Wall clock time and date at job start Wed Apr 1 2020 04:35:13
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.45203 * 1
3 3 C 1.34227 * 117.00047 * 2 1
4 4 O 1.20826 * 119.99656 * 359.97438 * 3 2 1
5 5 C 1.50693 * 119.99887 * 180.02562 * 3 2 1
6 6 N 1.46499 * 109.47134 * 180.02562 * 5 3 2
7 7 C 1.36910 * 120.00111 * 96.66205 * 6 5 3
8 8 H 1.08007 * 119.99892 * 145.77939 * 7 6 5
9 9 C 1.39017 * 120.00051 * 325.50436 * 7 6 5
10 10 N 1.31380 * 120.00278 * 5.15764 * 9 7 6
11 11 Si 1.86802 * 120.00032 * 185.16137 * 9 7 6
12 12 H 1.48494 * 109.47584 * 90.00101 * 11 9 7
13 13 H 1.48504 * 109.47141 * 210.00183 * 11 9 7
14 14 H 1.48496 * 109.47256 * 329.99660 * 11 9 7
15 15 C 1.34774 * 119.99834 * 276.66222 * 6 5 3
16 16 O 1.21598 * 120.00431 * 354.69917 * 15 6 5
17 17 C 1.47641 * 119.99875 * 174.69885 * 15 6 5
18 18 C 1.41228 * 126.33899 * 184.46077 * 17 15 6
19 19 C 1.36674 * 105.44639 * 179.90619 * 18 17 15
20 20 C 1.47996 * 126.59162 * 180.12087 * 19 18 17
21 21 C 1.39497 * 120.11096 * 359.97438 * 20 19 18
22 22 C 1.37941 * 119.88494 * 179.72527 * 21 20 19
23 23 C 1.38562 * 120.11495 * 0.56627 * 22 21 20
24 24 F 1.35098 * 119.89287 * 179.70266 * 23 22 21
25 25 C 1.38577 * 120.22099 * 359.68703 * 23 22 21
26 26 C 1.37938 * 120.10706 * 0.03587 * 25 23 22
27 27 N 1.36380 * 106.81891 * 0.34920 * 19 18 17
28 28 H 0.97001 * 125.01093 * 179.80327 * 27 19 18
29 29 N 1.28452 * 109.98676 * 359.77166 * 27 19 18
30 30 H 1.08995 * 109.47132 * 299.99692 * 1 2 3
31 31 H 1.08998 * 109.47064 * 60.00370 * 1 2 3
32 32 H 1.09000 * 109.46964 * 180.02562 * 1 2 3
33 33 H 1.08997 * 109.47597 * 60.00211 * 5 3 2
34 34 H 1.09004 * 109.47655 * 299.99662 * 5 3 2
35 35 H 0.96998 * 120.00542 * 179.97438 * 10 9 7
36 36 H 1.08002 * 127.28058 * 359.97438 * 18 17 15
37 37 H 1.07997 * 120.05595 * 359.97438 * 21 20 19
38 38 H 1.07998 * 119.94172 * 180.27501 * 22 21 20
39 39 H 1.07997 * 119.94333 * 180.02562 * 25 23 22
40 40 H 1.08001 * 120.05361 * 180.02562 * 26 25 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4520 0.0000 0.0000
3 6 2.0614 1.1960 0.0000
4 8 1.4033 2.2093 -0.0005
5 6 3.5663 1.2748 -0.0006
6 7 3.9817 2.6796 0.0002
7 6 4.3082 3.2963 1.1781
8 1 5.0848 4.0468 1.1976
9 6 3.6363 2.9608 2.3479
10 7 2.7599 1.9821 2.3445
11 14 3.9796 3.9015 3.9248
12 1 3.0561 5.0603 4.0211
13 1 3.7726 3.0054 5.0909
14 1 5.3832 4.3864 3.9164
15 6 4.0424 3.3650 -1.1587
16 8 3.8465 2.7936 -2.2141
17 6 4.3469 4.8096 -1.1470
18 6 4.3571 5.6719 -2.2654
19 6 4.6879 6.9031 -1.7728
20 6 4.8285 8.1552 -2.5492
21 6 4.6167 8.1513 -3.9280
22 6 4.7434 9.3222 -4.6461
23 6 5.0918 10.4985 -4.0021
24 9 5.2206 11.6414 -4.7108
25 6 5.3084 10.5066 -2.6334
26 6 5.1787 9.3422 -1.9054
27 7 4.8687 6.7550 -0.4292
28 1 5.1142 7.4678 0.1812
29 7 4.6654 5.5326 -0.0909
30 1 -0.3633 0.5138 0.8900
31 1 -0.3633 0.5138 -0.8900
32 1 -0.3633 -1.0277 0.0005
33 1 3.9557 0.7809 -0.8908
34 1 3.9565 0.7805 0.8892
35 1 2.2913 1.7477 3.1608
36 1 4.1467 5.4133 -3.2927
37 1 4.3501 7.2339 -4.4317
38 1 4.5753 9.3210 -5.7130
39 1 5.5794 11.4261 -2.1360
40 1 5.3473 9.3496 -0.8387
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000348801223.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:35:13
Heat of formation + Delta-G solvation = -61.698543 kcal
Electronic energy + Delta-G solvation = -29699.969966 eV
Core-core repulsion = 25203.321242 eV
Total energy + Delta-G solvation = -4496.648724 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 347.111 amu
Computer time = 0.72 seconds
Orbital eigenvalues (eV)
-49.91013 -43.44196 -41.23400 -39.99324 -39.68816 -37.24870 -36.46886 -33.61758
-33.32412 -33.00236 -32.02870 -30.38144 -29.40300 -27.85759 -26.81742 -24.69076
-24.25085 -23.63060 -21.97462 -21.75556 -20.93896 -19.63313 -18.74640 -18.41737
-18.37801 -17.89776 -17.31600 -17.12866 -16.95971 -16.63912 -16.45657 -16.27642
-16.10553 -15.80676 -15.12763 -15.00079 -14.83913 -14.58888 -14.42597 -14.20756
-14.05845 -14.00781 -13.49173 -13.32908 -13.14177 -13.03743 -12.94326 -12.75204
-12.49386 -12.06482 -11.99308 -11.60877 -11.52565 -11.22404 -10.90926 -10.78356
-10.73650 -10.25661 -10.14954 -9.69797 -9.07127 -8.35755 -5.98720 -0.29784
0.23370 0.78183 1.34357 1.44816 1.49686 1.57910 1.79996 1.91506
2.07325 2.35323 2.63562 2.71548 2.83812 3.20727 3.22670 3.50162
3.63291 3.80757 3.89571 4.17291 4.23035 4.29244 4.37692 4.43578
4.46060 4.54825 4.61575 4.72468 4.76578 4.82235 4.90077 4.93673
5.09531 5.17034 5.37387 5.41799 5.59676 5.67737 5.81248 5.81734
6.18189 6.50866 6.96493 7.15848 7.28113 7.48687 7.85177 8.72752
Molecular weight = 347.11amu
Principal moments of inertia in cm(-1)
A = 0.014799 B = 0.002868 C = 0.002528
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1891.555055 B = 9760.003922 C =11073.996740
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.039 3.961
2 O -0.375 6.375
3 C 0.491 3.509
4 O -0.540 6.540
5 C 0.154 3.846
6 N -0.425 5.425
7 C -0.327 4.327
8 H 0.126 0.874
9 C 0.001 3.999
10 N -0.899 5.899
11 Si 0.994 3.006
12 H -0.286 1.286
13 H -0.282 1.282
14 H -0.252 1.252
15 C 0.533 3.467
16 O -0.623 6.623
17 C -0.009 4.009
18 C -0.182 4.182
19 C 0.059 3.941
20 C -0.034 4.034
21 C -0.073 4.073
22 C -0.145 4.145
23 C 0.087 3.913
24 F -0.144 7.144
25 C -0.143 4.143
26 C -0.085 4.085
27 N -0.377 5.377
28 H 0.456 0.544
29 N -0.234 5.234
30 H 0.043 0.957
31 H 0.049 0.951
32 H 0.135 0.865
33 H 0.091 0.909
34 H 0.124 0.876
35 H 0.270 0.730
36 H 0.166 0.834
37 H 0.147 0.853
38 H 0.159 0.841
39 H 0.162 0.838
40 H 0.153 0.847
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.208 12.124 -5.743 14.060
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.054 4.054
2 O -0.292 6.292
3 C 0.334 3.666
4 O -0.428 6.428
5 C 0.029 3.971
6 N -0.143 5.143
7 C -0.456 4.456
8 H 0.143 0.857
9 C -0.200 4.200
10 N -0.538 5.538
11 Si 0.819 3.181
12 H -0.213 1.213
13 H -0.208 1.208
14 H -0.176 1.176
15 C 0.323 3.677
16 O -0.509 6.509
17 C -0.167 4.167
18 C -0.210 4.210
19 C -0.066 4.066
20 C -0.036 4.036
21 C -0.093 4.093
22 C -0.163 4.163
23 C 0.067 3.933
24 F -0.123 7.123
25 C -0.161 4.161
26 C -0.103 4.103
27 N -0.094 5.094
28 H 0.304 0.696
29 N -0.070 5.070
30 H 0.062 0.938
31 H 0.068 0.932
32 H 0.153 0.847
33 H 0.109 0.891
34 H 0.142 0.858
35 H 0.080 0.920
36 H 0.183 0.817
37 H 0.165 0.835
38 H 0.176 0.824
39 H 0.180 0.820
40 H 0.171 0.829
Dipole moment (debyes) X Y Z Total
from point charges 3.934 11.915 -4.972 13.497
hybrid contribution -0.591 0.695 0.317 0.966
sum 3.343 12.610 -4.655 13.851
Atomic orbital electron populations
1.23273 0.76299 1.04802 1.01071 1.86416 1.23991 1.33708 1.85128
1.23885 0.92475 0.80751 0.69447 1.90480 1.67328 1.37766 1.47272
1.20550 0.87246 0.85435 1.03869 1.43357 1.55939 1.08246 1.06717
1.20363 1.19347 1.21956 0.83921 0.85707 1.26252 0.94118 0.96660
1.03020 1.69652 1.26187 1.28460 1.29527 0.84903 0.79169 0.77602
0.76469 1.21287 1.20795 1.17566 1.17544 0.81390 0.85043 0.83759
1.90574 1.58427 1.69968 1.31967 1.21628 1.08987 0.94833 0.91245
1.21779 1.08348 0.90881 1.00000 1.19876 1.07216 0.94730 0.84792
1.18013 1.02763 0.89654 0.93186 1.21194 0.96964 0.98973 0.92134
1.21264 1.02100 0.90747 1.02230 1.18035 1.02454 0.82263 0.90506
1.91496 1.93520 1.48570 1.78714 1.21248 1.02523 1.00416 0.91963
1.21178 0.97659 0.90351 1.01151 1.43920 1.50270 1.08314 1.06912
0.69620 1.74124 1.16776 0.91025 1.25092 0.93783 0.93197 0.84746
0.89095 0.85831 0.92049 0.81687 0.83535 0.82384 0.82050 0.82924
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 1.35 10.56 113.37 1.20 2.55 16
2 O -0.38 -16.41 10.57 -51.39 -0.54 -16.96 16
3 C 0.49 25.25 5.96 71.23 0.42 25.67 16
4 O -0.54 -31.43 15.38 21.96 0.34 -31.09 16
5 C 0.15 7.69 5.17 85.63 0.44 8.13 16
6 N -0.43 -22.55 2.16 -643.11 -1.39 -23.95 16
7 C -0.33 -16.96 8.15 84.09 0.69 -16.28 16
8 H 0.13 6.23 5.68 -2.91 -0.02 6.21 16
9 C 0.00 0.06 5.33 84.95 0.45 0.51 16
10 N -0.90 -47.68 8.61 21.68 0.19 -47.49 16
11 Si 0.99 40.84 29.56 68.60 2.03 42.87 16
12 H -0.29 -12.05 7.11 99.48 0.71 -11.34 16
13 H -0.28 -11.35 7.11 99.48 0.71 -10.64 16
14 H -0.25 -9.58 7.11 99.48 0.71 -8.87 16
15 C 0.53 28.16 7.38 86.73 0.64 28.80 16
16 O -0.62 -34.60 16.58 -4.03 -0.07 -34.67 16
17 C -0.01 -0.39 6.85 42.35 0.29 -0.10 16
18 C -0.18 -6.65 10.16 22.64 0.23 -6.42 16
19 C 0.06 1.68 6.98 40.66 0.28 1.97 16
20 C -0.03 -0.73 5.87 -20.08 -0.12 -0.85 16
21 C -0.07 -1.41 9.57 22.50 0.22 -1.20 16
22 C -0.14 -2.40 10.01 22.28 0.22 -2.18 16
23 C 0.09 1.50 7.30 22.43 0.16 1.66 16
24 F -0.14 -2.67 17.26 44.97 0.78 -1.89 16
25 C -0.14 -2.10 10.01 22.28 0.22 -1.88 16
26 C -0.08 -1.35 9.71 22.50 0.22 -1.13 16
27 N -0.38 -11.12 6.80 -48.52 -0.33 -11.45 16
28 H 0.46 9.16 8.08 -220.00 -1.78 7.38 16
29 N -0.23 -9.56 8.91 -48.36 -0.43 -9.99 16
30 H 0.04 1.61 8.13 -2.39 -0.02 1.59 16
31 H 0.05 1.72 8.13 -2.39 -0.02 1.70 16
32 H 0.13 3.27 8.14 -2.39 -0.02 3.25 16
33 H 0.09 4.24 7.56 -2.39 -0.02 4.22 16
34 H 0.12 6.07 6.85 -2.38 -0.02 6.05 16
35 H 0.27 13.81 8.31 -92.71 -0.77 13.04 16
36 H 0.17 5.54 7.39 -2.91 -0.02 5.52 16
37 H 0.15 2.64 7.09 -2.91 -0.02 2.62 16
38 H 0.16 1.96 8.06 -2.91 -0.02 1.93 16
39 H 0.16 1.57 8.06 -2.91 -0.02 1.55 16
40 H 0.15 1.63 7.19 -2.91 -0.02 1.61 16
Total: -1.00 -75.04 354.82 5.49 -69.55
By element:
Atomic # 1 Polarization: 26.46 SS G_CDS: -0.65 Total: 25.81 kcal
Atomic # 6 Polarization: 33.69 SS G_CDS: 5.57 Total: 39.26 kcal
Atomic # 7 Polarization: -90.91 SS G_CDS: -1.97 Total: -92.88 kcal
Atomic # 8 Polarization: -82.45 SS G_CDS: -0.27 Total: -82.72 kcal
Atomic # 9 Polarization: -2.67 SS G_CDS: 0.78 Total: -1.89 kcal
Atomic # 14 Polarization: 40.84 SS G_CDS: 2.03 Total: 42.87 kcal
Total: -75.04 5.49 -69.55 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000348801223.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 7.853 kcal
(2) G-P(sol) polarization free energy of solvation -75.044 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.190 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.492 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.552 kcal
(6) G-S(sol) free energy of system = (1) + (5) -61.699 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.72 seconds