8.10 -51.93 -0.42 0.54 16 39 H 0.08 1.10 8.10 -51.92 -0.42 0.68 16 40 H 0.17 0.82 8.06 -52.48 -0.42 0.40 16 41 H 0.15 0.49 8.06 -52.49 -0.42 0.07 16 42 H 0.15 0.84 8.06 -52.49 -0.42 0.42 16 LS Contribution 374.70 15.07 5.65 5.65 Total: -1.00 -32.77 374.70 -8.58 -41.35 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -5.44 Total: 5.49 kcal Atomic # 6 Polarization: 0.05 SS G_CDS: -1.29 Total: -1.25 kcal Atomic # 7 Polarization: -70.17 SS G_CDS: 0.22 Total: -69.95 kcal Atomic # 8 Polarization: -47.65 SS G_CDS: -2.08 Total: -49.73 kcal Atomic # 9 Polarization: -1.65 SS G_CDS: 0.04 Total: -1.61 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Atomic # 16 Polarization: 55.42 SS G_CDS: -0.65 Total: 54.77 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.77 -8.58 -41.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336953935.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.345 kcal (2) G-P(sol) polarization free energy of solvation -32.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds