Wall clock time and date at job start Wed Apr 1 2020 04:35:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34227 * 117.00047 * 2 1 4 4 O 1.20826 * 119.99656 * 359.97438 * 3 2 1 5 5 C 1.50693 * 119.99887 * 180.02562 * 3 2 1 6 6 N 1.46499 * 109.47134 * 180.02562 * 5 3 2 7 7 C 1.36910 * 120.00111 * 96.66205 * 6 5 3 8 8 H 1.08007 * 119.99892 * 145.77939 * 7 6 5 9 9 C 1.39017 * 120.00051 * 325.50436 * 7 6 5 10 10 N 1.31380 * 120.00278 * 5.15764 * 9 7 6 11 11 Si 1.86802 * 120.00032 * 185.16137 * 9 7 6 12 12 H 1.48494 * 109.47584 * 90.00101 * 11 9 7 13 13 H 1.48504 * 109.47141 * 210.00183 * 11 9 7 14 14 H 1.48496 * 109.47256 * 329.99660 * 11 9 7 15 15 C 1.34774 * 119.99834 * 276.66222 * 6 5 3 16 16 O 1.21598 * 120.00431 * 354.69917 * 15 6 5 17 17 C 1.47641 * 119.99875 * 174.69885 * 15 6 5 18 18 C 1.41228 * 126.33899 * 184.46077 * 17 15 6 19 19 C 1.36674 * 105.44639 * 179.90619 * 18 17 15 20 20 C 1.47996 * 126.59162 * 180.12087 * 19 18 17 21 21 C 1.39497 * 120.11096 * 359.97438 * 20 19 18 22 22 C 1.37941 * 119.88494 * 179.72527 * 21 20 19 23 23 C 1.38562 * 120.11495 * 0.56627 * 22 21 20 24 24 F 1.35098 * 119.89287 * 179.70266 * 23 22 21 25 25 C 1.38577 * 120.22099 * 359.68703 * 23 22 21 26 26 C 1.37938 * 120.10706 * 0.03587 * 25 23 22 27 27 N 1.36380 * 106.81891 * 0.34920 * 19 18 17 28 28 H 0.97001 * 125.01093 * 179.80327 * 27 19 18 29 29 N 1.28452 * 109.98676 * 359.77166 * 27 19 18 30 30 H 1.08995 * 109.47132 * 299.99692 * 1 2 3 31 31 H 1.08998 * 109.47064 * 60.00370 * 1 2 3 32 32 H 1.09000 * 109.46964 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47597 * 60.00211 * 5 3 2 34 34 H 1.09004 * 109.47655 * 299.99662 * 5 3 2 35 35 H 0.96998 * 120.00542 * 179.97438 * 10 9 7 36 36 H 1.08002 * 127.28058 * 359.97438 * 18 17 15 37 37 H 1.07997 * 120.05595 * 359.97438 * 21 20 19 38 38 H 1.07998 * 119.94172 * 180.27501 * 22 21 20 39 39 H 1.07997 * 119.94333 * 180.02562 * 25 23 22 40 40 H 1.08001 * 120.05361 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 7 3.9817 2.6796 0.0002 7 6 4.3082 3.2963 1.1781 8 1 5.0848 4.0468 1.1976 9 6 3.6363 2.9608 2.3479 10 7 2.7599 1.9821 2.3445 11 14 3.9796 3.9015 3.9248 12 1 3.0561 5.0603 4.0211 13 1 3.7726 3.0054 5.0909 14 1 5.3832 4.3864 3.9164 15 6 4.0424 3.3650 -1.1587 16 8 3.8465 2.7936 -2.2141 17 6 4.3469 4.8096 -1.1470 18 6 4.3571 5.6719 -2.2654 19 6 4.6879 6.9031 -1.7728 20 6 4.8285 8.1552 -2.5492 21 6 4.6167 8.1513 -3.9280 22 6 4.7434 9.3222 -4.6461 23 6 5.0918 10.4985 -4.0021 24 9 5.2206 11.6414 -4.7108 25 6 5.3084 10.5066 -2.6334 26 6 5.1787 9.3422 -1.9054 27 7 4.8687 6.7550 -0.4292 28 1 5.1142 7.4678 0.1812 29 7 4.6654 5.5326 -0.0909 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 3.9557 0.7809 -0.8908 34 1 3.9565 0.7805 0.8892 35 1 2.2913 1.7477 3.1608 36 1 4.1467 5.4133 -3.2927 37 1 4.3501 7.2339 -4.4317 38 1 4.5753 9.3210 -5.7130 39 1 5.5794 11.4261 -2.1360 40 1 5.3473 9.3496 -0.8387 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348801223.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:13 Heat of formation + Delta-G solvation = -41.623693 kcal Electronic energy + Delta-G solvation = -29699.099455 eV Core-core repulsion = 25203.321242 eV Total energy + Delta-G solvation = -4495.778213 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.111 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.10376 -42.04742 -39.36049 -38.98331 -37.98782 -35.36483 -34.52996 -32.38494 -31.81511 -31.52745 -30.99831 -28.81185 -28.08375 -26.25482 -24.94524 -23.48404 -23.27075 -22.33736 -20.66294 -20.05901 -19.10689 -18.48590 -17.65340 -16.88304 -16.54961 -16.32206 -16.21577 -15.80905 -15.50480 -15.26882 -15.04637 -14.90833 -14.38587 -14.22842 -13.93000 -13.89901 -13.51984 -13.34155 -13.07723 -12.90395 -12.65050 -12.42869 -12.22260 -12.09974 -11.49142 -11.29422 -11.24216 -11.20625 -11.03812 -10.70236 -10.40513 -9.93275 -9.75891 -9.71019 -9.41049 -9.31886 -8.97094 -8.84721 -8.77500 -7.96862 -7.77657 -6.46915 -4.04146 0.61316 0.97334 2.33984 2.60266 3.14682 3.19849 3.21305 3.23917 3.54670 3.67806 3.78008 4.00391 4.12582 4.35514 4.44374 4.48640 4.58739 4.76277 4.93729 5.03767 5.09599 5.28355 5.53294 5.66372 5.73313 5.78838 5.81551 5.84110 5.90620 5.98777 6.09431 6.16928 6.27870 6.36905 6.47460 6.59334 6.69619 6.89069 7.32695 7.52152 7.54964 7.71142 8.40576 8.46507 9.03915 9.17925 9.37220 9.75828 10.62089 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.014799 B = 0.002868 C = 0.002528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.555055 B = 9760.003922 C =11073.996740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 O -0.376 6.376 3 C 0.488 3.512 4 O -0.501 6.501 5 C 0.158 3.842 6 N -0.413 5.413 7 C -0.316 4.316 8 H 0.122 0.878 9 C 0.044 3.956 10 N -0.876 5.876 11 Si 0.932 3.068 12 H -0.279 1.279 13 H -0.285 1.285 14 H -0.269 1.269 15 C 0.545 3.455 16 O -0.596 6.596 17 C 0.029 3.971 18 C -0.157 4.157 19 C 0.021 3.979 20 C -0.009 4.009 21 C -0.073 4.073 22 C -0.144 4.144 23 C 0.089 3.911 24 F -0.142 7.142 25 C -0.145 4.145 26 C -0.095 4.095 27 N -0.398 5.398 28 H 0.437 0.563 29 N -0.211 5.211 30 H 0.054 0.946 31 H 0.049 0.951 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.124 0.876 35 H 0.272 0.728 36 H 0.158 0.842 37 H 0.143 0.857 38 H 0.139 0.861 39 H 0.137 0.863 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.587 9.798 -5.972 12.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 O -0.293 6.293 3 C 0.329 3.671 4 O -0.386 6.386 5 C 0.032 3.968 6 N -0.131 5.131 7 C -0.445 4.445 8 H 0.139 0.861 9 C -0.161 4.161 10 N -0.514 5.514 11 Si 0.759 3.241 12 H -0.205 1.205 13 H -0.211 1.211 14 H -0.193 1.193 15 C 0.334 3.666 16 O -0.481 6.481 17 C -0.131 4.131 18 C -0.186 4.186 19 C -0.102 4.102 20 C -0.011 4.011 21 C -0.092 4.092 22 C -0.162 4.162 23 C 0.070 3.930 24 F -0.120 7.120 25 C -0.163 4.163 26 C -0.114 4.114 27 N -0.112 5.112 28 H 0.280 0.720 29 N -0.045 5.045 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.103 0.897 33 H 0.100 0.900 34 H 0.142 0.858 35 H 0.083 0.917 36 H 0.176 0.824 37 H 0.160 0.840 38 H 0.157 0.843 39 H 0.155 0.845 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 3.294 9.607 -5.218 11.418 hybrid contribution -0.385 1.279 0.525 1.435 sum 2.908 10.886 -4.692 12.206 Atomic orbital electron populations 1.22909 0.78826 1.01705 1.01561 1.86448 1.21555 1.35514 1.85810 1.23787 0.92190 0.80534 0.70544 1.90515 1.66465 1.36370 1.45238 1.20484 0.87278 0.85416 1.03574 1.43152 1.55766 1.07746 1.06395 1.20127 1.18890 1.21670 0.83799 0.86116 1.25452 0.94311 0.96030 1.00285 1.69548 1.25337 1.27367 1.29171 0.85847 0.78802 0.79295 0.80144 1.20474 1.21119 1.19306 1.17004 0.81935 0.83509 0.84180 1.90634 1.57238 1.68892 1.31293 1.21872 1.06192 0.95851 0.89153 1.21659 1.06421 0.90262 1.00242 1.19666 1.10716 0.94507 0.85323 1.18032 0.99818 0.90351 0.92867 1.21064 0.97494 0.98266 0.92385 1.21086 1.02603 0.91343 1.01213 1.17777 1.03007 0.82305 0.89939 1.91495 1.93570 1.48410 1.78557 1.20983 1.03385 0.99659 0.92319 1.20927 0.99306 0.91228 0.99890 1.43952 1.51982 1.09123 1.06114 0.71979 1.74319 1.15742 0.89379 1.25040 0.92737 0.93204 0.89671 0.90048 0.85781 0.91699 0.82414 0.83971 0.84273 0.84533 0.85343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.78 10.56 101.05 1.07 1.85 16 2 O -0.38 -8.14 10.57 -39.25 -0.41 -8.56 16 3 C 0.49 12.19 5.96 36.00 0.21 12.40 16 4 O -0.50 -14.09 15.38 -18.75 -0.29 -14.38 16 5 C 0.16 3.79 5.17 -5.20 -0.03 3.76 16 6 N -0.41 -10.57 2.16 -117.24 -0.25 -10.83 16 7 C -0.32 -8.01 8.15 -15.00 -0.12 -8.14 16 8 H 0.12 2.97 5.68 -52.48 -0.30 2.68 16 9 C 0.04 1.11 5.33 -17.46 -0.09 1.02 16 10 N -0.88 -22.76 8.61 55.50 0.48 -22.28 16 11 Si 0.93 19.94 29.56 -169.99 -5.02 14.91 16 12 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 13 H -0.29 -6.05 7.11 56.52 0.40 -5.65 16 14 H -0.27 -5.51 7.11 56.52 0.40 -5.10 16 15 C 0.55 13.85 7.38 -12.42 -0.09 13.76 16 16 O -0.60 -15.87 16.58 5.28 0.09 -15.78 16 17 C 0.03 0.64 6.85 -82.87 -0.57 0.07 16 18 C -0.16 -2.85 10.16 -39.01 -0.40 -3.25 16 19 C 0.02 0.32 6.98 -82.41 -0.58 -0.26 16 20 C -0.01 -0.10 5.87 -104.96 -0.62 -0.72 16 21 C -0.07 -0.78 9.57 -39.22 -0.38 -1.15 16 22 C -0.14 -1.38 10.01 -39.57 -0.40 -1.77 16 23 C 0.09 0.91 7.30 -39.34 -0.29 0.62 16 24 F -0.14 -1.51 17.26 2.25 0.04 -1.47 16 25 C -0.14 -1.33 10.01 -39.57 -0.40 -1.73 16 26 C -0.09 -0.92 9.71 -39.22 -0.38 -1.30 16 27 N -0.40 -6.16 6.80 33.31 0.23 -5.93 16 28 H 0.44 4.95 8.08 -190.45 -1.54 3.42 16 29 N -0.21 -4.30 8.91 33.36 0.30 -4.00 16 30 H 0.05 1.00 8.13 -51.93 -0.42 0.57 16 31 H 0.05 0.86 8.13 -51.93 -0.42 0.44 16 32 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.08 1.81 7.56 -51.93 -0.39 1.42 16 34 H 0.12 2.93 6.85 -51.93 -0.36 2.57 16 35 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 36 H 0.16 2.58 7.39 -52.49 -0.39 2.20 16 37 H 0.14 1.37 7.09 -52.49 -0.37 1.00 16 38 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 39 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 40 H 0.13 0.97 7.19 -52.49 -0.38 0.59 16 LS Contribution 354.82 15.07 5.35 5.35 Total: -1.00 -33.49 354.82 -7.52 -41.01 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -4.97 Total: 6.80 kcal Atomic # 6 Polarization: 18.21 SS G_CDS: -3.04 Total: 15.16 kcal Atomic # 7 Polarization: -43.79 SS G_CDS: 0.75 Total: -43.04 kcal Atomic # 8 Polarization: -38.11 SS G_CDS: -0.62 Total: -38.72 kcal Atomic # 9 Polarization: -1.51 SS G_CDS: 0.04 Total: -1.47 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.02 Total: 14.91 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -33.49 -7.52 -41.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348801223.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.616 kcal (2) G-P(sol) polarization free energy of solvation -33.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds