Wall clock time and date at job start Wed Apr 1 2020 04:19:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.37095 * 119.99922 * 2 1 4 4 H 1.08003 * 120.00073 * 202.40348 * 3 2 1 5 5 C 1.38950 * 120.00104 * 22.40822 * 3 2 1 6 6 N 1.31413 * 119.99929 * 11.59665 * 5 3 2 7 7 Si 1.86797 * 120.00183 * 191.59542 * 5 3 2 8 8 H 1.48493 * 109.47372 * 59.99647 * 7 5 3 9 9 H 1.48496 * 109.47304 * 180.02562 * 7 5 3 10 10 H 1.48507 * 109.47116 * 300.00091 * 7 5 3 11 11 C 1.34781 * 119.99892 * 180.02562 * 2 1 3 12 12 O 1.21295 * 119.99706 * 179.97438 * 11 2 1 13 13 C 1.50698 * 120.00324 * 0.02562 * 11 2 1 14 14 C 1.53001 * 109.47184 * 180.02562 * 13 11 2 15 15 S 1.81396 * 109.46866 * 179.97438 * 14 13 11 16 16 C 1.81399 * 103.00039 * 179.97438 * 15 14 13 17 17 C 1.50692 * 109.47556 * 180.02562 * 16 15 14 18 18 N 1.32418 * 118.52856 * 269.99920 * 17 16 15 19 19 C 1.32396 * 121.52398 * 179.97438 * 18 17 16 20 20 O 1.35278 * 120.89452 * 180.02562 * 19 18 17 21 21 C 1.41421 * 118.21159 * 0.02562 * 19 18 17 22 22 C 1.40013 * 122.11885 * 180.02562 * 21 19 18 23 23 C 1.36345 * 119.49497 * 179.97438 * 22 21 19 24 24 C 1.39238 * 120.90962 * 0.02619 * 23 22 21 25 25 C 1.36287 * 121.04498 * 359.97438 * 24 23 22 26 26 C 1.40182 * 119.58213 * 359.97438 * 25 24 23 27 27 N 1.31152 * 118.52569 * 89.99702 * 17 16 15 28 28 H 1.09001 * 109.46826 * 272.15489 * 1 2 3 29 29 H 1.08997 * 109.47222 * 32.15730 * 1 2 3 30 30 H 1.09006 * 109.46946 * 152.16199 * 1 2 3 31 31 H 0.96997 * 120.00043 * 180.02562 * 6 5 3 32 32 H 1.08994 * 109.47339 * 59.99870 * 13 11 2 33 33 H 1.09009 * 109.46693 * 300.00011 * 13 11 2 34 34 H 1.09002 * 109.47039 * 59.99943 * 14 13 11 35 35 H 1.08996 * 109.46988 * 299.99709 * 14 13 11 36 36 H 1.09000 * 109.47348 * 59.99643 * 16 15 14 37 37 H 1.09000 * 109.47317 * 300.00274 * 16 15 14 38 38 H 0.96695 * 114.00166 * 269.98639 * 20 19 18 39 39 H 1.08001 * 120.25451 * 359.97438 * 22 21 19 40 40 H 1.08008 * 119.54362 * 180.02562 * 23 22 21 41 41 H 1.08000 * 119.47926 * 179.97438 * 24 23 22 42 42 H 1.07997 * 120.20964 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1693 1.2226 -0.3565 5 6 1.5344 2.3452 0.4587 6 7 0.3896 2.2707 1.0996 7 14 2.3335 4.0078 0.1644 8 1 2.4814 4.2344 -1.2956 9 1 1.4830 5.0760 0.7480 10 1 3.6718 4.0345 0.8075 11 6 2.1389 -1.1673 -0.0005 12 8 3.3518 -1.1672 -0.0010 13 6 1.3854 -2.4724 -0.0017 14 6 2.3797 -3.6353 -0.0014 15 16 1.4727 -5.2062 -0.0021 16 6 2.7993 -6.4434 -0.0025 17 6 2.1978 -7.8250 -0.0037 18 7 1.9450 -8.4057 1.1592 19 6 1.4168 -9.6178 1.2274 20 8 1.1632 -10.1988 2.4224 21 6 1.1247 -10.2888 0.0172 22 6 0.5649 -11.5719 -0.0062 23 6 0.3045 -12.1690 -1.2040 24 6 0.5881 -11.5205 -2.4030 25 6 1.1330 -10.2714 -2.4148 26 6 1.4129 -9.6270 -1.2017 27 7 1.9482 -8.3984 -1.1565 28 1 -0.3633 0.0386 1.0270 29 1 -0.3633 0.8700 -0.5470 30 1 -0.3633 -0.9088 -0.4799 31 1 -0.0407 3.0790 1.4195 32 1 0.7591 -2.5296 -0.8919 33 1 0.7584 -2.5307 0.8881 34 1 3.0057 -3.5779 0.8891 35 1 3.0070 -3.5771 -0.8909 36 1 3.4155 -6.3157 0.8875 37 1 3.4156 -6.3150 -0.8924 38 1 1.8992 -10.7208 2.7700 39 1 0.3411 -12.0849 0.9175 40 1 -0.1276 -13.1587 -1.2229 41 1 0.3728 -12.0152 -3.3386 42 1 1.3471 -9.7807 -3.3527 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352115441.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:51 Heat of formation + Delta-G solvation = -21.552128 kcal Electronic energy + Delta-G solvation = -25839.837120 eV Core-core repulsion = 21911.142452 eV Total energy + Delta-G solvation = -3928.694668 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.59443 -40.41939 -39.09874 -38.79808 -36.76414 -34.37567 -34.05363 -33.28318 -33.17720 -31.99229 -29.47894 -28.36220 -26.90669 -25.70096 -25.04085 -24.07418 -23.29028 -20.62198 -20.05993 -19.76735 -18.92136 -18.81353 -18.15113 -17.56360 -16.94945 -16.80434 -16.58851 -16.36833 -15.99624 -15.93368 -15.64110 -15.21135 -15.06798 -14.81782 -14.69323 -14.23578 -13.84146 -13.65393 -13.55065 -13.38349 -13.29881 -13.10088 -13.03532 -12.84243 -12.64712 -12.60366 -12.45392 -12.20944 -12.11739 -11.95237 -11.69007 -11.13275 -11.02584 -10.48589 -10.40790 -10.30386 -9.71620 -9.38727 -8.75944 -8.33392 -5.99593 -1.01073 -0.53424 0.46456 0.73512 1.38303 1.38937 1.41044 1.51855 1.92168 1.99258 2.11833 2.28157 2.65894 2.89864 3.08541 3.10572 3.14524 3.48849 3.65925 3.82581 3.95359 3.97956 4.01443 4.09866 4.14854 4.25251 4.38772 4.45172 4.45938 4.70266 4.76684 4.77451 4.90445 4.90784 5.04249 5.14182 5.17125 5.36573 5.38023 5.43901 5.64411 5.88890 6.07516 6.40663 6.45845 6.88997 7.14365 7.44829 7.99506 8.68169 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.028555 B = 0.001700 C = 0.001677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.319155 B =16466.857449 C =16693.671448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.121 3.879 2 N -0.462 5.462 3 C -0.346 4.346 4 H 0.074 0.926 5 C -0.005 4.005 6 N -0.897 5.897 7 Si 0.992 3.008 8 H -0.267 1.267 9 H -0.270 1.270 10 H -0.276 1.276 11 C 0.442 3.558 12 O -0.632 6.632 13 C -0.100 4.100 14 C -0.049 4.049 15 S -0.245 6.245 16 C -0.019 4.019 17 C 0.349 3.651 18 N -0.560 5.560 19 C 0.408 3.592 20 O -0.468 6.468 21 C -0.188 4.188 22 C -0.072 4.072 23 C -0.111 4.111 24 C -0.060 4.060 25 C -0.122 4.122 26 C 0.142 3.858 27 N -0.514 5.514 28 H 0.047 0.953 29 H 0.054 0.946 30 H 0.068 0.932 31 H 0.274 0.726 32 H 0.106 0.894 33 H 0.098 0.902 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.117 0.883 37 H 0.119 0.881 38 H 0.434 0.566 39 H 0.163 0.837 40 H 0.172 0.828 41 H 0.171 0.829 42 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.951 -33.376 -3.902 33.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.022 4.022 2 N -0.180 5.180 3 C -0.474 4.474 4 H 0.092 0.908 5 C -0.206 4.206 6 N -0.536 5.536 7 Si 0.815 3.185 8 H -0.192 1.192 9 H -0.194 1.194 10 H -0.202 1.202 11 C 0.230 3.770 12 O -0.520 6.520 13 C -0.141 4.141 14 C -0.198 4.198 15 S -0.018 6.018 16 C -0.168 4.168 17 C 0.080 3.920 18 N -0.287 5.287 19 C 0.207 3.793 20 O -0.279 6.279 21 C -0.194 4.194 22 C -0.092 4.092 23 C -0.129 4.129 24 C -0.081 4.081 25 C -0.141 4.141 26 C 0.016 3.984 27 N -0.231 5.231 28 H 0.065 0.935 29 H 0.073 0.927 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.124 0.876 33 H 0.117 0.883 34 H 0.099 0.901 35 H 0.104 0.896 36 H 0.135 0.865 37 H 0.137 0.863 38 H 0.299 0.701 39 H 0.181 0.819 40 H 0.189 0.811 41 H 0.189 0.811 42 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -3.760 -32.249 -3.944 32.706 hybrid contribution 1.740 0.613 0.402 1.888 sum -2.019 -31.636 -3.542 31.898 Atomic orbital electron populations 1.21479 0.79266 1.00219 1.01285 1.43852 1.06848 1.04709 1.62617 1.19614 0.99319 0.85730 1.42703 0.90848 1.26137 0.97023 1.02992 0.94477 1.70073 1.17869 1.30545 1.35093 0.85023 0.77939 0.76629 0.78900 1.19165 1.19419 1.20171 1.20759 0.87852 0.85972 0.82428 1.90471 1.15881 1.88014 1.57617 1.21124 0.97999 0.89702 1.05289 1.22932 0.99375 0.91608 1.05886 1.86861 1.15885 1.00858 1.98225 1.21980 0.98291 0.88380 1.08159 1.21724 0.92687 0.94835 0.82782 1.67606 1.17435 1.12543 1.31078 1.19765 0.86608 0.86885 0.86038 1.84607 1.43530 1.67969 1.31819 1.19826 1.06881 0.99292 0.93388 1.21241 0.95319 0.91403 1.01228 1.21542 0.98327 1.01908 0.91137 1.21575 0.92882 0.92854 1.00788 1.21010 1.00929 0.96226 0.95908 1.19383 0.94897 0.89610 0.94528 1.68546 1.15187 1.10479 1.28856 0.93455 0.92734 0.91383 0.91654 0.87626 0.88335 0.90103 0.89635 0.86484 0.86252 0.70144 0.81912 0.81057 0.81107 0.83567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.48 8.52 127.77 1.09 6.57 16 2 N -0.46 -24.56 3.02 -658.88 -1.99 -26.54 16 3 C -0.35 -20.10 9.29 84.04 0.78 -19.32 16 4 H 0.07 4.52 7.41 -2.91 -0.02 4.50 16 5 C 0.00 -0.25 5.11 84.93 0.43 0.19 16 6 N -0.90 -48.51 10.62 21.66 0.23 -48.28 16 7 Si 0.99 43.23 29.57 68.60 2.03 45.26 16 8 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 9 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 10 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 11 C 0.44 22.12 7.63 87.66 0.67 22.79 16 12 O -0.63 -36.08 15.67 -3.08 -0.05 -36.13 16 13 C -0.10 -3.74 4.23 29.85 0.13 -3.62 16 14 C -0.05 -1.68 5.23 71.98 0.38 -1.31 16 15 S -0.24 -7.56 21.72 -56.49 -1.23 -8.79 16 16 C -0.02 -0.50 6.34 71.23 0.45 -0.05 16 17 C 0.35 9.66 6.88 138.75 0.96 10.62 16 18 N -0.56 -14.98 10.30 -299.85 -3.09 -18.07 16 19 C 0.41 8.49 7.89 85.39 0.67 9.16 16 20 O -0.47 -6.57 12.94 -85.63 -1.11 -7.68 16 21 C -0.19 -3.47 5.75 -21.22 -0.12 -3.60 16 22 C -0.07 -0.73 9.61 22.26 0.21 -0.52 16 23 C -0.11 -0.69 9.96 22.07 0.22 -0.47 16 24 C -0.06 -0.47 9.95 22.06 0.22 -0.25 16 25 C -0.12 -1.86 10.01 22.29 0.22 -1.64 16 26 C 0.14 3.13 6.61 40.11 0.27 3.39 16 27 N -0.51 -13.90 10.32 -181.75 -1.88 -15.77 16 28 H 0.05 2.24 7.54 -2.39 -0.02 2.22 16 29 H 0.05 2.60 7.06 -2.39 -0.02 2.59 16 30 H 0.07 2.49 6.36 -2.38 -0.02 2.48 16 31 H 0.27 13.87 8.31 -92.71 -0.77 13.10 16 32 H 0.11 3.54 7.41 -2.39 -0.02 3.52 16 33 H 0.10 3.50 8.11 -2.38 -0.02 3.48 16 34 H 0.08 2.88 8.10 -2.39 -0.02 2.86 16 35 H 0.08 2.96 8.10 -2.39 -0.02 2.94 16 36 H 0.12 2.88 8.14 -2.39 -0.02 2.86 16 37 H 0.12 2.89 8.14 -2.39 -0.02 2.87 16 38 H 0.43 1.09 9.06 -74.06 -0.67 0.42 16 39 H 0.16 0.80 7.72 -2.91 -0.02 0.77 16 40 H 0.17 -0.18 8.06 -2.91 -0.02 -0.21 16 41 H 0.17 0.14 8.06 -2.91 -0.02 0.11 16 42 H 0.15 2.02 8.06 -2.91 -0.02 2.00 16 Total: -1.00 -79.77 374.12 -0.10 -79.87 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: 0.40 Total: 14.18 kcal Atomic # 6 Polarization: 15.39 SS G_CDS: 6.57 Total: 21.97 kcal Atomic # 7 Polarization: -101.95 SS G_CDS: -6.72 Total: -108.67 kcal Atomic # 8 Polarization: -42.66 SS G_CDS: -1.16 Total: -43.81 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Atomic # 16 Polarization: -7.56 SS G_CDS: -1.23 Total: -8.79 kcal Total: -79.77 -0.10 -79.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352115441.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.318 kcal (2) G-P(sol) polarization free energy of solvation -79.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds