Wall clock time and date at job start Wed Apr 1 2020 04:16:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46497 * 120.00585 * 2 1 4 4 C 1.52992 * 109.47136 * 89.99633 * 3 2 1 5 5 H 1.09004 * 109.47117 * 60.01145 * 4 3 2 6 6 O 1.42893 * 109.47652 * 300.00362 * 4 3 2 7 7 C 1.53010 * 109.47145 * 180.02562 * 4 3 2 8 8 O 1.42897 * 109.47296 * 185.00124 * 7 4 3 9 9 C 1.35899 * 117.00302 * 180.02562 * 8 7 4 10 10 C 1.38726 * 120.05788 * 179.97438 * 9 8 7 11 11 C 1.38149 * 119.94477 * 179.97438 * 10 9 8 12 12 C 1.38266 * 120.05411 * 0.28574 * 11 10 9 13 13 C 1.50696 * 119.94521 * 179.72456 * 12 11 10 14 14 F 1.39894 * 109.47321 * 89.99215 * 13 12 11 15 15 F 1.39892 * 109.47177 * 209.99864 * 13 12 11 16 16 F 1.39905 * 109.46936 * 329.99415 * 13 12 11 17 17 C 1.38264 * 120.10762 * 359.44038 * 12 11 10 18 18 C 1.38144 * 120.05928 * 0.55731 * 17 12 11 19 19 C 1.34779 * 119.99745 * 180.02562 * 2 1 3 20 20 O 1.21688 * 119.99757 * 179.97438 * 19 2 1 21 21 C 1.46376 * 120.00038 * 359.97438 * 19 2 1 22 22 H 1.07999 * 119.99909 * 359.97438 * 21 19 2 23 23 C 1.40052 * 119.99942 * 180.02562 * 21 19 2 24 24 N 1.30667 * 120.00031 * 359.97438 * 23 21 19 25 25 Si 1.86802 * 119.99770 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.46957 * 60.00053 * 25 23 21 27 27 H 1.48499 * 109.46880 * 180.02562 * 25 23 21 28 28 H 1.48497 * 109.47065 * 299.99808 * 25 23 21 29 29 H 1.08996 * 109.47806 * 89.99908 * 1 2 3 30 30 H 1.09000 * 109.47712 * 210.00050 * 1 2 3 31 31 H 1.08997 * 109.47003 * 330.00014 * 1 2 3 32 32 H 1.09010 * 109.46596 * 330.00028 * 3 2 1 33 33 H 1.09000 * 109.47427 * 210.00523 * 3 2 1 34 34 H 0.96693 * 114.00263 * 299.99928 * 6 4 3 35 35 H 1.09002 * 109.46346 * 65.00591 * 7 4 3 36 36 H 1.08996 * 109.47127 * 305.00522 * 7 4 3 37 37 H 1.08000 * 120.02799 * 359.96126 * 10 9 8 38 38 H 1.08002 * 119.97030 * 179.97438 * 11 10 9 39 39 H 1.08007 * 119.96975 * 180.26053 * 17 12 11 40 40 H 1.08007 * 120.02904 * 179.75033 * 18 17 12 41 41 H 0.97007 * 120.00094 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.4525 1.7103 1.4424 5 1 3.0417 0.9507 1.9563 6 8 1.2040 1.8813 2.1161 7 6 3.2171 3.0356 1.4424 8 8 3.5570 3.3895 2.7845 9 6 4.2433 4.5490 2.9620 10 6 4.6052 4.9538 4.2385 11 6 5.3033 6.1326 4.4162 12 6 5.6360 6.9118 3.3235 13 6 6.3921 8.2003 3.5207 14 9 7.7669 7.9476 3.4648 15 9 6.0427 9.1050 2.5124 16 9 6.0684 8.7447 4.7682 17 6 5.2813 6.5076 2.0497 18 6 4.5833 5.3297 1.8667 19 6 2.1388 -1.1672 -0.0005 20 8 3.3557 -1.1672 -0.0010 21 6 1.4069 -2.4349 -0.0005 22 1 0.3269 -2.4348 0.0003 23 6 2.1071 -3.6478 -0.0005 24 7 3.4137 -3.6478 -0.0010 25 14 1.1730 -5.2655 0.0002 26 1 0.3188 -5.3443 -1.2119 27 1 2.1379 -6.3942 0.0007 28 1 0.3197 -5.3438 1.2130 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.6084 2.0283 -0.5139 33 1 3.1499 1.1383 -0.5139 34 1 0.6269 2.5439 1.7127 35 1 2.5918 3.8158 1.0083 36 1 4.1277 2.9297 0.8529 37 1 4.3414 4.3480 5.0928 38 1 5.5849 6.4484 5.4099 39 1 5.5460 7.1159 1.1974 40 1 4.3029 5.0165 0.8718 41 1 3.8988 -4.4879 -0.0014 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356896724.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:16:19 Heat of formation + Delta-G solvation = -244.768994 kcal Electronic energy + Delta-G solvation = -29617.433341 eV Core-core repulsion = 24662.156901 eV Total energy + Delta-G solvation = -4955.276441 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.118 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.41694 -47.94330 -47.87243 -40.55942 -38.64061 -37.71319 -36.34649 -33.67524 -32.49472 -31.86219 -31.41727 -30.49253 -27.37610 -26.05791 -25.68976 -24.52225 -23.30140 -22.10780 -21.52451 -19.45499 -18.88990 -18.73262 -18.64048 -18.09692 -16.91571 -16.61782 -16.24690 -15.66747 -15.60454 -15.25321 -14.88467 -14.75278 -14.65285 -14.54990 -14.35546 -14.24976 -14.13339 -14.04543 -13.96921 -13.90680 -13.71884 -13.19194 -12.90498 -12.65169 -12.37791 -11.94982 -11.62795 -11.49246 -11.45054 -11.33827 -11.27564 -11.14011 -10.98932 -10.70850 -10.31499 -10.22144 -9.99577 -9.51144 -8.88942 -8.74012 -7.69198 -7.30345 -6.24975 -4.70016 0.68818 0.86952 2.40451 2.83460 3.12831 3.14073 3.18048 3.19599 3.48556 3.75248 4.03772 4.16983 4.34052 4.36371 4.46501 4.49394 4.55384 4.73833 4.84798 4.96279 5.02434 5.10587 5.26443 5.40800 5.42179 5.50655 5.64121 5.74952 5.82385 5.89109 6.00245 6.11037 6.19852 6.30943 6.44162 6.55157 7.07241 7.40088 7.51195 7.80503 8.06082 8.26950 8.97035 9.32104 10.50123 10.68994 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.026732 B = 0.001805 C = 0.001773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.187886 B =15512.351528 C =15787.381682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.639 5.639 3 C 0.104 3.896 4 C 0.094 3.906 5 H 0.115 0.885 6 O -0.543 6.543 7 C 0.027 3.973 8 O -0.293 6.293 9 C 0.171 3.829 10 C -0.156 4.156 11 C -0.031 4.031 12 C -0.233 4.233 13 C 0.513 3.487 14 F -0.179 7.179 15 F -0.180 7.180 16 F -0.179 7.179 17 C -0.027 4.027 18 C -0.215 4.215 19 C 0.555 3.445 20 O -0.579 6.579 21 C -0.541 4.541 22 H 0.073 0.927 23 C 0.087 3.913 24 N -0.767 5.767 25 Si 0.908 3.092 26 H -0.268 1.268 27 H -0.280 1.280 28 H -0.267 1.267 29 H 0.028 0.972 30 H 0.072 0.928 31 H 0.044 0.956 32 H 0.058 0.942 33 H 0.085 0.915 34 H 0.362 0.638 35 H 0.067 0.933 36 H 0.077 0.923 37 H 0.144 0.856 38 H 0.141 0.859 39 H 0.137 0.863 40 H 0.141 0.859 41 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.894 21.809 4.908 22.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.376 5.376 3 C -0.022 4.022 4 C 0.033 3.967 5 H 0.133 0.867 6 O -0.347 6.347 7 C -0.049 4.049 8 O -0.205 6.205 9 C 0.123 3.877 10 C -0.174 4.174 11 C -0.049 4.049 12 C -0.235 4.235 13 C 0.459 3.541 14 F -0.160 7.160 15 F -0.161 7.161 16 F -0.161 7.161 17 C -0.046 4.046 18 C -0.233 4.233 19 C 0.362 3.638 20 O -0.462 6.462 21 C -0.577 4.577 22 H 0.091 0.909 23 C -0.133 4.133 24 N -0.395 5.395 25 Si 0.732 3.268 26 H -0.192 1.192 27 H -0.205 1.205 28 H -0.192 1.192 29 H 0.047 0.953 30 H 0.090 0.910 31 H 0.063 0.937 32 H 0.077 0.923 33 H 0.103 0.897 34 H 0.208 0.792 35 H 0.085 0.915 36 H 0.095 0.905 37 H 0.162 0.838 38 H 0.159 0.841 39 H 0.155 0.845 40 H 0.158 0.842 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.933 21.087 5.422 21.858 hybrid contribution -0.527 0.037 -0.605 0.803 sum 1.407 21.124 4.817 21.711 Atomic orbital electron populations 1.21395 0.81733 1.01590 0.99124 1.47835 1.05347 1.04500 1.79953 1.21455 0.99126 0.88168 0.93444 1.22656 0.84460 0.93450 0.96130 0.86688 1.86724 1.28644 1.62990 1.56342 1.23843 1.00690 0.98904 0.81495 1.86253 1.68240 1.35565 1.30442 1.19356 0.89001 0.85285 0.94048 1.20460 1.03190 0.98027 0.95738 1.20717 0.93695 0.92269 0.98189 1.19789 1.10052 0.97183 0.96487 1.18230 0.77551 0.84631 0.73659 1.93226 1.32549 1.94201 1.96028 1.93177 1.91892 1.70116 1.60924 1.93181 1.92513 1.87479 1.42900 1.20696 0.93288 0.94969 0.95615 1.21299 1.05770 0.97131 0.99147 1.18287 0.86974 0.82268 0.76286 1.90593 1.13998 1.86226 1.55382 1.20961 0.93731 0.89145 1.53903 0.90938 1.25747 0.94642 1.00382 0.92563 1.70002 1.07087 1.27494 1.34934 0.86430 0.79860 0.80978 0.79510 1.19237 1.20537 1.19191 0.95336 0.90965 0.93698 0.92324 0.89716 0.79207 0.91527 0.90452 0.83816 0.84142 0.84534 0.84163 0.91990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.86 9.89 59.84 0.59 2.45 16 2 N -0.64 -13.67 2.80 -183.26 -0.51 -14.19 16 3 C 0.10 1.76 5.10 -4.05 -0.02 1.74 16 4 C 0.09 1.48 3.52 -26.73 -0.09 1.39 16 5 H 0.12 2.32 8.14 -51.93 -0.42 1.90 16 6 O -0.54 -8.29 12.02 -40.11 -0.48 -8.78 16 7 C 0.03 0.32 4.37 37.16 0.16 0.48 16 8 O -0.29 -3.93 10.10 -24.30 -0.25 -4.18 16 9 C 0.17 1.95 6.69 -39.22 -0.26 1.69 16 10 C -0.16 -1.59 9.99 -39.43 -0.39 -1.98 16 11 C -0.03 -0.28 9.39 -39.60 -0.37 -0.65 16 12 C -0.23 -2.21 5.45 -104.60 -0.57 -2.78 16 13 C 0.51 4.82 3.36 36.00 0.12 4.94 16 14 F -0.18 -1.81 17.30 2.25 0.04 -1.77 16 15 F -0.18 -1.71 16.47 2.25 0.04 -1.67 16 16 F -0.18 -1.69 16.46 2.25 0.04 -1.66 16 17 C -0.03 -0.25 9.39 -39.61 -0.37 -0.62 16 18 C -0.21 -2.09 9.04 -39.43 -0.36 -2.44 16 19 C 0.56 15.28 7.61 -12.99 -0.10 15.18 16 20 O -0.58 -17.97 14.60 5.20 0.08 -17.89 16 21 C -0.54 -14.89 8.74 -35.63 -0.31 -15.20 16 22 H 0.07 1.82 6.00 -52.49 -0.31 1.51 16 23 C 0.09 2.38 5.50 -17.37 -0.10 2.28 16 24 N -0.77 -22.56 11.83 55.55 0.66 -21.90 16 25 Si 0.91 19.80 29.56 -169.99 -5.02 14.78 16 26 H -0.27 -5.66 7.11 56.52 0.40 -5.25 16 27 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 28 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 29 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 1.36 6.09 -51.93 -0.32 1.05 16 31 H 0.04 0.64 6.88 -51.93 -0.36 0.28 16 32 H 0.06 0.76 8.07 -51.92 -0.42 0.34 16 33 H 0.08 1.58 7.42 -51.93 -0.39 1.19 16 34 H 0.36 3.85 8.79 45.56 0.40 4.25 16 35 H 0.07 0.60 7.66 -51.93 -0.40 0.21 16 36 H 0.08 0.87 7.66 -51.93 -0.40 0.47 16 37 H 0.14 1.32 8.06 -52.49 -0.42 0.89 16 38 H 0.14 0.98 7.60 -52.49 -0.40 0.58 16 39 H 0.14 0.98 7.61 -52.48 -0.40 0.58 16 40 H 0.14 1.13 6.30 -52.48 -0.33 0.80 16 41 H 0.27 7.22 8.29 -40.82 -0.34 6.88 16 LS Contribution 363.21 15.07 5.47 5.47 Total: -1.00 -34.73 363.21 -5.74 -40.47 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -3.72 Total: 4.84 kcal Atomic # 6 Polarization: 8.54 SS G_CDS: -2.07 Total: 6.47 kcal Atomic # 7 Polarization: -36.24 SS G_CDS: 0.14 Total: -36.09 kcal Atomic # 8 Polarization: -30.19 SS G_CDS: -0.65 Total: -30.84 kcal Atomic # 9 Polarization: -5.21 SS G_CDS: 0.11 Total: -5.10 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.02 Total: 14.78 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -34.73 -5.74 -40.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356896724.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -204.300 kcal (2) G-P(sol) polarization free energy of solvation -34.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -239.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -244.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds