Wall clock time and date at job start Wed Apr 1 2020 03:59:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46499 * 109.47012 * 2 1 4 4 C 1.46509 * 119.99869 * 275.00127 * 3 2 1 5 5 C 1.50697 * 109.46949 * 280.11979 * 4 3 2 6 6 H 1.08004 * 119.99923 * 4.11627 * 5 4 3 7 7 C 1.37874 * 120.00145 * 184.11406 * 5 4 3 8 8 N 1.31517 * 120.00067 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00127 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47088 * 90.00424 * 9 7 5 11 11 H 1.48500 * 109.47086 * 209.99971 * 9 7 5 12 12 H 1.48499 * 109.47320 * 330.00243 * 9 7 5 13 13 S 1.65596 * 120.00582 * 94.99885 * 3 2 1 14 14 O 1.42102 * 106.39814 * 330.09135 * 13 3 2 15 15 O 1.42095 * 106.40888 * 197.16773 * 13 3 2 16 16 N 1.65605 * 107.21780 * 83.62690 * 13 3 2 17 17 C 1.46505 * 119.99674 * 65.42430 * 16 13 3 18 18 C 1.52996 * 109.46660 * 165.64278 * 17 16 13 19 19 O 1.42894 * 109.47488 * 65.00158 * 18 17 16 20 20 C 1.35733 * 117.00339 * 179.97438 * 19 18 17 21 21 N 1.32231 * 119.69352 * 0.02562 * 20 19 18 22 22 C 1.31958 * 121.67024 * 179.97438 * 21 20 19 23 23 C 1.38064 * 120.88344 * 0.02589 * 22 21 20 24 24 C 1.38801 * 119.30411 * 359.97416 * 23 22 21 25 25 C 1.38572 * 118.46261 * 359.97438 * 24 23 22 26 26 F 1.35107 * 120.46119 * 180.02562 * 25 24 23 27 27 H 1.08998 * 109.46920 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.47084 * 300.00355 * 1 2 3 29 29 H 1.09005 * 109.47137 * 59.99993 * 1 2 3 30 30 H 1.08993 * 109.46722 * 239.99989 * 2 1 3 31 31 H 1.08995 * 109.46892 * 119.99515 * 2 1 3 32 32 H 1.09002 * 109.47228 * 40.12041 * 4 3 2 33 33 H 1.08995 * 109.47265 * 160.11908 * 4 3 2 34 34 H 0.96996 * 120.00517 * 179.97438 * 8 7 5 35 35 H 0.96996 * 120.00379 * 245.42902 * 16 13 3 36 36 H 1.08994 * 109.47010 * 45.63797 * 17 16 13 37 37 H 1.08998 * 109.47049 * 285.63665 * 17 16 13 38 38 H 1.09001 * 109.47381 * 304.99750 * 18 17 16 39 39 H 1.09007 * 109.47035 * 184.99865 * 18 17 16 40 40 H 1.08003 * 119.56313 * 179.97438 * 22 21 20 41 41 H 1.07997 * 120.35080 * 179.97438 * 23 22 21 42 42 H 1.07999 * 120.76720 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1582 2.1087 -1.2640 5 6 3.4375 1.6935 -1.9436 6 1 4.0486 0.9134 -1.5141 7 6 3.8279 2.3094 -3.1137 8 7 3.0841 3.2597 -3.6365 9 14 5.4141 1.7952 -3.9558 10 1 5.1311 0.7002 -4.9182 11 1 5.9880 2.9564 -4.6819 12 1 6.3841 1.3200 -2.9367 13 16 2.4122 2.1203 1.4286 14 8 1.5766 1.5432 2.4226 15 8 2.4522 3.5153 1.1611 16 7 3.9618 1.6712 1.8019 17 6 5.0730 2.0920 0.9449 18 6 6.3966 1.8659 1.6783 19 8 6.5911 0.4661 1.8894 20 6 7.7267 0.0917 2.5317 21 7 8.5887 1.0125 2.9287 22 6 9.7043 0.6924 3.5566 23 6 10.0140 -0.6264 3.8233 24 6 9.1363 -1.6246 3.4236 25 6 7.9726 -1.2569 2.7673 26 9 7.0896 -2.1953 2.3609 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5137 0.8900 32 1 1.3118 1.8788 -1.9112 33 1 2.1834 3.1802 -1.0657 34 1 3.3588 3.6933 -4.4595 35 1 4.1338 1.1295 2.5880 36 1 4.9665 3.1500 0.7052 37 1 5.0633 1.5082 0.0246 38 1 6.3713 2.3783 2.6401 39 1 7.2166 2.2602 1.0780 40 1 10.3846 1.4723 3.8654 41 1 10.9296 -0.8787 4.3374 42 1 9.3548 -2.6638 3.6204 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336953935.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:59:54 Heat of formation + Delta-G solvation = -147.394899 kcal Electronic energy + Delta-G solvation = -29190.619233 eV Core-core repulsion = 24825.698388 eV Total energy + Delta-G solvation = -4364.920845 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.115 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.91669 -41.53587 -39.29032 -38.32523 -37.68559 -36.90104 -36.23324 -34.66804 -33.32595 -31.55223 -31.51148 -29.75229 -28.48288 -25.28731 -24.94230 -24.29210 -23.38132 -23.17200 -20.47412 -19.66643 -18.88888 -18.68138 -18.52751 -18.27773 -18.11837 -17.69983 -17.22905 -16.75657 -16.40010 -16.23006 -16.03290 -15.51537 -15.14712 -14.89181 -14.75823 -14.65757 -14.29461 -14.16662 -13.87597 -13.75281 -13.72815 -13.57313 -13.33895 -13.26974 -13.16221 -13.02067 -12.71157 -12.69563 -12.47611 -12.29022 -12.11986 -12.04256 -11.72339 -11.57533 -10.88883 -10.84186 -10.57107 -10.46060 -9.78368 -9.46257 -8.14796 -6.27719 -0.29991 -0.08203 0.09628 1.42963 1.44766 1.54001 1.77795 1.99080 2.43147 2.58905 2.60387 2.99964 3.17270 3.32116 3.42904 3.67841 3.81614 3.96824 3.97870 4.07729 4.20091 4.33349 4.42922 4.45389 4.54517 4.60329 4.69679 4.77710 4.92179 4.98090 5.00245 5.01258 5.16747 5.29941 5.41803 5.42994 5.54532 5.79512 5.88761 6.08837 6.13672 6.15725 6.68129 6.84521 7.42020 8.93492 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.009860 B = 0.003927 C = 0.003299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2839.024832 B = 7128.437790 C = 8486.550891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.123 3.877 3 N -0.995 5.995 4 C 0.258 3.742 5 C -0.538 4.538 6 H 0.073 0.927 7 C 0.016 3.984 8 N -0.926 5.926 9 Si 0.951 3.049 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.261 1.261 13 S 2.800 3.200 14 O -1.005 7.005 15 O -1.013 7.013 16 N -1.114 6.114 17 C 0.119 3.881 18 C 0.077 3.923 19 O -0.314 6.314 20 C 0.272 3.728 21 N -0.536 5.536 22 C 0.125 3.875 23 C -0.167 4.167 24 C -0.069 4.069 25 C -0.001 4.001 26 F -0.140 7.140 27 H 0.089 0.911 28 H 0.048 0.952 29 H 0.048 0.952 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.017 0.983 33 H 0.025 0.975 34 H 0.265 0.735 35 H 0.420 0.580 36 H 0.094 0.906 37 H 0.079 0.921 38 H 0.086 0.914 39 H 0.089 0.911 40 H 0.201 0.799 41 H 0.191 0.809 42 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.038 -9.763 15.207 23.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.003 4.003 3 N -0.837 5.837 4 C 0.134 3.866 5 C -0.577 4.577 6 H 0.091 0.909 7 C -0.183 4.183 8 N -0.566 5.566 9 Si 0.777 3.223 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.185 1.185 13 S 2.808 3.192 14 O -0.989 6.989 15 O -0.997 6.997 16 N -0.877 5.877 17 C -0.007 4.007 18 C 0.001 3.999 19 O -0.222 6.222 20 C 0.093 3.907 21 N -0.260 5.260 22 C -0.031 4.031 23 C -0.187 4.187 24 C -0.094 4.094 25 C -0.023 4.023 26 F -0.119 7.119 27 H 0.108 0.892 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.098 0.902 31 H 0.099 0.901 32 H 0.035 0.965 33 H 0.043 0.957 34 H 0.074 0.926 35 H 0.255 0.745 36 H 0.112 0.888 37 H 0.097 0.903 38 H 0.104 0.896 39 H 0.107 0.893 40 H 0.217 0.783 41 H 0.208 0.792 42 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 13.961 -8.243 15.095 22.152 hybrid contribution 0.626 -1.127 -0.805 1.520 sum 14.588 -9.370 14.290 22.468 Atomic orbital electron populations 1.22188 0.95768 1.03171 1.01465 1.21213 0.94713 0.81297 1.03060 1.57621 1.79240 1.24050 1.22739 1.18774 0.96453 0.91233 0.80094 1.21801 1.07405 1.20344 1.08128 0.90893 1.25719 1.00066 0.94729 0.97821 1.70061 1.39881 1.25643 1.21021 0.85658 0.80049 0.77697 0.78937 1.20242 1.21134 1.18487 1.01137 0.72969 0.72860 0.72204 1.93533 1.66159 1.79638 1.59587 1.93531 1.87211 1.33271 1.85650 1.55602 1.23966 1.69927 1.38176 1.21494 0.84050 1.01518 0.93626 1.22859 0.96800 0.78529 1.01740 1.86299 1.35941 1.28424 1.71519 1.20188 0.87878 0.89420 0.93263 1.67513 1.06129 1.36137 1.16208 1.23287 0.91068 0.97780 0.90948 1.22409 1.02194 0.91830 1.02243 1.21974 0.89856 1.03923 0.93685 1.18115 0.93077 0.83545 1.07608 1.91500 1.67769 1.63501 1.89111 0.89206 0.93273 0.93259 0.90186 0.90097 0.96466 0.95660 0.92595 0.74492 0.88753 0.90334 0.89612 0.89301 0.78278 0.79223 0.80094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.31 10.24 71.98 0.74 -4.58 16 2 C 0.12 4.30 6.02 86.38 0.52 4.82 16 3 N -1.00 -41.65 2.84 -519.84 -1.48 -43.13 16 4 C 0.26 13.02 5.46 85.63 0.47 13.49 16 5 C -0.54 -27.66 8.51 25.60 0.22 -27.45 16 6 H 0.07 3.58 6.47 -2.91 -0.02 3.56 16 7 C 0.02 0.88 5.46 84.65 0.46 1.34 16 8 N -0.93 -53.35 13.29 21.45 0.28 -53.06 16 9 Si 0.95 41.86 29.54 68.60 2.03 43.88 16 10 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 11 H -0.29 -12.51 7.11 99.48 0.71 -11.80 16 12 H -0.26 -10.89 7.11 99.48 0.71 -10.19 16 13 S 2.80 113.10 6.07 -56.49 -0.34 112.75 16 14 O -1.01 -41.28 17.17 -128.00 -2.20 -43.48 16 15 O -1.01 -48.29 16.01 -128.00 -2.05 -50.34 16 16 N -1.11 -37.31 6.02 -187.49 -1.13 -38.44 16 17 C 0.12 4.02 6.60 86.38 0.57 4.59 16 18 C 0.08 2.16 5.50 71.98 0.40 2.56 16 19 O -0.31 -9.50 9.80 -90.56 -0.89 -10.39 16 20 C 0.27 7.12 7.50 84.84 0.64 7.76 16 21 N -0.54 -11.80 9.22 -308.75 -2.85 -14.65 16 22 C 0.12 1.61 11.17 84.63 0.95 2.56 16 23 C -0.17 -1.48 10.10 22.36 0.23 -1.26 16 24 C -0.07 -0.92 10.16 22.48 0.23 -0.69 16 25 C 0.00 -0.03 7.35 22.55 0.17 0.14 16 26 F -0.14 -3.81 17.13 44.97 0.77 -3.04 16 27 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 28 H 0.05 1.63 7.97 -2.38 -0.02 1.61 16 29 H 0.05 1.66 8.10 -2.38 -0.02 1.64 16 30 H 0.08 2.81 8.09 -2.39 -0.02 2.79 16 31 H 0.08 2.50 7.78 -2.39 -0.02 2.48 16 32 H 0.02 0.92 8.10 -2.39 -0.02 0.90 16 33 H 0.03 1.43 6.77 -2.39 -0.02 1.42 16 34 H 0.27 14.48 8.31 -92.71 -0.77 13.71 16 35 H 0.42 12.16 8.51 -96.74 -0.82 11.33 16 36 H 0.09 3.34 7.75 -2.39 -0.02 3.32 16 37 H 0.08 2.97 5.86 -2.39 -0.01 2.96 16 38 H 0.09 2.17 8.10 -2.39 -0.02 2.15 16 39 H 0.09 2.35 8.10 -2.38 -0.02 2.33 16 40 H 0.20 1.08 8.06 -2.91 -0.02 1.06 16 41 H 0.19 0.04 8.06 -2.91 -0.02 0.02 16 42 H 0.18 1.28 8.06 -2.91 -0.02 1.25 16 Total: -1.00 -73.08 374.70 -2.04 -75.12 By element: Atomic # 1 Polarization: 21.25 SS G_CDS: 0.24 Total: 21.49 kcal Atomic # 6 Polarization: -2.29 SS G_CDS: 5.57 Total: 3.28 kcal Atomic # 7 Polarization: -144.11 SS G_CDS: -5.17 Total: -149.28 kcal Atomic # 8 Polarization: -99.07 SS G_CDS: -5.13 Total: -104.20 kcal Atomic # 9 Polarization: -3.81 SS G_CDS: 0.77 Total: -3.04 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 2.03 Total: 43.88 kcal Atomic # 16 Polarization: 113.10 SS G_CDS: -0.34 Total: 112.75 kcal Total: -73.08 -2.04 -75.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336953935.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.279 kcal (2) G-P(sol) polarization free energy of solvation -73.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds