Wall clock time and date at job start Wed Apr 1 2020 04:26:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42900 * 113.99937 * 2 1 4 4 C 1.50700 * 109.47188 * 179.97438 * 3 2 1 5 5 N 1.28922 * 121.20219 * 179.97438 * 4 3 2 6 6 C 1.33507 * 117.04892 * 180.02562 * 5 4 3 7 7 N 1.34221 * 127.41281 * 179.97438 * 6 5 4 8 8 C 1.32412 * 120.00190 * 179.97438 * 7 6 5 9 9 O 1.21692 * 119.99670 * 0.02562 * 8 7 6 10 10 C 1.50704 * 119.99880 * 180.02562 * 8 7 6 11 11 C 1.53005 * 109.46798 * 180.02562 * 10 8 7 12 12 H 1.09000 * 109.46750 * 54.99975 * 11 10 8 13 13 C 1.50696 * 109.47117 * 295.00091 * 11 10 8 14 14 H 1.08002 * 120.00439 * 325.85670 * 13 11 10 15 15 C 1.37885 * 120.00218 * 145.85689 * 13 11 10 16 16 N 1.31520 * 119.99538 * 6.11854 * 15 13 11 17 17 Si 1.86800 * 120.00282 * 186.12406 * 15 13 11 18 18 H 1.48497 * 109.46855 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.47188 * 119.99819 * 17 15 13 20 20 H 1.48500 * 109.46768 * 239.99817 * 17 15 13 21 21 C 1.50694 * 109.46966 * 174.99964 * 11 10 8 22 22 C 1.38246 * 119.99801 * 63.47057 * 21 11 10 23 23 C 1.38232 * 119.99527 * 179.78884 * 22 21 11 24 24 C 1.38237 * 120.00407 * 0.43700 * 23 22 21 25 25 C 1.38235 * 119.99897 * 359.81581 * 24 23 22 26 26 C 1.38231 * 119.99923 * 359.97438 * 25 24 23 27 27 S 1.72304 * 105.17512 * 0.26568 * 6 5 4 28 28 N 1.33509 * 121.20124 * 359.97438 * 4 3 2 29 29 H 0.97001 * 127.19104 * 359.97438 * 28 4 3 30 30 H 1.09000 * 109.46982 * 60.00386 * 1 2 3 31 31 H 1.09000 * 109.47219 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47635 * 300.00359 * 1 2 3 33 33 H 1.08997 * 109.47456 * 59.99518 * 3 2 1 34 34 H 1.08998 * 109.46796 * 299.99804 * 3 2 1 35 35 H 1.08990 * 109.47336 * 300.00255 * 10 8 7 36 36 H 1.09000 * 109.46874 * 60.00474 * 10 8 7 37 37 H 0.97001 * 119.99642 * 180.02562 * 16 15 13 38 38 H 1.07996 * 120.00045 * 359.97438 * 22 21 11 39 39 H 1.08004 * 119.99496 * 180.27344 * 23 22 21 40 40 H 1.07996 * 119.99928 * 179.83618 * 24 23 22 41 41 H 1.08000 * 120.00214 * 179.97438 * 25 24 23 42 42 H 1.08001 * 119.99971 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 7 4.2653 2.2331 0.0003 6 6 5.5851 2.0316 0.0003 7 7 6.5522 2.9624 -0.0005 8 6 7.8244 2.5954 0.0003 9 8 8.1168 1.4141 0.0012 10 6 8.9101 3.6405 0.0000 11 6 10.2779 2.9549 0.0003 12 1 10.3386 2.2648 -0.8413 13 6 10.4578 2.1935 1.2883 14 1 10.0342 2.5756 2.2053 15 6 11.1634 1.0088 1.2961 16 7 11.7808 0.6041 0.2076 17 14 11.2421 -0.0212 2.8524 18 1 10.4693 0.6488 3.9290 19 1 10.6616 -1.3624 2.5883 20 1 12.6574 -0.1692 3.2769 21 6 11.3612 3.9951 -0.1239 22 6 11.5287 4.9407 0.8706 23 6 12.5252 5.8922 0.7587 24 6 13.3484 5.9037 -0.3517 25 6 13.1776 4.9613 -1.3486 26 6 12.1839 4.0072 -1.2347 27 16 5.7800 0.3196 -0.0067 28 7 4.1118 -0.0065 0.0016 29 1 3.6845 -0.8773 0.0023 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.6885 1.8464 0.8899 34 1 1.6886 1.8463 -0.8900 35 1 8.8159 4.2621 -0.8904 36 1 8.8152 4.2632 0.8895 37 1 12.2768 -0.2295 0.2130 38 1 10.8829 4.9342 1.7362 39 1 12.6589 6.6282 1.5377 40 1 14.1253 6.6487 -0.4403 41 1 13.8205 4.9705 -2.2163 42 1 12.0507 3.2707 -2.0133 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356746245.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:50 Heat of formation + Delta-G solvation = 24.957313 kcal Electronic energy + Delta-G solvation = -26907.031798 eV Core-core repulsion = 22980.353930 eV Total energy + Delta-G solvation = -3926.677868 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.78616 -39.20616 -38.33236 -38.09354 -34.55698 -33.74971 -32.13496 -31.36847 -29.91592 -29.87901 -28.79799 -26.85356 -25.73594 -23.92289 -22.50979 -21.53555 -21.16709 -20.46099 -19.39087 -18.35982 -17.61197 -16.92104 -16.76316 -16.44822 -16.32186 -15.71953 -15.61237 -15.48817 -14.60234 -14.24423 -14.07046 -13.84875 -13.66250 -13.46739 -13.08463 -12.51372 -12.32722 -12.22785 -11.96448 -11.91867 -11.75329 -11.52681 -11.35581 -10.86453 -10.80940 -10.62507 -10.56074 -10.48923 -10.16072 -9.98425 -9.63644 -9.50148 -9.27181 -8.93136 -8.69802 -8.29715 -7.94209 -7.85346 -7.50607 -5.88398 -3.87228 0.32964 0.54522 1.52736 2.21412 2.39345 2.43996 2.50094 3.39091 3.45815 3.49692 3.63932 3.98870 4.11206 4.24403 4.55930 4.62676 4.67097 4.76455 4.79893 4.85247 5.08693 5.21794 5.49940 5.75292 5.83278 5.94143 6.19485 6.31229 6.33867 6.42564 6.43755 6.51441 6.58873 6.67946 6.94907 7.01516 7.07639 7.19073 7.40847 7.54250 7.63926 7.73616 7.93761 8.04373 8.14016 8.46599 8.97677 9.13384 9.74047 11.21721 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.014886 B = 0.002746 C = 0.002443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1880.485993 B =10192.605047 C =11457.913684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.398 6.398 3 C 0.125 3.875 4 C 0.395 3.605 5 N -0.533 5.533 6 C 0.374 3.626 7 N -0.562 5.562 8 C 0.478 3.522 9 O -0.484 6.484 10 C -0.095 4.095 11 C 0.075 3.925 12 H 0.071 0.929 13 C -0.491 4.491 14 H 0.051 0.949 15 C 0.078 3.922 16 N -0.881 5.881 17 Si 0.883 3.117 18 H -0.275 1.275 19 H -0.284 1.284 20 H -0.287 1.287 21 C -0.019 4.019 22 C -0.114 4.114 23 C -0.132 4.132 24 C -0.156 4.156 25 C -0.129 4.129 26 C -0.118 4.118 27 S 0.289 5.711 28 N -0.693 5.693 29 H 0.451 0.549 30 H 0.050 0.950 31 H 0.094 0.906 32 H 0.050 0.950 33 H 0.100 0.900 34 H 0.100 0.900 35 H 0.071 0.929 36 H 0.082 0.918 37 H 0.257 0.743 38 H 0.114 0.886 39 H 0.105 0.895 40 H 0.103 0.897 41 H 0.105 0.895 42 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.789 0.184 -2.379 20.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.317 6.317 3 C 0.044 3.956 4 C 0.109 3.891 5 N -0.269 5.269 6 C -0.005 4.005 7 N -0.315 5.315 8 C 0.263 3.737 9 O -0.360 6.360 10 C -0.135 4.135 11 C 0.056 3.944 12 H 0.089 0.911 13 C -0.528 4.528 14 H 0.069 0.931 15 C -0.125 4.125 16 N -0.518 5.518 17 Si 0.712 3.288 18 H -0.199 1.199 19 H -0.211 1.211 20 H -0.213 1.213 21 C -0.020 4.020 22 C -0.132 4.132 23 C -0.150 4.150 24 C -0.174 4.174 25 C -0.147 4.147 26 C -0.136 4.136 27 S 0.424 5.576 28 N -0.420 5.420 29 H 0.295 0.705 30 H 0.068 0.932 31 H 0.112 0.888 32 H 0.069 0.931 33 H 0.118 0.882 34 H 0.118 0.882 35 H 0.090 0.910 36 H 0.101 0.899 37 H 0.067 0.933 38 H 0.132 0.868 39 H 0.123 0.877 40 H 0.121 0.879 41 H 0.123 0.877 42 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -19.466 -0.132 -2.454 19.620 hybrid contribution -0.607 -1.246 0.982 1.699 sum -20.073 -1.378 -1.472 20.174 Atomic orbital electron populations 1.22833 0.78548 1.03687 1.00924 1.87708 1.21703 1.26461 1.95834 1.21101 0.83631 0.86072 1.04762 1.22803 0.97115 0.80629 0.88588 1.67352 1.02130 1.26124 1.31252 1.26085 0.92324 0.91826 0.90259 1.69157 1.00944 1.28849 1.32565 1.21852 0.86532 0.90301 0.74977 1.90614 1.83149 1.20106 1.42141 1.21441 0.94057 0.95931 1.02046 1.17916 0.85026 0.90907 1.00581 0.91108 1.20773 1.33694 1.05390 0.92985 0.93063 1.24805 0.94847 0.97209 0.95604 1.69936 1.32504 1.22092 1.27307 0.86677 0.77345 0.80728 0.84055 1.19930 1.21065 1.21329 1.20693 0.97325 0.92780 0.91198 1.20961 0.98261 0.95052 0.98924 1.20967 0.96895 0.99426 0.97683 1.20781 1.00700 1.00194 0.95723 1.20964 0.98704 0.96382 0.98629 1.21071 0.96181 0.97895 0.98495 1.87228 0.83450 1.10249 1.76648 1.48548 1.13728 1.11439 1.68273 0.70460 0.93152 0.88805 0.93141 0.88240 0.88226 0.91041 0.89943 0.93279 0.86838 0.87681 0.87863 0.87704 0.86893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.10 11.01 101.05 1.11 1.22 16 2 O -0.40 -2.29 9.78 -35.23 -0.34 -2.64 16 3 C 0.13 0.78 6.51 36.01 0.23 1.02 16 4 C 0.40 4.28 7.56 -158.09 -1.20 3.08 16 5 N -0.53 -7.96 10.56 -12.98 -0.14 -8.10 16 6 C 0.37 6.82 8.37 -88.54 -0.74 6.08 16 7 N -0.56 -11.80 10.53 -13.52 -0.14 -11.95 16 8 C 0.48 11.01 7.45 -12.03 -0.09 10.92 16 9 O -0.48 -12.23 12.52 5.20 0.07 -12.17 16 10 C -0.09 -2.10 5.02 -27.88 -0.14 -2.24 16 11 C 0.07 1.88 1.67 -92.93 -0.16 1.73 16 12 H 0.07 2.01 6.98 -51.93 -0.36 1.64 16 13 C -0.49 -13.63 6.36 -34.44 -0.22 -13.85 16 14 H 0.05 1.43 7.82 -52.49 -0.41 1.02 16 15 C 0.08 2.25 5.45 -17.81 -0.10 2.15 16 16 N -0.88 -26.18 12.87 55.43 0.71 -25.46 16 17 Si 0.88 22.54 29.54 -169.99 -5.02 17.51 16 18 H -0.27 -6.91 7.11 56.52 0.40 -6.51 16 19 H -0.28 -7.25 7.11 56.52 0.40 -6.84 16 20 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 21 C -0.02 -0.45 4.77 -104.62 -0.50 -0.95 16 22 C -0.11 -2.45 8.86 -39.58 -0.35 -2.80 16 23 C -0.13 -2.50 10.05 -39.58 -0.40 -2.90 16 24 C -0.16 -2.86 10.05 -39.58 -0.40 -3.25 16 25 C -0.13 -2.49 10.05 -39.58 -0.40 -2.89 16 26 C -0.12 -2.62 9.67 -39.58 -0.38 -3.00 16 27 S 0.29 4.61 20.97 -107.50 -2.25 2.36 16 28 N -0.69 -7.30 6.56 31.27 0.21 -7.10 16 29 H 0.45 3.39 8.21 -40.82 -0.34 3.06 16 30 H 0.05 0.10 8.14 -51.93 -0.42 -0.33 16 31 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 32 H 0.05 0.10 8.14 -51.93 -0.42 -0.32 16 33 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 36 H 0.08 1.76 7.78 -51.93 -0.40 1.36 16 37 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 38 H 0.11 2.37 7.76 -52.49 -0.41 1.97 16 39 H 0.11 1.69 8.06 -52.48 -0.42 1.27 16 40 H 0.10 1.58 8.06 -52.49 -0.42 1.16 16 41 H 0.10 1.74 8.06 -52.49 -0.42 1.32 16 42 H 0.11 2.51 7.95 -52.49 -0.42 2.09 16 LS Contribution 375.32 15.07 5.66 5.66 Total: -1.00 -35.37 375.32 -10.25 -45.63 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -5.28 Total: 1.95 kcal Atomic # 6 Polarization: -1.97 SS G_CDS: -3.72 Total: -5.68 kcal Atomic # 7 Polarization: -53.25 SS G_CDS: 0.64 Total: -52.61 kcal Atomic # 8 Polarization: -14.53 SS G_CDS: -0.28 Total: -14.81 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.51 kcal Atomic # 16 Polarization: 4.61 SS G_CDS: -2.25 Total: 2.36 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -35.37 -10.25 -45.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356746245.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.584 kcal (2) G-P(sol) polarization free energy of solvation -35.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds