Wall clock time and date at job start Wed Apr 1 2020 04:19:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.37095 * 119.99922 * 2 1 4 4 H 1.08003 * 120.00073 * 202.40348 * 3 2 1 5 5 C 1.38950 * 120.00104 * 22.40822 * 3 2 1 6 6 N 1.31413 * 119.99929 * 11.59665 * 5 3 2 7 7 Si 1.86797 * 120.00183 * 191.59542 * 5 3 2 8 8 H 1.48493 * 109.47372 * 59.99647 * 7 5 3 9 9 H 1.48496 * 109.47304 * 180.02562 * 7 5 3 10 10 H 1.48507 * 109.47116 * 300.00091 * 7 5 3 11 11 C 1.34781 * 119.99892 * 180.02562 * 2 1 3 12 12 O 1.21295 * 119.99706 * 179.97438 * 11 2 1 13 13 C 1.50698 * 120.00324 * 0.02562 * 11 2 1 14 14 C 1.53001 * 109.47184 * 180.02562 * 13 11 2 15 15 S 1.81396 * 109.46866 * 179.97438 * 14 13 11 16 16 C 1.81399 * 103.00039 * 179.97438 * 15 14 13 17 17 C 1.50692 * 109.47556 * 180.02562 * 16 15 14 18 18 N 1.32418 * 118.52856 * 269.99920 * 17 16 15 19 19 C 1.32396 * 121.52398 * 179.97438 * 18 17 16 20 20 O 1.35278 * 120.89452 * 180.02562 * 19 18 17 21 21 C 1.41421 * 118.21159 * 0.02562 * 19 18 17 22 22 C 1.40013 * 122.11885 * 180.02562 * 21 19 18 23 23 C 1.36345 * 119.49497 * 179.97438 * 22 21 19 24 24 C 1.39238 * 120.90962 * 0.02619 * 23 22 21 25 25 C 1.36287 * 121.04498 * 359.97438 * 24 23 22 26 26 C 1.40182 * 119.58213 * 359.97438 * 25 24 23 27 27 N 1.31152 * 118.52569 * 89.99702 * 17 16 15 28 28 H 1.09001 * 109.46826 * 272.15489 * 1 2 3 29 29 H 1.08997 * 109.47222 * 32.15730 * 1 2 3 30 30 H 1.09006 * 109.46946 * 152.16199 * 1 2 3 31 31 H 0.96997 * 120.00043 * 180.02562 * 6 5 3 32 32 H 1.08994 * 109.47339 * 59.99870 * 13 11 2 33 33 H 1.09009 * 109.46693 * 300.00011 * 13 11 2 34 34 H 1.09002 * 109.47039 * 59.99943 * 14 13 11 35 35 H 1.08996 * 109.46988 * 299.99709 * 14 13 11 36 36 H 1.09000 * 109.47348 * 59.99643 * 16 15 14 37 37 H 1.09000 * 109.47317 * 300.00274 * 16 15 14 38 38 H 0.96695 * 114.00166 * 269.98639 * 20 19 18 39 39 H 1.08001 * 120.25451 * 359.97438 * 22 21 19 40 40 H 1.08008 * 119.54362 * 180.02562 * 23 22 21 41 41 H 1.08000 * 119.47926 * 179.97438 * 24 23 22 42 42 H 1.07997 * 120.20964 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1693 1.2226 -0.3565 5 6 1.5344 2.3452 0.4587 6 7 0.3896 2.2707 1.0996 7 14 2.3335 4.0078 0.1644 8 1 2.4814 4.2344 -1.2956 9 1 1.4830 5.0760 0.7480 10 1 3.6718 4.0345 0.8075 11 6 2.1389 -1.1673 -0.0005 12 8 3.3518 -1.1672 -0.0010 13 6 1.3854 -2.4724 -0.0017 14 6 2.3797 -3.6353 -0.0014 15 16 1.4727 -5.2062 -0.0021 16 6 2.7993 -6.4434 -0.0025 17 6 2.1978 -7.8250 -0.0037 18 7 1.9450 -8.4057 1.1592 19 6 1.4168 -9.6178 1.2274 20 8 1.1632 -10.1988 2.4224 21 6 1.1247 -10.2888 0.0172 22 6 0.5649 -11.5719 -0.0062 23 6 0.3045 -12.1690 -1.2040 24 6 0.5881 -11.5205 -2.4030 25 6 1.1330 -10.2714 -2.4148 26 6 1.4129 -9.6270 -1.2017 27 7 1.9482 -8.3984 -1.1565 28 1 -0.3633 0.0386 1.0270 29 1 -0.3633 0.8700 -0.5470 30 1 -0.3633 -0.9088 -0.4799 31 1 -0.0407 3.0790 1.4195 32 1 0.7591 -2.5296 -0.8919 33 1 0.7584 -2.5307 0.8881 34 1 3.0057 -3.5779 0.8891 35 1 3.0070 -3.5771 -0.8909 36 1 3.4155 -6.3157 0.8875 37 1 3.4156 -6.3150 -0.8924 38 1 1.8992 -10.7208 2.7700 39 1 0.3411 -12.0849 0.9175 40 1 -0.1276 -13.1587 -1.2229 41 1 0.3728 -12.0152 -3.3386 42 1 1.3471 -9.7807 -3.3527 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352115441.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:52 Heat of formation + Delta-G solvation = 3.906720 kcal Electronic energy + Delta-G solvation = -25838.733142 eV Core-core repulsion = 21911.142452 eV Total energy + Delta-G solvation = -3927.590690 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.88205 -38.50873 -38.47749 -38.12810 -34.76132 -33.64826 -32.45221 -32.30457 -31.38727 -31.34431 -28.69496 -26.42883 -25.13987 -24.99525 -23.72157 -22.88816 -22.69485 -19.45314 -19.05932 -18.68956 -18.23196 -16.90361 -16.79570 -16.35200 -15.94275 -15.59423 -15.37690 -15.16391 -14.94610 -14.60907 -14.50314 -14.13330 -13.97631 -13.64093 -13.23891 -13.05058 -13.02596 -12.59941 -12.55254 -12.11137 -11.88529 -11.81635 -11.62443 -11.37246 -11.21426 -11.14860 -10.97065 -10.84000 -10.80840 -10.39190 -10.20382 -9.93791 -9.69364 -9.64548 -9.00506 -8.76083 -8.39740 -7.67450 -7.54279 -6.29253 -3.86227 -0.32361 0.16973 1.31083 1.59386 2.50964 2.67715 2.79654 3.20222 3.25769 3.29854 3.46347 3.60367 3.83228 3.90068 4.10197 4.16111 4.28532 4.45450 4.65421 4.75322 4.88364 4.91681 5.10564 5.13662 5.19495 5.34954 5.38148 5.40443 5.45561 5.61252 5.78725 5.80529 5.86864 6.02805 6.15185 6.23194 6.33241 6.43296 6.58363 6.84298 6.91389 7.26041 7.58107 7.70344 8.13812 8.49507 9.19585 9.44012 9.98816 10.74242 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.028555 B = 0.001700 C = 0.001677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.319155 B =16466.857449 C =16693.671448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.111 3.889 2 N -0.444 5.444 3 C -0.307 4.307 4 H 0.098 0.902 5 C 0.029 3.971 6 N -0.883 5.883 7 Si 0.928 3.072 8 H -0.274 1.274 9 H -0.284 1.284 10 H -0.273 1.273 11 C 0.450 3.550 12 O -0.593 6.593 13 C -0.114 4.114 14 C -0.056 4.056 15 S -0.238 6.238 16 C -0.028 4.028 17 C 0.370 3.630 18 N -0.529 5.529 19 C 0.408 3.592 20 O -0.467 6.467 21 C -0.178 4.178 22 C -0.068 4.068 23 C -0.124 4.124 24 C -0.077 4.077 25 C -0.100 4.100 26 C 0.174 3.826 27 N -0.494 5.494 28 H 0.059 0.941 29 H 0.069 0.931 30 H 0.028 0.972 31 H 0.268 0.732 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.111 0.889 37 H 0.112 0.888 38 H 0.411 0.589 39 H 0.139 0.861 40 H 0.133 0.867 41 H 0.136 0.864 42 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.519 -30.603 -3.371 30.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 N -0.163 5.163 3 C -0.435 4.435 4 H 0.116 0.884 5 C -0.174 4.174 6 N -0.522 5.522 7 Si 0.755 3.245 8 H -0.199 1.199 9 H -0.210 1.210 10 H -0.198 1.198 11 C 0.237 3.763 12 O -0.479 6.479 13 C -0.156 4.156 14 C -0.205 4.205 15 S -0.012 6.012 16 C -0.177 4.177 17 C 0.101 3.899 18 N -0.254 5.254 19 C 0.207 3.793 20 O -0.275 6.275 21 C -0.185 4.185 22 C -0.089 4.089 23 C -0.142 4.142 24 C -0.098 4.098 25 C -0.119 4.119 26 C 0.046 3.954 27 N -0.210 5.210 28 H 0.077 0.923 29 H 0.087 0.913 30 H 0.046 0.954 31 H 0.078 0.922 32 H 0.104 0.896 33 H 0.106 0.894 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.129 0.871 37 H 0.130 0.870 38 H 0.272 0.728 39 H 0.157 0.843 40 H 0.151 0.849 41 H 0.154 0.846 42 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -2.302 -29.439 -3.425 29.727 hybrid contribution 1.350 0.045 0.245 1.373 sum -0.952 -29.395 -3.180 29.581 Atomic orbital electron populations 1.21536 0.81008 0.98907 1.01832 1.43572 1.05614 1.04702 1.62375 1.19619 0.99497 0.83806 1.40532 0.88388 1.25356 0.96522 1.00106 0.95370 1.69995 1.17329 1.29400 1.35524 0.85970 0.78997 0.80819 0.78731 1.19922 1.20951 1.19801 1.19828 0.87917 0.84535 0.84055 1.90509 1.13923 1.87152 1.56312 1.21242 0.98074 0.92317 1.03923 1.23150 0.99865 0.90972 1.06514 1.86944 1.14727 1.01300 1.98194 1.21979 0.99296 0.88980 1.07471 1.21845 0.91132 0.94635 0.82275 1.67655 1.15647 1.11019 1.31067 1.19559 0.87528 0.87308 0.84897 1.84652 1.42222 1.67813 1.32779 1.19630 1.06532 0.98023 0.94285 1.20890 0.95985 0.92671 0.99324 1.21033 1.00324 1.00745 0.92094 1.21105 0.95602 0.94220 0.98900 1.20805 0.99509 0.94886 0.96707 1.18931 0.93862 0.89733 0.92832 1.68609 1.14480 1.09081 1.28812 0.92287 0.91253 0.95371 0.92191 0.89642 0.89432 0.89156 0.89212 0.87074 0.86998 0.72817 0.84344 0.84876 0.84576 0.83770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.53 8.52 59.85 0.51 3.04 16 2 N -0.44 -11.58 3.02 -122.19 -0.37 -11.94 16 3 C -0.31 -8.66 9.29 -14.93 -0.14 -8.80 16 4 H 0.10 2.88 7.41 -52.48 -0.39 2.49 16 5 C 0.03 0.79 5.11 -17.47 -0.09 0.70 16 6 N -0.88 -23.84 10.62 55.50 0.59 -23.25 16 7 Si 0.93 21.00 29.57 -169.99 -5.03 15.97 16 8 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 9 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 10 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 11 C 0.45 11.04 7.63 -10.98 -0.08 10.95 16 12 O -0.59 -16.34 15.67 5.54 0.09 -16.26 16 13 C -0.11 -2.14 4.23 -27.88 -0.12 -2.26 16 14 C -0.06 -0.95 5.23 37.16 0.19 -0.76 16 15 S -0.24 -3.66 21.72 -107.50 -2.33 -6.00 16 16 C -0.03 -0.36 6.34 36.00 0.23 -0.13 16 17 C 0.37 4.98 6.88 -157.21 -1.08 3.89 16 18 N -0.53 -6.94 10.30 -10.41 -0.11 -7.05 16 19 C 0.41 4.34 7.89 -16.10 -0.13 4.22 16 20 O -0.47 -3.59 12.94 -17.53 -0.23 -3.81 16 21 C -0.18 -1.75 5.75 -106.72 -0.61 -2.36 16 22 C -0.07 -0.45 9.61 -39.60 -0.38 -0.83 16 23 C -0.12 -0.65 9.96 -39.89 -0.40 -1.05 16 24 C -0.08 -0.44 9.95 -39.91 -0.40 -0.83 16 25 C -0.10 -0.83 10.01 -39.55 -0.40 -1.23 16 26 C 0.17 1.94 6.61 -84.85 -0.56 1.38 16 27 N -0.49 -6.51 10.32 -8.80 -0.09 -6.60 16 28 H 0.06 1.39 7.54 -51.93 -0.39 1.00 16 29 H 0.07 1.65 7.06 -51.93 -0.37 1.28 16 30 H 0.03 0.53 6.36 -51.93 -0.33 0.20 16 31 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 32 H 0.09 1.49 7.41 -51.93 -0.38 1.10 16 33 H 0.09 1.59 8.11 -51.92 -0.42 1.17 16 34 H 0.09 1.56 8.10 -51.92 -0.42 1.14 16 35 H 0.09 1.52 8.10 -51.93 -0.42 1.10 16 36 H 0.11 1.31 8.14 -51.92 -0.42 0.89 16 37 H 0.11 1.30 8.14 -51.92 -0.42 0.88 16 38 H 0.41 0.84 9.06 45.56 0.41 1.25 16 39 H 0.14 0.60 7.72 -52.49 -0.41 0.19 16 40 H 0.13 0.33 8.06 -52.48 -0.42 -0.09 16 41 H 0.14 0.38 8.06 -52.49 -0.42 -0.04 16 42 H 0.14 1.04 8.06 -52.49 -0.42 0.61 16 LS Contribution 374.12 15.07 5.64 5.64 Total: -1.00 -35.36 374.12 -9.66 -45.02 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: -4.37 Total: 2.34 kcal Atomic # 6 Polarization: 9.39 SS G_CDS: -3.45 Total: 5.94 kcal Atomic # 7 Polarization: -48.86 SS G_CDS: 0.02 Total: -48.84 kcal Atomic # 8 Polarization: -19.93 SS G_CDS: -0.14 Total: -20.07 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.03 Total: 15.97 kcal Atomic # 16 Polarization: -3.66 SS G_CDS: -2.33 Total: -6.00 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -35.36 -9.66 -45.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352115441.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.926 kcal (2) G-P(sol) polarization free energy of solvation -35.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds