Wall clock time and date at job start Wed Apr 1 2020 04:35:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34227 * 117.00047 * 2 1 4 4 O 1.20826 * 119.99656 * 359.97438 * 3 2 1 5 5 C 1.50693 * 119.99887 * 180.02562 * 3 2 1 6 6 N 1.46499 * 109.47134 * 180.02562 * 5 3 2 7 7 C 1.36910 * 120.00111 * 96.66205 * 6 5 3 8 8 H 1.08007 * 119.99892 * 145.77939 * 7 6 5 9 9 C 1.39017 * 120.00051 * 325.50436 * 7 6 5 10 10 N 1.31380 * 120.00278 * 5.15764 * 9 7 6 11 11 Si 1.86802 * 120.00032 * 185.16137 * 9 7 6 12 12 H 1.48494 * 109.47584 * 90.00101 * 11 9 7 13 13 H 1.48504 * 109.47141 * 210.00183 * 11 9 7 14 14 H 1.48496 * 109.47256 * 329.99660 * 11 9 7 15 15 C 1.34774 * 119.99834 * 276.66222 * 6 5 3 16 16 O 1.21598 * 120.00431 * 354.69917 * 15 6 5 17 17 C 1.47641 * 119.99875 * 174.69885 * 15 6 5 18 18 C 1.41228 * 126.33899 * 184.46077 * 17 15 6 19 19 C 1.36674 * 105.44639 * 179.90619 * 18 17 15 20 20 C 1.47996 * 126.59162 * 180.12087 * 19 18 17 21 21 C 1.39497 * 120.11096 * 359.97438 * 20 19 18 22 22 C 1.37941 * 119.88494 * 179.72527 * 21 20 19 23 23 C 1.38562 * 120.11495 * 0.56627 * 22 21 20 24 24 F 1.35098 * 119.89287 * 179.70266 * 23 22 21 25 25 C 1.38577 * 120.22099 * 359.68703 * 23 22 21 26 26 C 1.37938 * 120.10706 * 0.03587 * 25 23 22 27 27 N 1.36380 * 106.81891 * 0.34920 * 19 18 17 28 28 H 0.97001 * 125.01093 * 179.80327 * 27 19 18 29 29 N 1.28452 * 109.98676 * 359.77166 * 27 19 18 30 30 H 1.08995 * 109.47132 * 299.99692 * 1 2 3 31 31 H 1.08998 * 109.47064 * 60.00370 * 1 2 3 32 32 H 1.09000 * 109.46964 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47597 * 60.00211 * 5 3 2 34 34 H 1.09004 * 109.47655 * 299.99662 * 5 3 2 35 35 H 0.96998 * 120.00542 * 179.97438 * 10 9 7 36 36 H 1.08002 * 127.28058 * 359.97438 * 18 17 15 37 37 H 1.07997 * 120.05595 * 359.97438 * 21 20 19 38 38 H 1.07998 * 119.94172 * 180.27501 * 22 21 20 39 39 H 1.07997 * 119.94333 * 180.02562 * 25 23 22 40 40 H 1.08001 * 120.05361 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 7 3.9817 2.6796 0.0002 7 6 4.3082 3.2963 1.1781 8 1 5.0848 4.0468 1.1976 9 6 3.6363 2.9608 2.3479 10 7 2.7599 1.9821 2.3445 11 14 3.9796 3.9015 3.9248 12 1 3.0561 5.0603 4.0211 13 1 3.7726 3.0054 5.0909 14 1 5.3832 4.3864 3.9164 15 6 4.0424 3.3650 -1.1587 16 8 3.8465 2.7936 -2.2141 17 6 4.3469 4.8096 -1.1470 18 6 4.3571 5.6719 -2.2654 19 6 4.6879 6.9031 -1.7728 20 6 4.8285 8.1552 -2.5492 21 6 4.6167 8.1513 -3.9280 22 6 4.7434 9.3222 -4.6461 23 6 5.0918 10.4985 -4.0021 24 9 5.2206 11.6414 -4.7108 25 6 5.3084 10.5066 -2.6334 26 6 5.1787 9.3422 -1.9054 27 7 4.8687 6.7550 -0.4292 28 1 5.1142 7.4678 0.1812 29 7 4.6654 5.5326 -0.0909 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 3.9557 0.7809 -0.8908 34 1 3.9565 0.7805 0.8892 35 1 2.2913 1.7477 3.1608 36 1 4.1467 5.4133 -3.2927 37 1 4.3501 7.2339 -4.4317 38 1 4.5753 9.3210 -5.7130 39 1 5.5794 11.4261 -2.1360 40 1 5.3473 9.3496 -0.8387 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348801223.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:13 Heat of formation + Delta-G solvation = -61.698543 kcal Electronic energy + Delta-G solvation = -29699.969966 eV Core-core repulsion = 25203.321242 eV Total energy + Delta-G solvation = -4496.648724 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.111 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.91013 -43.44196 -41.23400 -39.99324 -39.68816 -37.24870 -36.46886 -33.61758 -33.32412 -33.00236 -32.02870 -30.38144 -29.40300 -27.85759 -26.81742 -24.69076 -24.25085 -23.63060 -21.97462 -21.75556 -20.93896 -19.63313 -18.74640 -18.41737 -18.37801 -17.89776 -17.31600 -17.12866 -16.95971 -16.63912 -16.45657 -16.27642 -16.10553 -15.80676 -15.12763 -15.00079 -14.83913 -14.58888 -14.42597 -14.20756 -14.05845 -14.00781 -13.49173 -13.32908 -13.14177 -13.03743 -12.94326 -12.75204 -12.49386 -12.06482 -11.99308 -11.60877 -11.52565 -11.22404 -10.90926 -10.78356 -10.73650 -10.25661 -10.14954 -9.69797 -9.07127 -8.35755 -5.98720 -0.29784 0.23370 0.78183 1.34357 1.44816 1.49686 1.57910 1.79996 1.91506 2.07325 2.35323 2.63562 2.71548 2.83812 3.20727 3.22670 3.50162 3.63291 3.80757 3.89571 4.17291 4.23035 4.29244 4.37692 4.43578 4.46060 4.54825 4.61575 4.72468 4.76578 4.82235 4.90077 4.93673 5.09531 5.17034 5.37387 5.41799 5.59676 5.67737 5.81248 5.81734 6.18189 6.50866 6.96493 7.15848 7.28113 7.48687 7.85177 8.72752 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.014799 B = 0.002868 C = 0.002528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.555055 B = 9760.003922 C =11073.996740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.375 6.375 3 C 0.491 3.509 4 O -0.540 6.540 5 C 0.154 3.846 6 N -0.425 5.425 7 C -0.327 4.327 8 H 0.126 0.874 9 C 0.001 3.999 10 N -0.899 5.899 11 Si 0.994 3.006 12 H -0.286 1.286 13 H -0.282 1.282 14 H -0.252 1.252 15 C 0.533 3.467 16 O -0.623 6.623 17 C -0.009 4.009 18 C -0.182 4.182 19 C 0.059 3.941 20 C -0.034 4.034 21 C -0.073 4.073 22 C -0.145 4.145 23 C 0.087 3.913 24 F -0.144 7.144 25 C -0.143 4.143 26 C -0.085 4.085 27 N -0.377 5.377 28 H 0.456 0.544 29 N -0.234 5.234 30 H 0.043 0.957 31 H 0.049 0.951 32 H 0.135 0.865 33 H 0.091 0.909 34 H 0.124 0.876 35 H 0.270 0.730 36 H 0.166 0.834 37 H 0.147 0.853 38 H 0.159 0.841 39 H 0.162 0.838 40 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.208 12.124 -5.743 14.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.292 6.292 3 C 0.334 3.666 4 O -0.428 6.428 5 C 0.029 3.971 6 N -0.143 5.143 7 C -0.456 4.456 8 H 0.143 0.857 9 C -0.200 4.200 10 N -0.538 5.538 11 Si 0.819 3.181 12 H -0.213 1.213 13 H -0.208 1.208 14 H -0.176 1.176 15 C 0.323 3.677 16 O -0.509 6.509 17 C -0.167 4.167 18 C -0.210 4.210 19 C -0.066 4.066 20 C -0.036 4.036 21 C -0.093 4.093 22 C -0.163 4.163 23 C 0.067 3.933 24 F -0.123 7.123 25 C -0.161 4.161 26 C -0.103 4.103 27 N -0.094 5.094 28 H 0.304 0.696 29 N -0.070 5.070 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.153 0.847 33 H 0.109 0.891 34 H 0.142 0.858 35 H 0.080 0.920 36 H 0.183 0.817 37 H 0.165 0.835 38 H 0.176 0.824 39 H 0.180 0.820 40 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 3.934 11.915 -4.972 13.497 hybrid contribution -0.591 0.695 0.317 0.966 sum 3.343 12.610 -4.655 13.851 Atomic orbital electron populations 1.23273 0.76299 1.04802 1.01071 1.86416 1.23991 1.33708 1.85128 1.23885 0.92475 0.80751 0.69447 1.90480 1.67328 1.37766 1.47272 1.20550 0.87246 0.85435 1.03869 1.43357 1.55939 1.08246 1.06717 1.20363 1.19347 1.21956 0.83921 0.85707 1.26252 0.94118 0.96660 1.03020 1.69652 1.26187 1.28460 1.29527 0.84903 0.79169 0.77602 0.76469 1.21287 1.20795 1.17566 1.17544 0.81390 0.85043 0.83759 1.90574 1.58427 1.69968 1.31967 1.21628 1.08987 0.94833 0.91245 1.21779 1.08348 0.90881 1.00000 1.19876 1.07216 0.94730 0.84792 1.18013 1.02763 0.89654 0.93186 1.21194 0.96964 0.98973 0.92134 1.21264 1.02100 0.90747 1.02230 1.18035 1.02454 0.82263 0.90506 1.91496 1.93520 1.48570 1.78714 1.21248 1.02523 1.00416 0.91963 1.21178 0.97659 0.90351 1.01151 1.43920 1.50270 1.08314 1.06912 0.69620 1.74124 1.16776 0.91025 1.25092 0.93783 0.93197 0.84746 0.89095 0.85831 0.92049 0.81687 0.83535 0.82384 0.82050 0.82924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.35 10.56 113.37 1.20 2.55 16 2 O -0.38 -16.41 10.57 -51.39 -0.54 -16.96 16 3 C 0.49 25.25 5.96 71.23 0.42 25.67 16 4 O -0.54 -31.43 15.38 21.96 0.34 -31.09 16 5 C 0.15 7.69 5.17 85.63 0.44 8.13 16 6 N -0.43 -22.55 2.16 -643.11 -1.39 -23.95 16 7 C -0.33 -16.96 8.15 84.09 0.69 -16.28 16 8 H 0.13 6.23 5.68 -2.91 -0.02 6.21 16 9 C 0.00 0.06 5.33 84.95 0.45 0.51 16 10 N -0.90 -47.68 8.61 21.68 0.19 -47.49 16 11 Si 0.99 40.84 29.56 68.60 2.03 42.87 16 12 H -0.29 -12.05 7.11 99.48 0.71 -11.34 16 13 H -0.28 -11.35 7.11 99.48 0.71 -10.64 16 14 H -0.25 -9.58 7.11 99.48 0.71 -8.87 16 15 C 0.53 28.16 7.38 86.73 0.64 28.80 16 16 O -0.62 -34.60 16.58 -4.03 -0.07 -34.67 16 17 C -0.01 -0.39 6.85 42.35 0.29 -0.10 16 18 C -0.18 -6.65 10.16 22.64 0.23 -6.42 16 19 C 0.06 1.68 6.98 40.66 0.28 1.97 16 20 C -0.03 -0.73 5.87 -20.08 -0.12 -0.85 16 21 C -0.07 -1.41 9.57 22.50 0.22 -1.20 16 22 C -0.14 -2.40 10.01 22.28 0.22 -2.18 16 23 C 0.09 1.50 7.30 22.43 0.16 1.66 16 24 F -0.14 -2.67 17.26 44.97 0.78 -1.89 16 25 C -0.14 -2.10 10.01 22.28 0.22 -1.88 16 26 C -0.08 -1.35 9.71 22.50 0.22 -1.13 16 27 N -0.38 -11.12 6.80 -48.52 -0.33 -11.45 16 28 H 0.46 9.16 8.08 -220.00 -1.78 7.38 16 29 N -0.23 -9.56 8.91 -48.36 -0.43 -9.99 16 30 H 0.04 1.61 8.13 -2.39 -0.02 1.59 16 31 H 0.05 1.72 8.13 -2.39 -0.02 1.70 16 32 H 0.13 3.27 8.14 -2.39 -0.02 3.25 16 33 H 0.09 4.24 7.56 -2.39 -0.02 4.22 16 34 H 0.12 6.07 6.85 -2.38 -0.02 6.05 16 35 H 0.27 13.81 8.31 -92.71 -0.77 13.04 16 36 H 0.17 5.54 7.39 -2.91 -0.02 5.52 16 37 H 0.15 2.64 7.09 -2.91 -0.02 2.62 16 38 H 0.16 1.96 8.06 -2.91 -0.02 1.93 16 39 H 0.16 1.57 8.06 -2.91 -0.02 1.55 16 40 H 0.15 1.63 7.19 -2.91 -0.02 1.61 16 Total: -1.00 -75.04 354.82 5.49 -69.55 By element: Atomic # 1 Polarization: 26.46 SS G_CDS: -0.65 Total: 25.81 kcal Atomic # 6 Polarization: 33.69 SS G_CDS: 5.57 Total: 39.26 kcal Atomic # 7 Polarization: -90.91 SS G_CDS: -1.97 Total: -92.88 kcal Atomic # 8 Polarization: -82.45 SS G_CDS: -0.27 Total: -82.72 kcal Atomic # 9 Polarization: -2.67 SS G_CDS: 0.78 Total: -1.89 kcal Atomic # 14 Polarization: 40.84 SS G_CDS: 2.03 Total: 42.87 kcal Total: -75.04 5.49 -69.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348801223.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.853 kcal (2) G-P(sol) polarization free energy of solvation -75.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds