Wall clock time and date at job start Wed Apr 1 2020 04:26:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42900 * 113.99937 * 2 1 4 4 C 1.50700 * 109.47188 * 179.97438 * 3 2 1 5 5 N 1.28922 * 121.20219 * 179.97438 * 4 3 2 6 6 C 1.33507 * 117.04892 * 180.02562 * 5 4 3 7 7 N 1.34221 * 127.41281 * 179.97438 * 6 5 4 8 8 C 1.32412 * 120.00190 * 179.97438 * 7 6 5 9 9 O 1.21692 * 119.99670 * 0.02562 * 8 7 6 10 10 C 1.50704 * 119.99880 * 180.02562 * 8 7 6 11 11 C 1.53005 * 109.46798 * 180.02562 * 10 8 7 12 12 H 1.09000 * 109.46750 * 54.99975 * 11 10 8 13 13 C 1.50696 * 109.47117 * 295.00091 * 11 10 8 14 14 H 1.08002 * 120.00439 * 325.85670 * 13 11 10 15 15 C 1.37885 * 120.00218 * 145.85689 * 13 11 10 16 16 N 1.31520 * 119.99538 * 6.11854 * 15 13 11 17 17 Si 1.86800 * 120.00282 * 186.12406 * 15 13 11 18 18 H 1.48497 * 109.46855 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.47188 * 119.99819 * 17 15 13 20 20 H 1.48500 * 109.46768 * 239.99817 * 17 15 13 21 21 C 1.50694 * 109.46966 * 174.99964 * 11 10 8 22 22 C 1.38246 * 119.99801 * 63.47057 * 21 11 10 23 23 C 1.38232 * 119.99527 * 179.78884 * 22 21 11 24 24 C 1.38237 * 120.00407 * 0.43700 * 23 22 21 25 25 C 1.38235 * 119.99897 * 359.81581 * 24 23 22 26 26 C 1.38231 * 119.99923 * 359.97438 * 25 24 23 27 27 S 1.72304 * 105.17512 * 0.26568 * 6 5 4 28 28 N 1.33509 * 121.20124 * 359.97438 * 4 3 2 29 29 H 0.97001 * 127.19104 * 359.97438 * 28 4 3 30 30 H 1.09000 * 109.46982 * 60.00386 * 1 2 3 31 31 H 1.09000 * 109.47219 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47635 * 300.00359 * 1 2 3 33 33 H 1.08997 * 109.47456 * 59.99518 * 3 2 1 34 34 H 1.08998 * 109.46796 * 299.99804 * 3 2 1 35 35 H 1.08990 * 109.47336 * 300.00255 * 10 8 7 36 36 H 1.09000 * 109.46874 * 60.00474 * 10 8 7 37 37 H 0.97001 * 119.99642 * 180.02562 * 16 15 13 38 38 H 1.07996 * 120.00045 * 359.97438 * 22 21 11 39 39 H 1.08004 * 119.99496 * 180.27344 * 23 22 21 40 40 H 1.07996 * 119.99928 * 179.83618 * 24 23 22 41 41 H 1.08000 * 120.00214 * 179.97438 * 25 24 23 42 42 H 1.08001 * 119.99971 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 7 4.2653 2.2331 0.0003 6 6 5.5851 2.0316 0.0003 7 7 6.5522 2.9624 -0.0005 8 6 7.8244 2.5954 0.0003 9 8 8.1168 1.4141 0.0012 10 6 8.9101 3.6405 0.0000 11 6 10.2779 2.9549 0.0003 12 1 10.3386 2.2648 -0.8413 13 6 10.4578 2.1935 1.2883 14 1 10.0342 2.5756 2.2053 15 6 11.1634 1.0088 1.2961 16 7 11.7808 0.6041 0.2076 17 14 11.2421 -0.0212 2.8524 18 1 10.4693 0.6488 3.9290 19 1 10.6616 -1.3624 2.5883 20 1 12.6574 -0.1692 3.2769 21 6 11.3612 3.9951 -0.1239 22 6 11.5287 4.9407 0.8706 23 6 12.5252 5.8922 0.7587 24 6 13.3484 5.9037 -0.3517 25 6 13.1776 4.9613 -1.3486 26 6 12.1839 4.0072 -1.2347 27 16 5.7800 0.3196 -0.0067 28 7 4.1118 -0.0065 0.0016 29 1 3.6845 -0.8773 0.0023 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.6885 1.8464 0.8899 34 1 1.6886 1.8463 -0.8900 35 1 8.8159 4.2621 -0.8904 36 1 8.8152 4.2632 0.8895 37 1 12.2768 -0.2295 0.2130 38 1 10.8829 4.9342 1.7362 39 1 12.6589 6.6282 1.5377 40 1 14.1253 6.6487 -0.4403 41 1 13.8205 4.9705 -2.2163 42 1 12.0507 3.2707 -2.0133 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356746245.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:50 Heat of formation + Delta-G solvation = 0.509097 kcal Electronic energy + Delta-G solvation = -26908.091952 eV Core-core repulsion = 22980.353930 eV Total energy + Delta-G solvation = -3927.738022 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.87816 -40.82072 -39.74804 -38.79519 -36.12719 -35.38196 -33.57055 -33.29018 -31.49093 -30.71177 -30.25759 -27.85006 -27.07402 -25.36797 -24.03546 -23.11826 -22.32330 -21.86494 -20.99137 -19.75929 -18.67117 -18.47952 -18.08379 -17.60590 -17.26604 -17.02763 -16.69627 -16.50769 -16.35910 -15.93063 -15.66505 -15.37826 -15.25327 -14.35930 -14.21832 -14.01451 -13.72582 -13.61017 -13.41670 -13.26362 -12.95148 -12.89234 -12.77101 -12.53987 -12.43215 -12.37766 -12.12632 -11.81704 -11.68809 -11.31448 -11.19031 -11.02329 -10.89390 -10.67478 -10.45666 -10.21955 -9.52815 -9.27023 -9.17969 -8.03844 -6.06659 -0.93735 -0.66867 0.21751 0.79409 0.85622 0.99402 1.34368 1.36414 1.45964 1.72741 2.38866 2.46185 2.71329 3.08363 3.20016 3.35710 3.45195 3.84615 4.22025 4.27365 4.27658 4.36636 4.45384 4.56193 4.58395 4.63601 4.65133 4.71152 4.86236 4.95044 4.95751 5.03172 5.30411 5.39977 5.52756 5.58537 5.64696 5.68938 5.79493 5.84598 5.92718 5.97292 6.18267 6.34714 6.43310 6.48397 6.99514 7.38538 7.55555 9.06056 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.014886 B = 0.002746 C = 0.002443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1880.485993 B =10192.605047 C =11457.913684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.413 6.413 3 C 0.130 3.870 4 C 0.409 3.591 5 N -0.551 5.551 6 C 0.370 3.630 7 N -0.595 5.595 8 C 0.475 3.525 9 O -0.531 6.531 10 C -0.088 4.088 11 C 0.083 3.917 12 H 0.027 0.973 13 C -0.487 4.487 14 H 0.042 0.958 15 C 0.027 3.973 16 N -0.914 5.914 17 Si 0.934 3.066 18 H -0.270 1.270 19 H -0.285 1.285 20 H -0.280 1.280 21 C -0.047 4.047 22 C -0.129 4.129 23 C -0.126 4.126 24 C -0.146 4.146 25 C -0.127 4.127 26 C -0.142 4.142 27 S 0.272 5.728 28 N -0.662 5.662 29 H 0.468 0.532 30 H 0.062 0.938 31 H 0.102 0.898 32 H 0.061 0.939 33 H 0.123 0.877 34 H 0.125 0.875 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.255 0.745 38 H 0.111 0.889 39 H 0.141 0.859 40 H 0.146 0.854 41 H 0.134 0.866 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.569 1.249 -1.682 22.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.332 6.332 3 C 0.050 3.950 4 C 0.124 3.876 5 N -0.287 5.287 6 C -0.008 4.008 7 N -0.352 5.352 8 C 0.260 3.740 9 O -0.409 6.409 10 C -0.128 4.128 11 C 0.064 3.936 12 H 0.045 0.955 13 C -0.525 4.525 14 H 0.060 0.940 15 C -0.172 4.172 16 N -0.553 5.553 17 Si 0.761 3.239 18 H -0.194 1.194 19 H -0.212 1.212 20 H -0.206 1.206 21 C -0.048 4.048 22 C -0.147 4.147 23 C -0.144 4.144 24 C -0.164 4.164 25 C -0.145 4.145 26 C -0.160 4.160 27 S 0.408 5.592 28 N -0.389 5.389 29 H 0.317 0.683 30 H 0.080 0.920 31 H 0.120 0.880 32 H 0.080 0.920 33 H 0.141 0.859 34 H 0.142 0.858 35 H 0.101 0.899 36 H 0.106 0.894 37 H 0.064 0.936 38 H 0.129 0.871 39 H 0.159 0.841 40 H 0.163 0.837 41 H 0.152 0.848 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -21.347 0.864 -1.747 21.435 hybrid contribution -0.377 -1.631 0.713 1.820 sum -21.723 -0.768 -1.034 21.762 Atomic orbital electron populations 1.23046 0.76722 1.04698 1.02067 1.87682 1.23497 1.25955 1.96070 1.21350 0.79815 0.86957 1.06928 1.23705 0.98969 0.79385 0.85493 1.67370 1.00685 1.27840 1.32776 1.26298 0.93224 0.92218 0.89052 1.69073 1.00381 1.29780 1.35984 1.21887 0.87592 0.89778 0.74697 1.90591 1.84147 1.21182 1.45001 1.21304 0.92809 0.95929 1.02789 1.17656 0.87405 0.90925 0.97601 0.95461 1.20957 1.32343 1.05675 0.93514 0.93995 1.25456 0.95180 0.98455 0.98073 1.70068 1.33918 1.22417 1.28944 0.85872 0.77518 0.79232 0.81258 1.19419 1.21173 1.20609 1.20552 0.97493 0.93790 0.92928 1.21031 0.99586 0.95716 0.98392 1.21362 0.95436 0.98855 0.98748 1.21267 1.00745 1.00003 0.94405 1.21290 0.97764 0.95398 1.00047 1.21090 0.97694 0.99037 0.98217 1.87296 0.86677 1.09554 1.75650 1.48424 1.11265 1.12597 1.66655 0.68272 0.91976 0.87959 0.92041 0.85908 0.85775 0.89863 0.89376 0.93639 0.87110 0.84134 0.83652 0.84798 0.88686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.07 11.01 113.37 1.25 1.31 16 2 O -0.41 -3.29 9.78 -148.98 -1.46 -4.74 16 3 C 0.13 1.15 6.51 71.24 0.46 1.62 16 4 C 0.41 7.98 7.56 139.06 1.05 9.03 16 5 N -0.55 -15.94 10.56 -194.97 -2.06 -18.00 16 6 C 0.37 13.78 8.37 179.62 1.50 15.28 16 7 N -0.59 -26.12 10.53 -316.21 -3.33 -29.45 16 8 C 0.48 23.25 7.45 88.02 0.66 23.90 16 9 O -0.53 -28.61 12.52 -4.32 -0.05 -28.66 16 10 C -0.09 -4.17 5.02 29.85 0.15 -4.02 16 11 C 0.08 4.47 1.67 -12.29 -0.02 4.45 16 12 H 0.03 1.67 6.98 -2.39 -0.02 1.66 16 13 C -0.49 -28.35 6.36 25.60 0.16 -28.19 16 14 H 0.04 2.45 7.82 -2.91 -0.02 2.43 16 15 C 0.03 1.63 5.45 84.66 0.46 2.09 16 16 N -0.91 -57.09 12.87 21.45 0.28 -56.81 16 17 Si 0.93 47.67 29.54 68.60 2.03 49.69 16 18 H -0.27 -13.37 7.11 99.48 0.71 -12.67 16 19 H -0.29 -14.46 7.11 99.48 0.71 -13.75 16 20 H -0.28 -13.85 7.11 99.48 0.71 -13.14 16 21 C -0.05 -2.29 4.77 -19.86 -0.09 -2.38 16 22 C -0.13 -5.56 8.86 22.27 0.20 -5.36 16 23 C -0.13 -4.48 10.05 22.27 0.22 -4.26 16 24 C -0.15 -4.88 10.05 22.27 0.22 -4.66 16 25 C -0.13 -4.74 10.05 22.27 0.22 -4.51 16 26 C -0.14 -6.50 9.67 22.27 0.22 -6.28 16 27 S 0.27 8.81 20.97 -56.49 -1.18 7.63 16 28 N -0.66 -12.80 6.56 -54.99 -0.36 -13.16 16 29 H 0.47 5.90 8.21 -92.71 -0.76 5.14 16 30 H 0.06 0.01 8.14 -2.39 -0.02 -0.01 16 31 H 0.10 0.08 8.14 -2.39 -0.02 0.06 16 32 H 0.06 0.02 8.14 -2.39 -0.02 0.00 16 33 H 0.12 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.12 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.08 3.62 8.14 -2.39 -0.02 3.60 16 36 H 0.09 3.97 7.78 -2.39 -0.02 3.95 16 37 H 0.25 15.24 8.31 -92.71 -0.77 14.47 16 38 H 0.11 4.71 7.76 -2.91 -0.02 4.68 16 39 H 0.14 3.97 8.06 -2.91 -0.02 3.94 16 40 H 0.15 3.67 8.06 -2.91 -0.02 3.64 16 41 H 0.13 4.13 8.06 -2.91 -0.02 4.11 16 42 H 0.09 4.55 7.95 -2.91 -0.02 4.53 16 Total: -1.00 -82.40 375.32 0.82 -81.58 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: 0.30 Total: 13.92 kcal Atomic # 6 Polarization: -8.65 SS G_CDS: 6.67 Total: -1.99 kcal Atomic # 7 Polarization: -111.95 SS G_CDS: -5.47 Total: -117.43 kcal Atomic # 8 Polarization: -31.89 SS G_CDS: -1.51 Total: -33.40 kcal Atomic # 14 Polarization: 47.67 SS G_CDS: 2.03 Total: 49.69 kcal Atomic # 16 Polarization: 8.81 SS G_CDS: -1.18 Total: 7.63 kcal Total: -82.40 0.82 -81.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356746245.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.089 kcal (2) G-P(sol) polarization free energy of solvation -82.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.580 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds