Wall clock time and date at job start Wed Apr 1 2020 04:07:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34950 * 126.04207 * 2 1 4 4 C 1.35316 * 107.74476 * 180.14805 * 3 2 1 5 5 C 1.50700 * 126.03695 * 179.87595 * 4 3 2 6 6 H 1.09002 * 109.47371 * 19.71323 * 5 4 3 7 7 C 1.52998 * 109.47118 * 259.71364 * 5 4 3 8 8 O 1.42900 * 109.47075 * 305.00282 * 7 5 4 9 9 N 1.46493 * 109.47044 * 139.71467 * 5 4 3 10 10 C 1.34783 * 120.00266 * 204.99649 * 9 5 4 11 11 O 1.21554 * 119.99505 * 0.02562 * 10 9 5 12 12 C 1.47857 * 120.00551 * 180.02562 * 10 9 5 13 13 C 1.39683 * 120.10031 * 0.02562 * 12 10 9 14 14 C 1.38039 * 120.04013 * 179.97438 * 13 12 10 15 15 C 1.38176 * 120.24026 * 359.67736 * 14 13 12 16 16 C 1.39179 * 120.20540 * 0.59964 * 15 14 13 17 17 S 1.76194 * 120.02163 * 179.69520 * 16 15 14 18 18 C 1.76206 * 100.00127 * 265.25129 * 17 16 15 19 19 H 1.07994 * 120.00039 * 5.12620 * 18 17 16 20 20 C 1.38732 * 119.99565 * 185.12088 * 18 17 16 21 21 N 1.31616 * 120.00319 * 359.97438 * 20 18 17 22 22 Si 1.86808 * 119.99299 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.46950 * 90.00218 * 22 20 18 24 24 H 1.48495 * 109.46650 * 209.99977 * 22 20 18 25 25 H 1.48498 * 109.47335 * 329.99858 * 22 20 18 26 26 C 1.38875 * 119.95687 * 359.42658 * 16 15 14 27 27 C 1.39864 * 107.92040 * 359.61093 * 4 3 2 28 28 N 1.30841 * 108.20522 * 0.24197 * 27 4 3 29 29 H 1.09008 * 109.46908 * 270.26263 * 1 2 3 30 30 H 1.09007 * 109.46912 * 30.25737 * 1 2 3 31 31 H 1.08999 * 109.47745 * 150.25554 * 1 2 3 32 32 H 1.08002 * 126.12608 * 0.02562 * 3 2 1 33 33 H 1.09008 * 109.47213 * 64.99868 * 7 5 4 34 34 H 1.09000 * 109.47294 * 184.99764 * 7 5 4 35 35 H 0.96708 * 114.00205 * 180.02562 * 8 7 5 36 36 H 0.97000 * 120.00523 * 25.00352 * 9 5 4 37 37 H 1.08002 * 119.97685 * 359.97438 * 13 12 10 38 38 H 1.07999 * 119.87763 * 179.97438 * 14 13 12 39 39 H 1.08006 * 119.89818 * 180.31426 * 15 14 13 40 40 H 0.97004 * 119.99833 * 179.97438 * 21 20 18 41 41 H 1.07994 * 120.12344 * 180.29777 * 26 16 15 42 42 H 1.08007 * 125.89718 * 180.21908 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2590 1.0912 0.0000 4 6 3.5437 0.6664 -0.0033 5 6 4.7681 1.5450 -0.0072 6 1 4.5002 2.5431 0.3397 7 6 5.3286 1.6324 -1.4281 8 8 5.5710 0.3151 -1.9263 9 7 5.7815 0.9742 0.8834 10 6 6.7157 1.7709 1.4395 11 8 6.7170 2.9631 1.2024 12 6 7.7390 1.1948 2.3379 13 6 7.7399 -0.1750 2.6114 14 6 8.6961 -0.7117 3.4499 15 6 9.6596 0.1006 4.0166 16 6 9.6647 1.4677 3.7556 17 16 10.8907 2.5003 4.4873 18 6 10.0123 3.0576 5.9095 19 1 9.0320 2.6608 6.1286 20 6 10.5800 4.0060 6.7478 21 7 11.7749 4.4892 6.4812 22 14 9.6490 4.5963 8.2560 23 1 9.9859 3.7318 9.4154 24 1 10.0323 5.9991 8.5565 25 1 8.1888 4.5273 7.9948 26 6 8.7063 2.0166 2.9137 27 6 3.5345 -0.7322 0.0036 28 7 2.2890 -1.1328 0.0056 29 1 -0.3633 0.0047 1.0277 30 1 -0.3633 0.8877 -0.5179 31 1 -0.3634 -0.8922 -0.5098 32 1 1.9283 2.1193 0.0004 33 1 4.6089 2.1377 -2.0722 34 1 6.2627 2.1940 -1.4163 35 1 5.9284 0.2939 -2.8247 36 1 5.7804 0.0229 1.0728 37 1 6.9919 -0.8146 2.1665 38 1 8.6941 -1.7710 3.6599 39 1 10.4082 -0.3259 4.6679 40 1 12.1717 5.1526 7.0672 41 1 8.7107 3.0763 2.7055 42 1 4.4053 -1.3712 0.0064 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351463804.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:07:12 Heat of formation + Delta-G solvation = 22.747840 kcal Electronic energy + Delta-G solvation = -26702.308995 eV Core-core repulsion = 22775.535318 eV Total energy + Delta-G solvation = -3926.773678 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.58001 -39.92147 -38.01280 -37.00312 -34.87896 -33.30836 -32.48568 -31.71125 -30.56748 -30.27012 -28.49813 -26.76402 -25.54634 -24.08340 -22.74126 -22.10099 -21.56851 -20.39926 -19.96353 -18.42623 -17.57899 -17.54158 -16.96145 -16.06469 -15.76741 -15.61035 -15.20275 -15.02309 -14.82912 -14.64783 -14.36290 -14.25118 -13.74946 -13.52919 -13.49798 -13.33811 -13.07692 -12.92418 -12.70019 -12.59501 -12.18945 -11.85131 -11.59928 -11.12850 -11.09827 -11.05784 -10.83769 -10.67821 -10.23308 -9.93658 -9.73853 -9.69230 -9.16252 -9.14315 -8.98105 -8.69318 -8.53231 -7.98841 -6.68488 -6.26383 -3.99951 1.21552 1.57116 1.71832 2.20277 2.48206 3.07286 3.21301 3.23088 3.25511 3.30143 3.50696 4.07973 4.13749 4.17486 4.30273 4.51855 4.67040 4.73666 4.87686 4.96675 4.99244 5.04320 5.09929 5.14652 5.22636 5.28577 5.32971 5.43904 5.50323 5.60350 5.74807 5.83067 5.92266 6.04382 6.30531 6.34062 6.44086 6.63680 6.66712 6.69254 6.97730 7.24175 7.40917 7.43918 7.58047 7.59944 8.33768 8.35171 9.19490 10.80316 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.015011 B = 0.002342 C = 0.002234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1864.836108 B =11951.544266 C =12528.460905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.378 5.378 3 C 0.065 3.935 4 C -0.238 4.238 5 C 0.230 3.770 6 H 0.105 0.895 7 C 0.070 3.930 8 O -0.564 6.564 9 N -0.716 5.716 10 C 0.566 3.434 11 O -0.539 6.539 12 C -0.154 4.154 13 C -0.088 4.088 14 C -0.141 4.141 15 C -0.055 4.055 16 C -0.108 4.108 17 S -0.036 6.036 18 C -0.518 4.518 19 H 0.076 0.924 20 C 0.073 3.927 21 N -0.870 5.870 22 Si 0.920 3.080 23 H -0.276 1.276 24 H -0.281 1.281 25 H -0.271 1.271 26 C -0.019 4.019 27 C 0.078 3.922 28 N -0.300 5.300 29 H 0.074 0.926 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.175 0.825 33 H 0.050 0.950 34 H 0.055 0.945 35 H 0.376 0.624 36 H 0.401 0.599 37 H 0.117 0.883 38 H 0.123 0.877 39 H 0.131 0.869 40 H 0.269 0.731 41 H 0.139 0.861 42 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.569 -10.010 -16.034 27.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.159 5.159 3 C -0.082 4.082 4 C -0.250 4.250 5 C 0.124 3.876 6 H 0.123 0.877 7 C -0.009 4.009 8 O -0.369 6.369 9 N -0.368 5.368 10 C 0.355 3.645 11 O -0.417 6.417 12 C -0.159 4.159 13 C -0.107 4.107 14 C -0.161 4.161 15 C -0.076 4.076 16 C -0.218 4.218 17 S 0.199 5.801 18 C -0.666 4.666 19 H 0.094 0.906 20 C -0.136 4.136 21 N -0.506 5.506 22 Si 0.746 3.254 23 H -0.202 1.202 24 H -0.207 1.207 25 H -0.196 1.196 26 C -0.040 4.040 27 C -0.109 4.109 28 N -0.121 5.121 29 H 0.093 0.907 30 H 0.105 0.895 31 H 0.107 0.893 32 H 0.192 0.808 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.222 0.778 36 H 0.236 0.764 37 H 0.135 0.865 38 H 0.141 0.859 39 H 0.149 0.851 40 H 0.079 0.921 41 H 0.157 0.843 42 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -19.522 -9.901 -15.868 27.036 hybrid contribution -1.172 0.522 0.800 1.512 sum -20.694 -9.379 -15.068 27.262 Atomic orbital electron populations 1.21854 0.74163 1.04452 1.03445 1.48444 1.06641 1.03827 1.57011 1.22265 0.90599 0.93558 1.01765 1.19884 0.93543 0.94298 1.17302 1.19078 0.84039 0.96475 0.88008 0.87748 1.22600 0.99493 0.84477 0.94353 1.86468 1.87470 1.27750 1.35228 1.45837 1.30445 1.11876 1.48669 1.18414 0.80772 0.86038 0.79301 1.90759 1.73738 1.15152 1.62043 1.19843 0.98865 0.94383 1.02760 1.21154 0.98252 0.93596 0.97677 1.21057 0.96196 0.99749 0.99102 1.21951 0.96613 0.93101 0.95984 1.22835 1.01456 0.97638 0.99918 1.83592 1.14847 1.54409 1.27261 1.22837 1.06273 1.28393 1.09080 0.90633 1.25000 0.95256 0.95007 0.98340 1.69987 1.14583 1.28343 1.37669 0.86125 0.79871 0.78019 0.81340 1.20190 1.20673 1.19569 1.21934 0.90488 1.00169 0.91438 1.23617 0.94936 0.94272 0.98041 1.77398 1.01671 1.08063 1.24954 0.90702 0.89486 0.89296 0.80788 0.93138 0.92666 0.77809 0.76351 0.86500 0.85873 0.85126 0.92089 0.84342 0.80147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.47 11.47 59.85 0.69 1.16 16 2 N -0.38 -3.34 4.01 -68.16 -0.27 -3.61 16 3 C 0.07 0.55 11.40 -17.22 -0.20 0.35 16 4 C -0.24 -2.34 4.84 -105.06 -0.51 -2.85 16 5 C 0.23 2.45 2.80 -69.09 -0.19 2.25 16 6 H 0.10 1.17 7.57 -51.93 -0.39 0.78 16 7 C 0.07 0.66 6.84 37.16 0.25 0.92 16 8 O -0.56 -5.02 12.53 -35.23 -0.44 -5.46 16 9 N -0.72 -8.70 4.96 -55.88 -0.28 -8.98 16 10 C 0.57 9.12 7.74 -12.32 -0.10 9.03 16 11 O -0.54 -10.34 16.01 5.32 0.09 -10.25 16 12 C -0.15 -2.63 5.87 -105.00 -0.62 -3.24 16 13 C -0.09 -1.24 9.54 -39.12 -0.37 -1.62 16 14 C -0.14 -2.08 10.02 -39.68 -0.40 -2.47 16 15 C -0.06 -1.01 9.79 -39.25 -0.38 -1.39 16 16 C -0.11 -2.33 5.45 -39.00 -0.21 -2.54 16 17 S -0.04 -0.92 21.41 -107.50 -2.30 -3.23 16 18 C -0.52 -14.72 9.46 30.91 0.29 -14.43 16 19 H 0.08 2.13 7.79 -52.49 -0.41 1.72 16 20 C 0.07 2.06 5.49 -17.46 -0.10 1.96 16 21 N -0.87 -25.57 13.22 55.49 0.73 -24.83 16 22 Si 0.92 21.59 29.55 -169.99 -5.02 16.56 16 23 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 25 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 26 C -0.02 -0.38 9.34 -38.92 -0.36 -0.74 16 27 C 0.08 0.81 10.50 -17.37 -0.18 0.63 16 28 N -0.30 -3.39 12.58 30.63 0.39 -3.00 16 29 H 0.07 0.29 8.14 -51.92 -0.42 -0.14 16 30 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 31 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.17 0.90 8.06 -52.49 -0.42 0.47 16 33 H 0.05 0.39 8.14 -51.92 -0.42 -0.03 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.38 1.94 9.12 45.56 0.42 2.36 16 36 H 0.40 4.20 5.66 -40.82 -0.23 3.97 16 37 H 0.12 1.23 6.40 -52.49 -0.34 0.89 16 38 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 39 H 0.13 2.25 8.06 -52.48 -0.42 1.83 16 40 H 0.27 7.37 8.31 -40.82 -0.34 7.04 16 41 H 0.14 3.06 7.65 -52.49 -0.40 2.66 16 42 H 0.18 1.62 7.72 -52.48 -0.41 1.22 16 LS Contribution 381.23 15.07 5.75 5.75 Total: -1.00 -36.25 381.23 -8.03 -44.28 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -4.28 Total: 5.78 kcal Atomic # 6 Polarization: -10.61 SS G_CDS: -2.39 Total: -13.00 kcal Atomic # 7 Polarization: -41.00 SS G_CDS: 0.57 Total: -40.43 kcal Atomic # 8 Polarization: -15.36 SS G_CDS: -0.36 Total: -15.71 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 16 Polarization: -0.92 SS G_CDS: -2.30 Total: -3.23 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -36.25 -8.03 -44.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351463804.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.027 kcal (2) G-P(sol) polarization free energy of solvation -36.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.279 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds