Wall clock time and date at job start Wed Apr 1 2020 04:07:12
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46497 * 1
3 3 C 1.34950 * 126.04207 * 2 1
4 4 C 1.35316 * 107.74476 * 180.14805 * 3 2 1
5 5 C 1.50700 * 126.03695 * 179.87595 * 4 3 2
6 6 H 1.09002 * 109.47371 * 19.71323 * 5 4 3
7 7 C 1.52998 * 109.47118 * 259.71364 * 5 4 3
8 8 O 1.42900 * 109.47075 * 305.00282 * 7 5 4
9 9 N 1.46493 * 109.47044 * 139.71467 * 5 4 3
10 10 C 1.34783 * 120.00266 * 204.99649 * 9 5 4
11 11 O 1.21554 * 119.99505 * 0.02562 * 10 9 5
12 12 C 1.47857 * 120.00551 * 180.02562 * 10 9 5
13 13 C 1.39683 * 120.10031 * 0.02562 * 12 10 9
14 14 C 1.38039 * 120.04013 * 179.97438 * 13 12 10
15 15 C 1.38176 * 120.24026 * 359.67736 * 14 13 12
16 16 C 1.39179 * 120.20540 * 0.59964 * 15 14 13
17 17 S 1.76194 * 120.02163 * 179.69520 * 16 15 14
18 18 C 1.76206 * 100.00127 * 265.25129 * 17 16 15
19 19 H 1.07994 * 120.00039 * 5.12620 * 18 17 16
20 20 C 1.38732 * 119.99565 * 185.12088 * 18 17 16
21 21 N 1.31616 * 120.00319 * 359.97438 * 20 18 17
22 22 Si 1.86808 * 119.99299 * 180.02562 * 20 18 17
23 23 H 1.48497 * 109.46950 * 90.00218 * 22 20 18
24 24 H 1.48495 * 109.46650 * 209.99977 * 22 20 18
25 25 H 1.48498 * 109.47335 * 329.99858 * 22 20 18
26 26 C 1.38875 * 119.95687 * 359.42658 * 16 15 14
27 27 C 1.39864 * 107.92040 * 359.61093 * 4 3 2
28 28 N 1.30841 * 108.20522 * 0.24197 * 27 4 3
29 29 H 1.09008 * 109.46908 * 270.26263 * 1 2 3
30 30 H 1.09007 * 109.46912 * 30.25737 * 1 2 3
31 31 H 1.08999 * 109.47745 * 150.25554 * 1 2 3
32 32 H 1.08002 * 126.12608 * 0.02562 * 3 2 1
33 33 H 1.09008 * 109.47213 * 64.99868 * 7 5 4
34 34 H 1.09000 * 109.47294 * 184.99764 * 7 5 4
35 35 H 0.96708 * 114.00205 * 180.02562 * 8 7 5
36 36 H 0.97000 * 120.00523 * 25.00352 * 9 5 4
37 37 H 1.08002 * 119.97685 * 359.97438 * 13 12 10
38 38 H 1.07999 * 119.87763 * 179.97438 * 14 13 12
39 39 H 1.08006 * 119.89818 * 180.31426 * 15 14 13
40 40 H 0.97004 * 119.99833 * 179.97438 * 21 20 18
41 41 H 1.07994 * 120.12344 * 180.29777 * 26 16 15
42 42 H 1.08007 * 125.89718 * 180.21908 * 27 4 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.2590 1.0912 0.0000
4 6 3.5437 0.6664 -0.0033
5 6 4.7681 1.5450 -0.0072
6 1 4.5002 2.5431 0.3397
7 6 5.3286 1.6324 -1.4281
8 8 5.5710 0.3151 -1.9263
9 7 5.7815 0.9742 0.8834
10 6 6.7157 1.7709 1.4395
11 8 6.7170 2.9631 1.2024
12 6 7.7390 1.1948 2.3379
13 6 7.7399 -0.1750 2.6114
14 6 8.6961 -0.7117 3.4499
15 6 9.6596 0.1006 4.0166
16 6 9.6647 1.4677 3.7556
17 16 10.8907 2.5003 4.4873
18 6 10.0123 3.0576 5.9095
19 1 9.0320 2.6608 6.1286
20 6 10.5800 4.0060 6.7478
21 7 11.7749 4.4892 6.4812
22 14 9.6490 4.5963 8.2560
23 1 9.9859 3.7318 9.4154
24 1 10.0323 5.9991 8.5565
25 1 8.1888 4.5273 7.9948
26 6 8.7063 2.0166 2.9137
27 6 3.5345 -0.7322 0.0036
28 7 2.2890 -1.1328 0.0056
29 1 -0.3633 0.0047 1.0277
30 1 -0.3633 0.8877 -0.5179
31 1 -0.3634 -0.8922 -0.5098
32 1 1.9283 2.1193 0.0004
33 1 4.6089 2.1377 -2.0722
34 1 6.2627 2.1940 -1.4163
35 1 5.9284 0.2939 -2.8247
36 1 5.7804 0.0229 1.0728
37 1 6.9919 -0.8146 2.1665
38 1 8.6941 -1.7710 3.6599
39 1 10.4082 -0.3259 4.6679
40 1 12.1717 5.1526 7.0672
41 1 8.7107 3.0763 2.7055
42 1 4.4053 -1.3712 0.0064
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000351463804.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:07:12
Heat of formation + Delta-G solvation = 22.747840 kcal
Electronic energy + Delta-G solvation = -26702.308995 eV
Core-core repulsion = 22775.535318 eV
Total energy + Delta-G solvation = -3926.773678 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 347.109 amu
Computer time = 0.61 seconds
Orbital eigenvalues (eV)
-41.58001 -39.92147 -38.01280 -37.00312 -34.87896 -33.30836 -32.48568 -31.71125
-30.56748 -30.27012 -28.49813 -26.76402 -25.54634 -24.08340 -22.74126 -22.10099
-21.56851 -20.39926 -19.96353 -18.42623 -17.57899 -17.54158 -16.96145 -16.06469
-15.76741 -15.61035 -15.20275 -15.02309 -14.82912 -14.64783 -14.36290 -14.25118
-13.74946 -13.52919 -13.49798 -13.33811 -13.07692 -12.92418 -12.70019 -12.59501
-12.18945 -11.85131 -11.59928 -11.12850 -11.09827 -11.05784 -10.83769 -10.67821
-10.23308 -9.93658 -9.73853 -9.69230 -9.16252 -9.14315 -8.98105 -8.69318
-8.53231 -7.98841 -6.68488 -6.26383 -3.99951 1.21552 1.57116 1.71832
2.20277 2.48206 3.07286 3.21301 3.23088 3.25511 3.30143 3.50696
4.07973 4.13749 4.17486 4.30273 4.51855 4.67040 4.73666 4.87686
4.96675 4.99244 5.04320 5.09929 5.14652 5.22636 5.28577 5.32971
5.43904 5.50323 5.60350 5.74807 5.83067 5.92266 6.04382 6.30531
6.34062 6.44086 6.63680 6.66712 6.69254 6.97730 7.24175 7.40917
7.43918 7.58047 7.59944 8.33768 8.35171 9.19490 10.80316
Molecular weight = 347.11amu
Principal moments of inertia in cm(-1)
A = 0.015011 B = 0.002342 C = 0.002234
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1864.836108 B =11951.544266 C =12528.460905
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.102 3.898
2 N -0.378 5.378
3 C 0.065 3.935
4 C -0.238 4.238
5 C 0.230 3.770
6 H 0.105 0.895
7 C 0.070 3.930
8 O -0.564 6.564
9 N -0.716 5.716
10 C 0.566 3.434
11 O -0.539 6.539
12 C -0.154 4.154
13 C -0.088 4.088
14 C -0.141 4.141
15 C -0.055 4.055
16 C -0.108 4.108
17 S -0.036 6.036
18 C -0.518 4.518
19 H 0.076 0.924
20 C 0.073 3.927
21 N -0.870 5.870
22 Si 0.920 3.080
23 H -0.276 1.276
24 H -0.281 1.281
25 H -0.271 1.271
26 C -0.019 4.019
27 C 0.078 3.922
28 N -0.300 5.300
29 H 0.074 0.926
30 H 0.087 0.913
31 H 0.088 0.912
32 H 0.175 0.825
33 H 0.050 0.950
34 H 0.055 0.945
35 H 0.376 0.624
36 H 0.401 0.599
37 H 0.117 0.883
38 H 0.123 0.877
39 H 0.131 0.869
40 H 0.269 0.731
41 H 0.139 0.861
42 H 0.182 0.818
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -19.569 -10.010 -16.034 27.207
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.039 4.039
2 N -0.159 5.159
3 C -0.082 4.082
4 C -0.250 4.250
5 C 0.124 3.876
6 H 0.123 0.877
7 C -0.009 4.009
8 O -0.369 6.369
9 N -0.368 5.368
10 C 0.355 3.645
11 O -0.417 6.417
12 C -0.159 4.159
13 C -0.107 4.107
14 C -0.161 4.161
15 C -0.076 4.076
16 C -0.218 4.218
17 S 0.199 5.801
18 C -0.666 4.666
19 H 0.094 0.906
20 C -0.136 4.136
21 N -0.506 5.506
22 Si 0.746 3.254
23 H -0.202 1.202
24 H -0.207 1.207
25 H -0.196 1.196
26 C -0.040 4.040
27 C -0.109 4.109
28 N -0.121 5.121
29 H 0.093 0.907
30 H 0.105 0.895
31 H 0.107 0.893
32 H 0.192 0.808
33 H 0.069 0.931
34 H 0.073 0.927
35 H 0.222 0.778
36 H 0.236 0.764
37 H 0.135 0.865
38 H 0.141 0.859
39 H 0.149 0.851
40 H 0.079 0.921
41 H 0.157 0.843
42 H 0.199 0.801
Dipole moment (debyes) X Y Z Total
from point charges -19.522 -9.901 -15.868 27.036
hybrid contribution -1.172 0.522 0.800 1.512
sum -20.694 -9.379 -15.068 27.262
Atomic orbital electron populations
1.21854 0.74163 1.04452 1.03445 1.48444 1.06641 1.03827 1.57011
1.22265 0.90599 0.93558 1.01765 1.19884 0.93543 0.94298 1.17302
1.19078 0.84039 0.96475 0.88008 0.87748 1.22600 0.99493 0.84477
0.94353 1.86468 1.87470 1.27750 1.35228 1.45837 1.30445 1.11876
1.48669 1.18414 0.80772 0.86038 0.79301 1.90759 1.73738 1.15152
1.62043 1.19843 0.98865 0.94383 1.02760 1.21154 0.98252 0.93596
0.97677 1.21057 0.96196 0.99749 0.99102 1.21951 0.96613 0.93101
0.95984 1.22835 1.01456 0.97638 0.99918 1.83592 1.14847 1.54409
1.27261 1.22837 1.06273 1.28393 1.09080 0.90633 1.25000 0.95256
0.95007 0.98340 1.69987 1.14583 1.28343 1.37669 0.86125 0.79871
0.78019 0.81340 1.20190 1.20673 1.19569 1.21934 0.90488 1.00169
0.91438 1.23617 0.94936 0.94272 0.98041 1.77398 1.01671 1.08063
1.24954 0.90702 0.89486 0.89296 0.80788 0.93138 0.92666 0.77809
0.76351 0.86500 0.85873 0.85126 0.92089 0.84342 0.80147
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.10 0.47 11.47 59.85 0.69 1.16 16
2 N -0.38 -3.34 4.01 -68.16 -0.27 -3.61 16
3 C 0.07 0.55 11.40 -17.22 -0.20 0.35 16
4 C -0.24 -2.34 4.84 -105.06 -0.51 -2.85 16
5 C 0.23 2.45 2.80 -69.09 -0.19 2.25 16
6 H 0.10 1.17 7.57 -51.93 -0.39 0.78 16
7 C 0.07 0.66 6.84 37.16 0.25 0.92 16
8 O -0.56 -5.02 12.53 -35.23 -0.44 -5.46 16
9 N -0.72 -8.70 4.96 -55.88 -0.28 -8.98 16
10 C 0.57 9.12 7.74 -12.32 -0.10 9.03 16
11 O -0.54 -10.34 16.01 5.32 0.09 -10.25 16
12 C -0.15 -2.63 5.87 -105.00 -0.62 -3.24 16
13 C -0.09 -1.24 9.54 -39.12 -0.37 -1.62 16
14 C -0.14 -2.08 10.02 -39.68 -0.40 -2.47 16
15 C -0.06 -1.01 9.79 -39.25 -0.38 -1.39 16
16 C -0.11 -2.33 5.45 -39.00 -0.21 -2.54 16
17 S -0.04 -0.92 21.41 -107.50 -2.30 -3.23 16
18 C -0.52 -14.72 9.46 30.91 0.29 -14.43 16
19 H 0.08 2.13 7.79 -52.49 -0.41 1.72 16
20 C 0.07 2.06 5.49 -17.46 -0.10 1.96 16
21 N -0.87 -25.57 13.22 55.49 0.73 -24.83 16
22 Si 0.92 21.59 29.55 -169.99 -5.02 16.56 16
23 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16
24 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16
25 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16
26 C -0.02 -0.38 9.34 -38.92 -0.36 -0.74 16
27 C 0.08 0.81 10.50 -17.37 -0.18 0.63 16
28 N -0.30 -3.39 12.58 30.63 0.39 -3.00 16
29 H 0.07 0.29 8.14 -51.92 -0.42 -0.14 16
30 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16
31 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16
32 H 0.17 0.90 8.06 -52.49 -0.42 0.47 16
33 H 0.05 0.39 8.14 -51.92 -0.42 -0.03 16
34 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16
35 H 0.38 1.94 9.12 45.56 0.42 2.36 16
36 H 0.40 4.20 5.66 -40.82 -0.23 3.97 16
37 H 0.12 1.23 6.40 -52.49 -0.34 0.89 16
38 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16
39 H 0.13 2.25 8.06 -52.48 -0.42 1.83 16
40 H 0.27 7.37 8.31 -40.82 -0.34 7.04 16
41 H 0.14 3.06 7.65 -52.49 -0.40 2.66 16
42 H 0.18 1.62 7.72 -52.48 -0.41 1.22 16
LS Contribution 381.23 15.07 5.75 5.75
Total: -1.00 -36.25 381.23 -8.03 -44.28
By element:
Atomic # 1 Polarization: 10.06 SS G_CDS: -4.28 Total: 5.78 kcal
Atomic # 6 Polarization: -10.61 SS G_CDS: -2.39 Total: -13.00 kcal
Atomic # 7 Polarization: -41.00 SS G_CDS: 0.57 Total: -40.43 kcal
Atomic # 8 Polarization: -15.36 SS G_CDS: -0.36 Total: -15.71 kcal
Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.56 kcal
Atomic # 16 Polarization: -0.92 SS G_CDS: -2.30 Total: -3.23 kcal
Total LS contribution 5.75 Total: 5.75 kcal
Total: -36.25 -8.03 -44.28 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000351463804.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 67.027 kcal
(2) G-P(sol) polarization free energy of solvation -36.248 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.779 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.031 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.279 kcal
(6) G-S(sol) free energy of system = (1) + (5) 22.748 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.61 seconds