Wall clock time and date at job start Wed Apr 1 2020 04:07:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34950 * 126.04207 * 2 1 4 4 C 1.35316 * 107.74476 * 180.14805 * 3 2 1 5 5 C 1.50700 * 126.03695 * 179.87595 * 4 3 2 6 6 H 1.09002 * 109.47371 * 19.71323 * 5 4 3 7 7 C 1.52998 * 109.47118 * 259.71364 * 5 4 3 8 8 O 1.42900 * 109.47075 * 305.00282 * 7 5 4 9 9 N 1.46493 * 109.47044 * 139.71467 * 5 4 3 10 10 C 1.34783 * 120.00266 * 204.99649 * 9 5 4 11 11 O 1.21554 * 119.99505 * 0.02562 * 10 9 5 12 12 C 1.47857 * 120.00551 * 180.02562 * 10 9 5 13 13 C 1.39683 * 120.10031 * 0.02562 * 12 10 9 14 14 C 1.38039 * 120.04013 * 179.97438 * 13 12 10 15 15 C 1.38176 * 120.24026 * 359.67736 * 14 13 12 16 16 C 1.39179 * 120.20540 * 0.59964 * 15 14 13 17 17 S 1.76194 * 120.02163 * 179.69520 * 16 15 14 18 18 C 1.76206 * 100.00127 * 265.25129 * 17 16 15 19 19 H 1.07994 * 120.00039 * 5.12620 * 18 17 16 20 20 C 1.38732 * 119.99565 * 185.12088 * 18 17 16 21 21 N 1.31616 * 120.00319 * 359.97438 * 20 18 17 22 22 Si 1.86808 * 119.99299 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.46950 * 90.00218 * 22 20 18 24 24 H 1.48495 * 109.46650 * 209.99977 * 22 20 18 25 25 H 1.48498 * 109.47335 * 329.99858 * 22 20 18 26 26 C 1.38875 * 119.95687 * 359.42658 * 16 15 14 27 27 C 1.39864 * 107.92040 * 359.61093 * 4 3 2 28 28 N 1.30841 * 108.20522 * 0.24197 * 27 4 3 29 29 H 1.09008 * 109.46908 * 270.26263 * 1 2 3 30 30 H 1.09007 * 109.46912 * 30.25737 * 1 2 3 31 31 H 1.08999 * 109.47745 * 150.25554 * 1 2 3 32 32 H 1.08002 * 126.12608 * 0.02562 * 3 2 1 33 33 H 1.09008 * 109.47213 * 64.99868 * 7 5 4 34 34 H 1.09000 * 109.47294 * 184.99764 * 7 5 4 35 35 H 0.96708 * 114.00205 * 180.02562 * 8 7 5 36 36 H 0.97000 * 120.00523 * 25.00352 * 9 5 4 37 37 H 1.08002 * 119.97685 * 359.97438 * 13 12 10 38 38 H 1.07999 * 119.87763 * 179.97438 * 14 13 12 39 39 H 1.08006 * 119.89818 * 180.31426 * 15 14 13 40 40 H 0.97004 * 119.99833 * 179.97438 * 21 20 18 41 41 H 1.07994 * 120.12344 * 180.29777 * 26 16 15 42 42 H 1.08007 * 125.89718 * 180.21908 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2590 1.0912 0.0000 4 6 3.5437 0.6664 -0.0033 5 6 4.7681 1.5450 -0.0072 6 1 4.5002 2.5431 0.3397 7 6 5.3286 1.6324 -1.4281 8 8 5.5710 0.3151 -1.9263 9 7 5.7815 0.9742 0.8834 10 6 6.7157 1.7709 1.4395 11 8 6.7170 2.9631 1.2024 12 6 7.7390 1.1948 2.3379 13 6 7.7399 -0.1750 2.6114 14 6 8.6961 -0.7117 3.4499 15 6 9.6596 0.1006 4.0166 16 6 9.6647 1.4677 3.7556 17 16 10.8907 2.5003 4.4873 18 6 10.0123 3.0576 5.9095 19 1 9.0320 2.6608 6.1286 20 6 10.5800 4.0060 6.7478 21 7 11.7749 4.4892 6.4812 22 14 9.6490 4.5963 8.2560 23 1 9.9859 3.7318 9.4154 24 1 10.0323 5.9991 8.5565 25 1 8.1888 4.5273 7.9948 26 6 8.7063 2.0166 2.9137 27 6 3.5345 -0.7322 0.0036 28 7 2.2890 -1.1328 0.0056 29 1 -0.3633 0.0047 1.0277 30 1 -0.3633 0.8877 -0.5179 31 1 -0.3634 -0.8922 -0.5098 32 1 1.9283 2.1193 0.0004 33 1 4.6089 2.1377 -2.0722 34 1 6.2627 2.1940 -1.4163 35 1 5.9284 0.2939 -2.8247 36 1 5.7804 0.0229 1.0728 37 1 6.9919 -0.8146 2.1665 38 1 8.6941 -1.7710 3.6599 39 1 10.4082 -0.3259 4.6679 40 1 12.1717 5.1526 7.0672 41 1 8.7107 3.0763 2.7055 42 1 4.4053 -1.3712 0.0064 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000351463804.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:07:11 Heat of formation + Delta-G solvation = -4.438527 kcal Electronic energy + Delta-G solvation = -26703.487885 eV Core-core repulsion = 22775.535318 eV Total energy + Delta-G solvation = -3927.952567 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.27556 -41.14641 -39.26947 -37.90362 -35.80454 -34.64459 -33.98375 -32.78904 -31.92735 -31.34876 -29.26475 -27.73322 -27.32627 -25.24865 -23.85622 -23.30795 -22.33790 -21.34690 -20.94337 -19.98204 -19.11244 -18.27480 -17.91152 -17.20149 -16.92562 -16.77393 -16.54873 -16.34247 -16.12635 -15.65006 -15.42859 -15.32984 -15.01304 -14.65211 -14.57304 -14.37736 -14.11328 -13.80055 -13.57831 -13.29844 -13.24084 -13.23608 -13.02946 -12.96077 -12.63577 -12.59042 -12.37148 -11.73939 -11.55070 -11.25653 -11.16118 -10.85470 -10.71874 -10.36438 -10.25404 -9.88513 -9.67876 -9.37661 -8.79086 -8.38271 -6.18034 -0.15723 0.27777 0.92930 1.30110 1.37812 1.46506 1.63908 1.67159 1.73777 1.85505 2.19695 2.27410 2.82904 2.94583 3.42205 3.43544 3.59212 3.69686 3.96255 3.99839 4.04768 4.13222 4.23533 4.36591 4.37855 4.45753 4.49679 4.51638 4.58582 4.68366 4.71842 4.75883 4.90998 4.94994 5.03588 5.24600 5.34325 5.39645 5.45564 5.52256 5.65409 5.88182 6.11319 6.16808 6.50114 6.73408 6.93273 7.02026 7.15766 8.68756 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.015011 B = 0.002342 C = 0.002234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1864.836108 B =11951.544266 C =12528.460905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.379 5.379 3 C 0.072 3.928 4 C -0.254 4.254 5 C 0.229 3.771 6 H 0.096 0.904 7 C 0.077 3.923 8 O -0.572 6.572 9 N -0.695 5.695 10 C 0.566 3.434 11 O -0.578 6.578 12 C -0.156 4.156 13 C -0.064 4.064 14 C -0.122 4.122 15 C -0.063 4.063 16 C -0.130 4.130 17 S -0.094 6.094 18 C -0.535 4.535 19 H 0.066 0.934 20 C 0.019 3.981 21 N -0.906 5.906 22 Si 0.992 3.008 23 H -0.263 1.263 24 H -0.272 1.272 25 H -0.269 1.269 26 C -0.043 4.043 27 C 0.072 3.928 28 N -0.334 5.334 29 H 0.083 0.917 30 H 0.115 0.885 31 H 0.090 0.910 32 H 0.206 0.794 33 H 0.071 0.929 34 H 0.034 0.966 35 H 0.392 0.608 36 H 0.411 0.589 37 H 0.167 0.833 38 H 0.174 0.826 39 H 0.135 0.865 40 H 0.274 0.726 41 H 0.105 0.895 42 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.642 -12.194 -16.412 30.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.160 5.160 3 C -0.076 4.076 4 C -0.266 4.266 5 C 0.124 3.876 6 H 0.114 0.886 7 C -0.003 4.003 8 O -0.380 6.380 9 N -0.346 5.346 10 C 0.354 3.646 11 O -0.459 6.459 12 C -0.161 4.161 13 C -0.083 4.083 14 C -0.141 4.141 15 C -0.084 4.084 16 C -0.241 4.241 17 S 0.141 5.859 18 C -0.682 4.682 19 H 0.085 0.915 20 C -0.186 4.186 21 N -0.542 5.542 22 Si 0.814 3.186 23 H -0.187 1.187 24 H -0.197 1.197 25 H -0.193 1.193 26 C -0.065 4.065 27 C -0.114 4.114 28 N -0.156 5.156 29 H 0.101 0.899 30 H 0.134 0.866 31 H 0.109 0.891 32 H 0.222 0.778 33 H 0.089 0.911 34 H 0.052 0.948 35 H 0.241 0.759 36 H 0.249 0.751 37 H 0.184 0.816 38 H 0.191 0.809 39 H 0.153 0.847 40 H 0.083 0.917 41 H 0.123 0.877 42 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -22.620 -12.142 -16.282 30.400 hybrid contribution -0.360 1.068 0.755 1.356 sum -22.980 -11.074 -15.527 29.863 Atomic orbital electron populations 1.22191 0.72009 1.05999 1.04504 1.48782 1.07925 1.03314 1.55995 1.22768 0.90185 0.94783 0.99861 1.19800 0.93649 0.94000 1.19136 1.19155 0.84060 0.96253 0.88149 0.88571 1.22452 0.98922 0.84750 0.94138 1.86418 1.87656 1.27189 1.36704 1.45703 1.29348 1.11966 1.47605 1.18311 0.81232 0.85735 0.79334 1.90743 1.74810 1.16907 1.63480 1.19968 0.98088 0.95524 1.02498 1.21682 0.98321 0.92414 0.95869 1.21529 0.93964 1.01573 0.97014 1.22061 0.97992 0.91765 0.96571 1.22500 1.01490 0.98385 1.01704 1.83470 1.18205 1.56541 1.27694 1.23055 1.06029 1.28909 1.10237 0.91533 1.26005 0.96142 0.94918 1.01536 1.70107 1.16114 1.28937 1.39063 0.85047 0.78271 0.77918 0.77384 1.18741 1.19667 1.19340 1.21623 0.92322 0.99283 0.93254 1.23793 0.95116 0.94622 0.97886 1.77340 1.02302 1.09675 1.26276 0.89864 0.86645 0.89133 0.77773 0.91141 0.94765 0.75899 0.75094 0.81553 0.80894 0.84713 0.91707 0.87696 0.79364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.59 11.47 127.77 1.47 2.06 16 2 N -0.38 -5.71 4.01 -369.55 -1.48 -7.19 16 3 C 0.07 1.00 11.40 83.54 0.95 1.95 16 4 C -0.25 -4.39 4.84 -20.15 -0.10 -4.49 16 5 C 0.23 4.49 2.80 44.25 0.12 4.62 16 6 H 0.10 2.07 7.57 -2.39 -0.02 2.05 16 7 C 0.08 1.34 6.84 71.98 0.49 1.83 16 8 O -0.57 -8.92 12.53 -148.98 -1.87 -10.79 16 9 N -0.69 -15.54 4.96 -448.97 -2.23 -17.77 16 10 C 0.57 17.98 7.74 86.79 0.67 18.65 16 11 O -0.58 -22.88 16.01 -3.89 -0.06 -22.95 16 12 C -0.16 -5.22 5.87 -20.11 -0.12 -5.34 16 13 C -0.06 -1.59 9.54 22.57 0.22 -1.37 16 14 C -0.12 -3.10 10.02 22.21 0.22 -2.88 16 15 C -0.06 -2.24 9.79 22.48 0.22 -2.02 16 16 C -0.13 -5.81 5.45 22.65 0.12 -5.69 16 17 S -0.09 -5.18 21.41 -56.49 -1.21 -6.39 16 18 C -0.54 -31.72 9.46 67.94 0.64 -31.08 16 19 H 0.07 3.91 7.79 -2.91 -0.02 3.89 16 20 C 0.02 1.11 5.49 84.84 0.47 1.58 16 21 N -0.91 -55.00 13.22 21.64 0.29 -54.71 16 22 Si 0.99 45.00 29.55 68.60 2.03 47.03 16 23 H -0.26 -11.26 7.11 99.48 0.71 -10.56 16 24 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 25 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 26 C -0.04 -1.85 9.34 22.70 0.21 -1.64 16 27 C 0.07 1.32 10.50 85.23 0.89 2.22 16 28 N -0.33 -6.85 12.58 -57.02 -0.72 -7.57 16 29 H 0.08 0.41 8.14 -2.38 -0.02 0.39 16 30 H 0.12 0.07 8.14 -2.38 -0.02 0.05 16 31 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.21 1.38 8.06 -2.91 -0.02 1.36 16 33 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 34 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.39 3.21 9.12 -74.05 -0.68 2.53 16 36 H 0.41 7.24 5.66 -92.71 -0.52 6.71 16 37 H 0.17 2.49 6.40 -2.91 -0.02 2.48 16 38 H 0.17 2.82 8.06 -2.91 -0.02 2.79 16 39 H 0.13 4.59 8.06 -2.91 -0.02 4.57 16 40 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 41 H 0.10 5.11 7.65 -2.91 -0.02 5.08 16 42 H 0.19 2.89 7.72 -2.91 -0.02 2.87 16 Total: -1.00 -84.37 381.23 1.12 -83.25 By element: Atomic # 1 Polarization: 18.79 SS G_CDS: -0.12 Total: 18.67 kcal Atomic # 6 Polarization: -28.07 SS G_CDS: 6.49 Total: -21.58 kcal Atomic # 7 Polarization: -83.10 SS G_CDS: -4.14 Total: -87.24 kcal Atomic # 8 Polarization: -31.81 SS G_CDS: -1.93 Total: -33.74 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Atomic # 16 Polarization: -5.18 SS G_CDS: -1.21 Total: -6.39 kcal Total: -84.37 1.12 -83.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351463804.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.814 kcal (2) G-P(sol) polarization free energy of solvation -84.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds