Wall clock time and date at job start Wed Apr 1 2020 04:16:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46499 * 120.00225 * 2 1 4 4 C 1.53006 * 109.47075 * 89.99694 * 3 2 1 5 5 H 1.09002 * 109.47089 * 304.99833 * 4 3 2 6 6 O 1.42894 * 109.47083 * 65.00240 * 4 3 2 7 7 C 1.53003 * 109.47240 * 185.00310 * 4 3 2 8 8 O 1.42891 * 109.47299 * 174.99958 * 7 4 3 9 9 C 1.35902 * 117.00193 * 179.97438 * 8 7 4 10 10 C 1.38734 * 120.05568 * 359.72807 * 9 8 7 11 11 C 1.38141 * 119.94192 * 179.70128 * 10 9 8 12 12 C 1.38261 * 120.05923 * 0.59365 * 11 10 9 13 13 C 1.50701 * 119.94543 * 179.70511 * 12 11 10 14 14 F 1.39901 * 109.46732 * 269.97576 * 13 12 11 15 15 F 1.39895 * 109.47127 * 29.97746 * 13 12 11 16 16 F 1.39901 * 109.47105 * 149.97793 * 13 12 11 17 17 C 1.38263 * 120.10940 * 359.67858 * 12 11 10 18 18 C 1.38141 * 120.05786 * 0.02562 * 17 12 11 19 19 C 1.34780 * 120.00229 * 179.97438 * 2 1 3 20 20 O 1.21684 * 119.99943 * 179.97438 * 19 2 1 21 21 C 1.46377 * 119.99627 * 0.02562 * 19 2 1 22 22 H 1.08003 * 120.00016 * 359.97438 * 21 19 2 23 23 C 1.40041 * 119.99760 * 179.97438 * 21 19 2 24 24 N 1.30670 * 120.00203 * 0.02562 * 23 21 19 25 25 Si 1.86800 * 119.99891 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.47375 * 60.00595 * 25 23 21 27 27 H 1.48509 * 109.47088 * 180.02562 * 25 23 21 28 28 H 1.48502 * 109.47196 * 300.00168 * 25 23 21 29 29 H 1.09002 * 109.47391 * 270.00005 * 1 2 3 30 30 H 1.09001 * 109.46813 * 150.00061 * 1 2 3 31 31 H 1.09004 * 109.47041 * 30.00189 * 1 2 3 32 32 H 1.08993 * 109.47560 * 209.99542 * 3 2 1 33 33 H 1.09000 * 109.47209 * 330.00227 * 3 2 1 34 34 H 0.96704 * 113.99882 * 60.00134 * 6 4 3 35 35 H 1.08997 * 109.46975 * 295.00172 * 7 4 3 36 36 H 1.09005 * 109.46905 * 54.99900 * 7 4 3 37 37 H 1.08003 * 120.02384 * 359.97438 * 10 9 8 38 38 H 1.08004 * 119.96751 * 180.27891 * 11 10 9 39 39 H 1.08000 * 119.97424 * 179.97438 * 17 12 11 40 40 H 1.08002 * 120.02938 * 180.02562 * 18 17 12 41 41 H 0.97006 * 120.00348 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 1.4426 5 1 1.5061 1.7550 1.9815 6 8 3.3209 0.7725 2.0815 7 6 3.1060 3.0938 1.4444 8 8 3.2379 3.5565 2.7899 9 6 3.8044 4.7788 2.9693 10 6 4.2299 5.5151 1.8732 11 6 4.7997 6.7598 2.0579 12 6 4.9575 7.2668 3.3345 13 6 5.5856 8.6221 3.5335 14 9 6.9703 8.4785 3.6720 15 9 5.3091 9.4313 2.4263 16 9 5.0605 9.2147 4.6869 17 6 4.5394 6.5325 4.4289 18 6 3.9633 5.2898 4.2493 19 6 2.1389 -1.1672 0.0005 20 8 3.3558 -1.1671 0.0001 21 6 1.4070 -2.4349 0.0005 22 1 0.3270 -2.4348 0.0005 23 6 2.1072 -3.6476 0.0005 24 7 3.4139 -3.6477 0.0010 25 14 1.1732 -5.2654 0.0012 26 1 0.3191 -5.3444 -1.2110 27 1 2.1383 -6.3941 0.0018 28 1 0.3199 -5.3438 1.2141 29 1 -0.3634 0.0000 1.0277 30 1 -0.3633 -0.8900 -0.5138 31 1 -0.3633 0.8900 -0.5139 32 1 3.1499 1.1384 -0.5137 33 1 1.6085 2.0284 -0.5138 34 1 4.1836 0.6811 1.6543 35 1 4.0918 3.0306 0.9837 36 1 2.4852 3.7897 0.8801 37 1 4.1116 5.1173 0.8761 38 1 5.1270 7.3353 1.2046 39 1 4.6640 6.9304 5.4252 40 1 3.6365 4.7168 5.1045 41 1 3.8990 -4.4877 0.0014 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356896722.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:16:15 Heat of formation + Delta-G solvation = -266.723916 kcal Electronic energy + Delta-G solvation = -29678.912823 eV Core-core repulsion = 24722.684345 eV Total energy + Delta-G solvation = -4956.228477 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.118 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -51.16460 -48.68393 -48.63310 -41.38846 -39.97389 -38.87642 -37.52592 -35.51927 -34.52027 -32.67479 -32.15548 -31.53074 -28.87079 -27.65808 -26.67067 -25.90891 -24.19688 -23.00921 -22.49575 -21.14108 -19.65574 -19.48197 -19.39572 -19.01164 -18.41827 -17.81842 -17.71665 -17.25371 -16.64056 -16.21020 -16.06781 -15.91613 -15.53008 -15.50399 -15.42854 -15.33736 -15.09507 -14.89047 -14.85198 -14.79482 -14.46923 -14.33073 -14.12583 -13.87459 -13.65556 -13.37411 -13.08789 -13.03341 -12.71894 -12.68220 -12.57577 -12.28977 -12.14980 -12.07908 -12.03638 -11.82259 -11.12115 -10.86923 -10.21992 -9.69356 -9.54349 -8.99511 -8.23699 -6.77480 -0.07250 0.15765 1.40397 1.43357 1.53962 1.65840 1.93019 2.26574 2.39527 2.54143 2.74607 2.93484 3.02326 3.42848 3.51080 3.60926 3.67385 3.75693 3.87587 3.96918 4.03368 4.17242 4.24371 4.33162 4.37751 4.46786 4.59429 4.68665 4.82757 4.89454 4.93748 5.02238 5.09035 5.09744 5.16079 5.40880 5.47838 5.80725 6.16604 6.24417 6.45378 6.80643 6.93909 7.46882 8.54896 8.74165 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.031968 B = 0.001772 C = 0.001755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.661690 B =15798.261473 C =15949.069653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.648 5.648 3 C 0.100 3.900 4 C 0.097 3.903 5 H 0.095 0.905 6 O -0.567 6.567 7 C 0.034 3.966 8 O -0.317 6.317 9 C 0.150 3.850 10 C -0.214 4.214 11 C -0.029 4.029 12 C -0.239 4.239 13 C 0.517 3.483 14 F -0.183 7.183 15 F -0.180 7.180 16 F -0.180 7.180 17 C -0.029 4.029 18 C -0.165 4.165 19 C 0.548 3.452 20 O -0.615 6.615 21 C -0.574 4.574 22 H 0.087 0.913 23 C 0.030 3.970 24 N -0.819 5.819 25 Si 0.988 3.012 26 H -0.253 1.253 27 H -0.276 1.276 28 H -0.259 1.259 29 H 0.036 0.964 30 H 0.062 0.938 31 H 0.085 0.915 32 H 0.059 0.941 33 H 0.111 0.889 34 H 0.376 0.624 35 H 0.078 0.922 36 H 0.106 0.894 37 H 0.157 0.843 38 H 0.156 0.844 39 H 0.159 0.841 40 H 0.148 0.852 41 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.106 23.403 4.249 23.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.384 5.384 3 C -0.024 4.024 4 C 0.036 3.964 5 H 0.113 0.887 6 O -0.373 6.373 7 C -0.041 4.041 8 O -0.230 6.230 9 C 0.103 3.897 10 C -0.233 4.233 11 C -0.047 4.047 12 C -0.240 4.240 13 C 0.463 3.537 14 F -0.165 7.165 15 F -0.161 7.161 16 F -0.161 7.161 17 C -0.047 4.047 18 C -0.184 4.184 19 C 0.354 3.646 20 O -0.501 6.501 21 C -0.611 4.611 22 H 0.105 0.895 23 C -0.185 4.185 24 N -0.448 5.448 25 Si 0.808 3.192 26 H -0.177 1.177 27 H -0.201 1.201 28 H -0.183 1.183 29 H 0.054 0.946 30 H 0.080 0.920 31 H 0.104 0.896 32 H 0.078 0.922 33 H 0.129 0.871 34 H 0.224 0.776 35 H 0.096 0.904 36 H 0.124 0.876 37 H 0.175 0.825 38 H 0.174 0.826 39 H 0.176 0.824 40 H 0.166 0.834 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.876 23.145 4.771 23.647 hybrid contribution 0.474 -0.501 -0.401 0.798 sum -0.402 22.644 4.370 23.065 Atomic orbital electron populations 1.21603 0.79661 1.02811 1.00539 1.47742 1.06794 1.04917 1.78932 1.21762 0.98562 0.87216 0.94907 1.22471 0.93703 0.85324 0.94930 0.88719 1.86582 1.29971 1.64084 1.56685 1.23704 1.02570 0.96427 0.81409 1.86182 1.75169 1.30903 1.30754 1.19578 0.90698 0.84356 0.95048 1.21483 1.05877 0.96424 0.99466 1.20948 0.93217 0.94398 0.96147 1.19932 1.11726 0.95505 0.96848 1.18188 0.76091 0.85784 0.73619 1.93220 1.31744 1.95953 1.95552 1.93179 1.93487 1.75753 1.53684 1.93181 1.86399 1.85816 1.50704 1.20914 0.92514 0.92184 0.99121 1.20625 1.05122 0.96967 0.95654 1.18403 0.86706 0.83874 0.75636 1.90495 1.15690 1.87301 1.56596 1.21515 0.94726 0.90351 1.54501 0.89515 1.26880 0.95498 1.04648 0.91450 1.70165 1.09238 1.28626 1.36821 0.85208 0.78355 0.75458 0.80135 1.17710 1.20133 1.18303 0.94564 0.91969 0.89618 0.92207 0.87137 0.77628 0.90361 0.87615 0.82508 0.82644 0.82352 0.83449 0.91874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.20 10.19 127.77 1.30 4.50 16 2 N -0.65 -27.29 2.86 -851.88 -2.43 -29.73 16 3 C 0.10 3.25 5.16 86.38 0.45 3.69 16 4 C 0.10 2.99 3.49 30.60 0.11 3.10 16 5 H 0.09 2.99 8.14 -2.39 -0.02 2.97 16 6 O -0.57 -23.52 12.17 -133.11 -1.62 -25.14 16 7 C 0.03 0.76 4.37 71.98 0.31 1.07 16 8 O -0.32 -8.08 10.10 -87.80 -0.89 -8.97 16 9 C 0.15 3.18 6.69 22.51 0.15 3.33 16 10 C -0.21 -3.66 9.04 22.37 0.20 -3.46 16 11 C -0.03 -0.46 9.39 22.25 0.21 -0.25 16 12 C -0.24 -4.04 5.45 -19.85 -0.11 -4.15 16 13 C 0.52 8.74 3.36 71.24 0.24 8.98 16 14 F -0.18 -3.41 17.30 44.97 0.78 -2.63 16 15 F -0.18 -3.06 16.46 44.97 0.74 -2.32 16 16 F -0.18 -3.07 16.46 44.97 0.74 -2.33 16 17 C -0.03 -0.48 9.39 22.25 0.21 -0.27 16 18 C -0.17 -3.15 9.99 22.37 0.22 -2.93 16 19 C 0.55 30.48 7.24 86.36 0.62 31.11 16 20 O -0.61 -38.48 13.57 3.10 0.04 -38.43 16 21 C -0.57 -32.02 8.74 24.83 0.22 -31.81 16 22 H 0.09 4.35 6.00 -2.91 -0.02 4.34 16 23 C 0.03 1.68 5.50 85.30 0.47 2.15 16 24 N -0.82 -49.56 11.83 21.83 0.26 -49.30 16 25 Si 0.99 40.93 29.56 68.60 2.03 42.96 16 26 H -0.25 -9.77 7.11 99.48 0.71 -9.06 16 27 H -0.28 -11.12 7.11 99.48 0.71 -10.42 16 28 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 29 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.06 2.19 6.09 -2.39 -0.01 2.17 16 31 H 0.09 2.04 7.89 -2.38 -0.02 2.03 16 32 H 0.06 2.19 7.42 -2.39 -0.02 2.17 16 33 H 0.11 2.50 7.89 -2.39 -0.02 2.48 16 34 H 0.38 15.14 8.74 -74.05 -0.65 14.49 16 35 H 0.08 1.59 7.65 -2.39 -0.02 1.57 16 36 H 0.11 1.59 7.68 -2.38 -0.02 1.58 16 37 H 0.16 2.06 6.30 -2.91 -0.02 2.04 16 38 H 0.16 1.79 7.60 -2.91 -0.02 1.77 16 39 H 0.16 1.91 7.60 -2.91 -0.02 1.88 16 40 H 0.15 2.58 8.06 -2.91 -0.02 2.56 16 41 H 0.27 15.04 8.29 -92.70 -0.77 14.27 16 Total: -1.00 -77.08 363.12 4.71 -72.37 By element: Atomic # 1 Polarization: 27.99 SS G_CDS: 0.46 Total: 28.45 kcal Atomic # 6 Polarization: 10.47 SS G_CDS: 4.61 Total: 15.08 kcal Atomic # 7 Polarization: -76.85 SS G_CDS: -2.18 Total: -79.03 kcal Atomic # 8 Polarization: -70.08 SS G_CDS: -2.46 Total: -72.55 kcal Atomic # 9 Polarization: -9.54 SS G_CDS: 2.26 Total: -7.28 kcal Atomic # 14 Polarization: 40.93 SS G_CDS: 2.03 Total: 42.96 kcal Total: -77.08 4.71 -72.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356896722.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -194.355 kcal (2) G-P(sol) polarization free energy of solvation -77.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -271.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -266.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds