Wall clock time and date at job start Wed Apr 1 2020 04:16:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46499 * 120.00225 * 2 1 4 4 C 1.53006 * 109.47075 * 89.99694 * 3 2 1 5 5 H 1.09002 * 109.47089 * 304.99833 * 4 3 2 6 6 O 1.42894 * 109.47083 * 65.00240 * 4 3 2 7 7 C 1.53003 * 109.47240 * 185.00310 * 4 3 2 8 8 O 1.42891 * 109.47299 * 174.99958 * 7 4 3 9 9 C 1.35902 * 117.00193 * 179.97438 * 8 7 4 10 10 C 1.38734 * 120.05568 * 359.72807 * 9 8 7 11 11 C 1.38141 * 119.94192 * 179.70128 * 10 9 8 12 12 C 1.38261 * 120.05923 * 0.59365 * 11 10 9 13 13 C 1.50701 * 119.94543 * 179.70511 * 12 11 10 14 14 F 1.39901 * 109.46732 * 269.97576 * 13 12 11 15 15 F 1.39895 * 109.47127 * 29.97746 * 13 12 11 16 16 F 1.39901 * 109.47105 * 149.97793 * 13 12 11 17 17 C 1.38263 * 120.10940 * 359.67858 * 12 11 10 18 18 C 1.38141 * 120.05786 * 0.02562 * 17 12 11 19 19 C 1.34780 * 120.00229 * 179.97438 * 2 1 3 20 20 O 1.21684 * 119.99943 * 179.97438 * 19 2 1 21 21 C 1.46377 * 119.99627 * 0.02562 * 19 2 1 22 22 H 1.08003 * 120.00016 * 359.97438 * 21 19 2 23 23 C 1.40041 * 119.99760 * 179.97438 * 21 19 2 24 24 N 1.30670 * 120.00203 * 0.02562 * 23 21 19 25 25 Si 1.86800 * 119.99891 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.47375 * 60.00595 * 25 23 21 27 27 H 1.48509 * 109.47088 * 180.02562 * 25 23 21 28 28 H 1.48502 * 109.47196 * 300.00168 * 25 23 21 29 29 H 1.09002 * 109.47391 * 270.00005 * 1 2 3 30 30 H 1.09001 * 109.46813 * 150.00061 * 1 2 3 31 31 H 1.09004 * 109.47041 * 30.00189 * 1 2 3 32 32 H 1.08993 * 109.47560 * 209.99542 * 3 2 1 33 33 H 1.09000 * 109.47209 * 330.00227 * 3 2 1 34 34 H 0.96704 * 113.99882 * 60.00134 * 6 4 3 35 35 H 1.08997 * 109.46975 * 295.00172 * 7 4 3 36 36 H 1.09005 * 109.46905 * 54.99900 * 7 4 3 37 37 H 1.08003 * 120.02384 * 359.97438 * 10 9 8 38 38 H 1.08004 * 119.96751 * 180.27891 * 11 10 9 39 39 H 1.08000 * 119.97424 * 179.97438 * 17 12 11 40 40 H 1.08002 * 120.02938 * 180.02562 * 18 17 12 41 41 H 0.97006 * 120.00348 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 1.4426 5 1 1.5061 1.7550 1.9815 6 8 3.3209 0.7725 2.0815 7 6 3.1060 3.0938 1.4444 8 8 3.2379 3.5565 2.7899 9 6 3.8044 4.7788 2.9693 10 6 4.2299 5.5151 1.8732 11 6 4.7997 6.7598 2.0579 12 6 4.9575 7.2668 3.3345 13 6 5.5856 8.6221 3.5335 14 9 6.9703 8.4785 3.6720 15 9 5.3091 9.4313 2.4263 16 9 5.0605 9.2147 4.6869 17 6 4.5394 6.5325 4.4289 18 6 3.9633 5.2898 4.2493 19 6 2.1389 -1.1672 0.0005 20 8 3.3558 -1.1671 0.0001 21 6 1.4070 -2.4349 0.0005 22 1 0.3270 -2.4348 0.0005 23 6 2.1072 -3.6476 0.0005 24 7 3.4139 -3.6477 0.0010 25 14 1.1732 -5.2654 0.0012 26 1 0.3191 -5.3444 -1.2110 27 1 2.1383 -6.3941 0.0018 28 1 0.3199 -5.3438 1.2141 29 1 -0.3634 0.0000 1.0277 30 1 -0.3633 -0.8900 -0.5138 31 1 -0.3633 0.8900 -0.5139 32 1 3.1499 1.1384 -0.5137 33 1 1.6085 2.0284 -0.5138 34 1 4.1836 0.6811 1.6543 35 1 4.0918 3.0306 0.9837 36 1 2.4852 3.7897 0.8801 37 1 4.1116 5.1173 0.8761 38 1 5.1270 7.3353 1.2046 39 1 4.6640 6.9304 5.4252 40 1 3.6365 4.7168 5.1045 41 1 3.8990 -4.4877 0.0014 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356896722.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:16:16 Heat of formation + Delta-G solvation = -243.709861 kcal Electronic energy + Delta-G solvation = -29677.914858 eV Core-core repulsion = 24722.684345 eV Total energy + Delta-G solvation = -4955.230513 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.118 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.42296 -47.94981 -47.87892 -40.55435 -38.55307 -37.69275 -36.03338 -33.75152 -32.45347 -31.81187 -31.41037 -30.31560 -27.37410 -26.02498 -25.71965 -24.57196 -23.26384 -22.08451 -21.39977 -19.41916 -18.88820 -18.73871 -18.64431 -18.09403 -16.76957 -16.61168 -16.25571 -15.65540 -15.51731 -15.24682 -14.77046 -14.76233 -14.57776 -14.53166 -14.36032 -14.19708 -14.13300 -14.05093 -13.96865 -13.85737 -13.71000 -13.16185 -12.89221 -12.61111 -12.35026 -11.95210 -11.59897 -11.50657 -11.46322 -11.33079 -11.19905 -11.09134 -10.93312 -10.60230 -10.29341 -10.18595 -9.73865 -9.51896 -8.85719 -8.74409 -7.62628 -7.28479 -6.21333 -4.66022 0.68153 0.86234 2.39790 2.84105 3.13399 3.14200 3.19519 3.20817 3.47918 3.74618 4.05958 4.16259 4.34549 4.37408 4.48452 4.55265 4.69236 4.73970 4.88701 4.98534 5.06960 5.10834 5.27008 5.40248 5.49882 5.59220 5.64214 5.76784 5.81840 5.88705 5.91968 5.97225 6.19771 6.31396 6.42855 6.49440 7.07071 7.42579 7.51598 8.05791 8.24280 8.29552 9.00771 9.36986 10.55367 10.74128 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.031968 B = 0.001772 C = 0.001755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.661690 B =15798.261473 C =15949.069653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.642 5.642 3 C 0.101 3.899 4 C 0.096 3.904 5 H 0.099 0.901 6 O -0.534 6.534 7 C 0.024 3.976 8 O -0.293 6.293 9 C 0.170 3.830 10 C -0.215 4.215 11 C -0.028 4.028 12 C -0.234 4.234 13 C 0.513 3.487 14 F -0.179 7.179 15 F -0.180 7.180 16 F -0.179 7.179 17 C -0.031 4.031 18 C -0.156 4.156 19 C 0.564 3.436 20 O -0.573 6.573 21 C -0.543 4.543 22 H 0.070 0.930 23 C 0.088 3.912 24 N -0.766 5.766 25 Si 0.906 3.094 26 H -0.268 1.268 27 H -0.281 1.281 28 H -0.268 1.268 29 H 0.031 0.969 30 H 0.074 0.926 31 H 0.040 0.960 32 H 0.079 0.921 33 H 0.062 0.938 34 H 0.377 0.623 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.141 0.859 38 H 0.137 0.863 39 H 0.141 0.859 40 H 0.144 0.856 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.474 22.055 4.675 22.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.380 5.380 3 C -0.024 4.024 4 C 0.034 3.966 5 H 0.117 0.883 6 O -0.339 6.339 7 C -0.052 4.052 8 O -0.205 6.205 9 C 0.123 3.877 10 C -0.233 4.233 11 C -0.046 4.046 12 C -0.235 4.235 13 C 0.459 3.541 14 F -0.160 7.160 15 F -0.161 7.161 16 F -0.161 7.161 17 C -0.049 4.049 18 C -0.174 4.174 19 C 0.370 3.630 20 O -0.455 6.455 21 C -0.580 4.580 22 H 0.088 0.912 23 C -0.132 4.132 24 N -0.395 5.395 25 Si 0.731 3.269 26 H -0.193 1.193 27 H -0.206 1.206 28 H -0.193 1.193 29 H 0.050 0.950 30 H 0.092 0.908 31 H 0.059 0.941 32 H 0.097 0.903 33 H 0.080 0.920 34 H 0.225 0.775 35 H 0.088 0.912 36 H 0.090 0.910 37 H 0.158 0.842 38 H 0.155 0.845 39 H 0.158 0.842 40 H 0.162 0.838 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.751 21.733 5.198 22.359 hybrid contribution -0.001 -0.254 -0.563 0.617 sum 0.750 21.479 4.635 21.986 Atomic orbital electron populations 1.21436 0.82057 1.01146 0.99745 1.47913 1.05075 1.04786 1.80196 1.21548 0.99005 0.88061 0.93827 1.22472 0.94128 0.83779 0.96198 0.88270 1.86634 1.29506 1.62203 1.55576 1.23919 1.01812 0.98289 0.81182 1.86250 1.74311 1.29656 1.30286 1.19368 0.89609 0.84694 0.94042 1.21303 1.06414 0.96464 0.99169 1.20697 0.93769 0.94486 0.95622 1.19787 1.11841 0.95493 0.96394 1.18233 0.76362 0.85816 0.73665 1.93227 1.31324 1.95930 1.95525 1.93179 1.93513 1.75733 1.53682 1.93180 1.86430 1.85797 1.50670 1.20713 0.93254 0.92707 0.98209 1.20459 1.04867 0.96465 0.95654 1.18144 0.86945 0.81974 0.75911 1.90540 1.13956 1.86024 1.54969 1.20947 0.93608 0.89285 1.54138 0.91160 1.25710 0.94627 1.00250 0.92601 1.69995 1.07007 1.27348 1.35099 0.86465 0.79880 0.81170 0.79428 1.19324 1.20569 1.19260 0.95009 0.90779 0.94132 0.90296 0.91954 0.77472 0.91191 0.91037 0.84158 0.84538 0.84157 0.83833 0.92094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.76 10.19 59.85 0.61 2.37 16 2 N -0.64 -13.68 2.86 -183.24 -0.52 -14.21 16 3 C 0.10 1.71 5.16 -4.04 -0.02 1.69 16 4 C 0.10 1.52 3.49 -26.73 -0.09 1.43 16 5 H 0.10 1.61 8.14 -51.93 -0.42 1.19 16 6 O -0.53 -10.69 12.17 -51.83 -0.63 -11.33 16 7 C 0.02 0.28 4.37 37.16 0.16 0.45 16 8 O -0.29 -3.87 10.10 -24.29 -0.25 -4.11 16 9 C 0.17 1.92 6.69 -39.21 -0.26 1.65 16 10 C -0.21 -2.06 9.04 -39.43 -0.36 -2.42 16 11 C -0.03 -0.25 9.39 -39.61 -0.37 -0.62 16 12 C -0.23 -2.19 5.45 -104.60 -0.57 -2.76 16 13 C 0.51 4.77 3.36 36.01 0.12 4.89 16 14 F -0.18 -1.79 17.30 2.25 0.04 -1.75 16 15 F -0.18 -1.70 16.46 2.25 0.04 -1.66 16 16 F -0.18 -1.68 16.46 2.25 0.04 -1.64 16 17 C -0.03 -0.27 9.39 -39.61 -0.37 -0.65 16 18 C -0.16 -1.56 9.99 -39.43 -0.39 -1.95 16 19 C 0.56 15.32 7.24 -12.98 -0.09 15.22 16 20 O -0.57 -17.19 13.57 -2.54 -0.03 -17.23 16 21 C -0.54 -14.93 8.74 -35.63 -0.31 -15.24 16 22 H 0.07 1.77 6.00 -52.48 -0.31 1.45 16 23 C 0.09 2.41 5.50 -17.37 -0.10 2.31 16 24 N -0.77 -22.42 11.83 55.55 0.66 -21.77 16 25 Si 0.91 19.85 29.56 -169.99 -5.02 14.82 16 26 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 27 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 28 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 29 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 1.35 6.09 -51.93 -0.32 1.04 16 31 H 0.04 0.56 7.89 -51.93 -0.41 0.15 16 32 H 0.08 1.44 7.42 -51.93 -0.39 1.06 16 33 H 0.06 0.82 7.89 -51.93 -0.41 0.41 16 34 H 0.38 7.14 8.74 45.56 0.40 7.54 16 35 H 0.07 0.76 7.65 -51.93 -0.40 0.36 16 36 H 0.07 0.67 7.68 -51.93 -0.40 0.27 16 37 H 0.14 1.12 6.30 -52.48 -0.33 0.79 16 38 H 0.14 0.97 7.60 -52.48 -0.40 0.57 16 39 H 0.14 0.96 7.60 -52.49 -0.40 0.56 16 40 H 0.14 1.28 8.06 -52.49 -0.42 0.86 16 41 H 0.27 7.18 8.29 -40.82 -0.34 6.85 16 LS Contribution 363.12 15.07 5.47 5.47 Total: -1.00 -34.04 363.12 -6.03 -40.07 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: -3.76 Total: 6.94 kcal Atomic # 6 Polarization: 8.42 SS G_CDS: -2.05 Total: 6.38 kcal Atomic # 7 Polarization: -36.11 SS G_CDS: 0.13 Total: -35.97 kcal Atomic # 8 Polarization: -31.75 SS G_CDS: -0.91 Total: -32.67 kcal Atomic # 9 Polarization: -5.16 SS G_CDS: 0.11 Total: -5.05 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.02 Total: 14.82 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -34.04 -6.03 -40.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356896722.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -203.637 kcal (2) G-P(sol) polarization free energy of solvation -34.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -237.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -243.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds