Wall clock time and date at job start Wed Apr 1 2020 04:16:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46497 * 120.00585 * 2 1 4 4 C 1.52992 * 109.47136 * 89.99633 * 3 2 1 5 5 H 1.09004 * 109.47117 * 60.01145 * 4 3 2 6 6 O 1.42893 * 109.47652 * 300.00362 * 4 3 2 7 7 C 1.53010 * 109.47145 * 180.02562 * 4 3 2 8 8 O 1.42897 * 109.47296 * 185.00124 * 7 4 3 9 9 C 1.35899 * 117.00302 * 180.02562 * 8 7 4 10 10 C 1.38726 * 120.05788 * 179.97438 * 9 8 7 11 11 C 1.38149 * 119.94477 * 179.97438 * 10 9 8 12 12 C 1.38266 * 120.05411 * 0.28574 * 11 10 9 13 13 C 1.50696 * 119.94521 * 179.72456 * 12 11 10 14 14 F 1.39894 * 109.47321 * 89.99215 * 13 12 11 15 15 F 1.39892 * 109.47177 * 209.99864 * 13 12 11 16 16 F 1.39905 * 109.46936 * 329.99415 * 13 12 11 17 17 C 1.38264 * 120.10762 * 359.44038 * 12 11 10 18 18 C 1.38144 * 120.05928 * 0.55731 * 17 12 11 19 19 C 1.34779 * 119.99745 * 180.02562 * 2 1 3 20 20 O 1.21688 * 119.99757 * 179.97438 * 19 2 1 21 21 C 1.46376 * 120.00038 * 359.97438 * 19 2 1 22 22 H 1.07999 * 119.99909 * 359.97438 * 21 19 2 23 23 C 1.40052 * 119.99942 * 180.02562 * 21 19 2 24 24 N 1.30667 * 120.00031 * 359.97438 * 23 21 19 25 25 Si 1.86802 * 119.99770 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.46957 * 60.00053 * 25 23 21 27 27 H 1.48499 * 109.46880 * 180.02562 * 25 23 21 28 28 H 1.48497 * 109.47065 * 299.99808 * 25 23 21 29 29 H 1.08996 * 109.47806 * 89.99908 * 1 2 3 30 30 H 1.09000 * 109.47712 * 210.00050 * 1 2 3 31 31 H 1.08997 * 109.47003 * 330.00014 * 1 2 3 32 32 H 1.09010 * 109.46596 * 330.00028 * 3 2 1 33 33 H 1.09000 * 109.47427 * 210.00523 * 3 2 1 34 34 H 0.96693 * 114.00263 * 299.99928 * 6 4 3 35 35 H 1.09002 * 109.46346 * 65.00591 * 7 4 3 36 36 H 1.08996 * 109.47127 * 305.00522 * 7 4 3 37 37 H 1.08000 * 120.02799 * 359.96126 * 10 9 8 38 38 H 1.08002 * 119.97030 * 179.97438 * 11 10 9 39 39 H 1.08007 * 119.96975 * 180.26053 * 17 12 11 40 40 H 1.08007 * 120.02904 * 179.75033 * 18 17 12 41 41 H 0.97007 * 120.00094 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.4525 1.7103 1.4424 5 1 3.0417 0.9507 1.9563 6 8 1.2040 1.8813 2.1161 7 6 3.2171 3.0356 1.4424 8 8 3.5570 3.3895 2.7845 9 6 4.2433 4.5490 2.9620 10 6 4.6052 4.9538 4.2385 11 6 5.3033 6.1326 4.4162 12 6 5.6360 6.9118 3.3235 13 6 6.3921 8.2003 3.5207 14 9 7.7669 7.9476 3.4648 15 9 6.0427 9.1050 2.5124 16 9 6.0684 8.7447 4.7682 17 6 5.2813 6.5076 2.0497 18 6 4.5833 5.3297 1.8667 19 6 2.1388 -1.1672 -0.0005 20 8 3.3557 -1.1672 -0.0010 21 6 1.4069 -2.4349 -0.0005 22 1 0.3269 -2.4348 0.0003 23 6 2.1071 -3.6478 -0.0005 24 7 3.4137 -3.6478 -0.0010 25 14 1.1730 -5.2655 0.0002 26 1 0.3188 -5.3443 -1.2119 27 1 2.1379 -6.3942 0.0007 28 1 0.3197 -5.3438 1.2130 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.6084 2.0283 -0.5139 33 1 3.1499 1.1383 -0.5139 34 1 0.6269 2.5439 1.7127 35 1 2.5918 3.8158 1.0083 36 1 4.1277 2.9297 0.8529 37 1 4.3414 4.3480 5.0928 38 1 5.5849 6.4484 5.4099 39 1 5.5460 7.1159 1.1974 40 1 4.3029 5.0165 0.8718 41 1 3.8988 -4.4879 -0.0014 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356896724.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:16:18 Heat of formation + Delta-G solvation = -269.331389 kcal Electronic energy + Delta-G solvation = -29618.498447 eV Core-core repulsion = 24662.156901 eV Total energy + Delta-G solvation = -4956.341546 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.118 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -51.16722 -48.68492 -48.63595 -41.40968 -40.04836 -38.93356 -37.73260 -35.43496 -34.58375 -32.73897 -32.16974 -31.63535 -28.90723 -27.67405 -26.65013 -25.91593 -24.25574 -23.05982 -22.55088 -21.20432 -19.66373 -19.48479 -19.39981 -19.01652 -18.51411 -17.83812 -17.67330 -17.33097 -16.67510 -16.27456 -16.07609 -16.01893 -15.58192 -15.52780 -15.44051 -15.35709 -15.09736 -14.89525 -14.86873 -14.79595 -14.48152 -14.33335 -14.20826 -13.88872 -13.66333 -13.35474 -13.12599 -13.04937 -12.72186 -12.70529 -12.67196 -12.33750 -12.16278 -12.11561 -12.05278 -11.85164 -11.25746 -10.90700 -10.22583 -9.80215 -9.55509 -9.03312 -8.28848 -6.83302 -0.07993 0.15101 1.39362 1.42398 1.53813 1.65450 1.91225 2.24528 2.38784 2.46970 2.74126 2.90314 3.01996 3.42303 3.43159 3.56751 3.62375 3.72927 3.83622 3.93745 4.01594 4.13865 4.22137 4.28708 4.34794 4.46124 4.62720 4.74926 4.82028 4.88953 4.95001 5.04183 5.08908 5.10040 5.15485 5.38341 5.47152 5.76543 6.14648 6.22550 6.40867 6.88305 6.88867 7.39958 8.46992 8.67290 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.026732 B = 0.001805 C = 0.001773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.187886 B =15512.351528 C =15787.381682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.643 5.643 3 C 0.102 3.898 4 C 0.108 3.892 5 H 0.056 0.944 6 O -0.558 6.558 7 C 0.036 3.964 8 O -0.319 6.319 9 C 0.149 3.851 10 C -0.166 4.166 11 C -0.029 4.029 12 C -0.238 4.238 13 C 0.517 3.483 14 F -0.183 7.183 15 F -0.179 7.179 16 F -0.180 7.180 17 C -0.029 4.029 18 C -0.214 4.214 19 C 0.537 3.463 20 O -0.630 6.630 21 C -0.570 4.570 22 H 0.091 0.909 23 C 0.028 3.972 24 N -0.822 5.822 25 Si 0.993 3.007 26 H -0.252 1.252 27 H -0.276 1.276 28 H -0.256 1.256 29 H 0.045 0.955 30 H 0.054 0.946 31 H 0.084 0.916 32 H 0.112 0.888 33 H 0.060 0.940 34 H 0.386 0.614 35 H 0.107 0.893 36 H 0.081 0.919 37 H 0.147 0.853 38 H 0.159 0.841 39 H 0.157 0.843 40 H 0.158 0.842 41 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.009 23.290 4.466 23.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.378 5.378 3 C -0.023 4.023 4 C 0.046 3.954 5 H 0.075 0.925 6 O -0.365 6.365 7 C -0.040 4.040 8 O -0.232 6.232 9 C 0.103 3.897 10 C -0.184 4.184 11 C -0.047 4.047 12 C -0.240 4.240 13 C 0.463 3.537 14 F -0.165 7.165 15 F -0.161 7.161 16 F -0.161 7.161 17 C -0.047 4.047 18 C -0.232 4.232 19 C 0.343 3.657 20 O -0.518 6.518 21 C -0.606 4.606 22 H 0.109 0.891 23 C -0.187 4.187 24 N -0.451 5.451 25 Si 0.812 3.188 26 H -0.176 1.176 27 H -0.201 1.201 28 H -0.180 1.180 29 H 0.063 0.937 30 H 0.073 0.927 31 H 0.103 0.897 32 H 0.130 0.870 33 H 0.079 0.921 34 H 0.235 0.765 35 H 0.125 0.875 36 H 0.099 0.901 37 H 0.165 0.835 38 H 0.177 0.823 39 H 0.174 0.826 40 H 0.176 0.824 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.025 22.641 4.976 23.181 hybrid contribution 0.048 -0.259 -0.427 0.501 sum 0.023 22.382 4.549 22.840 Atomic orbital electron populations 1.21569 0.79202 1.02701 1.00508 1.47662 1.07087 1.04558 1.78542 1.21682 0.98563 0.87407 0.94605 1.22138 0.84799 0.94194 0.94242 0.92533 1.86673 1.28824 1.64273 1.56774 1.23676 1.01079 0.97732 0.81494 1.86187 1.69165 1.36864 1.30965 1.19580 0.89939 0.85134 0.95096 1.20624 1.03505 0.98559 0.95735 1.20916 0.93007 0.91664 0.99121 1.19938 1.09928 0.97195 0.96933 1.18176 0.77267 0.84583 0.73627 1.93219 1.32976 1.94235 1.96053 1.93178 1.91859 1.70116 1.60910 1.93182 1.92484 1.87489 1.42932 1.20955 0.92670 0.94894 0.96145 1.21487 1.05382 0.96913 0.99429 1.18622 0.86639 0.84394 0.76005 1.90541 1.16121 1.87603 1.57487 1.21523 0.94888 0.90044 1.54178 0.89083 1.26982 0.95508 1.04951 0.91295 1.70180 1.09470 1.28875 1.36610 0.85139 0.78299 0.75003 0.80317 1.17583 1.20067 1.18017 0.93654 0.92743 0.89731 0.86986 0.92147 0.76479 0.87472 0.90104 0.83523 0.82330 0.82555 0.82421 0.91697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.41 9.89 127.77 1.26 4.68 16 2 N -0.64 -27.46 2.80 -851.92 -2.38 -29.85 16 3 C 0.10 3.37 5.10 86.38 0.44 3.81 16 4 C 0.11 3.39 3.52 30.59 0.11 3.50 16 5 H 0.06 2.45 8.14 -2.38 -0.02 2.43 16 6 O -0.56 -16.21 12.02 -144.32 -1.74 -17.94 16 7 C 0.04 0.81 4.37 71.99 0.31 1.12 16 8 O -0.32 -8.43 10.10 -87.75 -0.89 -9.32 16 9 C 0.15 3.27 6.69 22.50 0.15 3.42 16 10 C -0.17 -3.27 9.99 22.37 0.22 -3.05 16 11 C -0.03 -0.49 9.39 22.26 0.21 -0.28 16 12 C -0.24 -4.11 5.45 -19.85 -0.11 -4.22 16 13 C 0.52 8.86 3.36 71.23 0.24 9.10 16 14 F -0.18 -3.46 17.30 44.97 0.78 -2.68 16 15 F -0.18 -3.07 16.47 44.97 0.74 -2.33 16 16 F -0.18 -3.11 16.46 44.97 0.74 -2.37 16 17 C -0.03 -0.46 9.39 22.25 0.21 -0.25 16 18 C -0.21 -3.73 9.04 22.36 0.20 -3.53 16 19 C 0.54 30.61 7.61 86.36 0.66 31.27 16 20 O -0.63 -41.31 14.60 -4.31 -0.06 -41.37 16 21 C -0.57 -32.00 8.74 24.83 0.22 -31.79 16 22 H 0.09 4.57 6.00 -2.91 -0.02 4.56 16 23 C 0.03 1.54 5.50 85.31 0.47 2.01 16 24 N -0.82 -50.32 11.83 21.84 0.26 -50.07 16 25 Si 0.99 40.88 29.56 68.60 2.03 42.91 16 26 H -0.25 -9.66 7.11 99.48 0.71 -8.95 16 27 H -0.28 -11.02 7.11 99.48 0.71 -10.31 16 28 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 29 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.05 1.99 6.09 -2.39 -0.01 1.98 16 31 H 0.08 2.11 6.88 -2.39 -0.02 2.09 16 32 H 0.11 2.49 8.07 -2.38 -0.02 2.47 16 33 H 0.06 2.31 7.42 -2.39 -0.02 2.29 16 34 H 0.39 6.84 8.79 -74.06 -0.65 6.19 16 35 H 0.11 1.55 7.66 -2.39 -0.02 1.53 16 36 H 0.08 1.75 7.66 -2.39 -0.02 1.74 16 37 H 0.15 2.68 8.06 -2.91 -0.02 2.66 16 38 H 0.16 1.98 7.60 -2.91 -0.02 1.95 16 39 H 0.16 1.82 7.61 -2.91 -0.02 1.80 16 40 H 0.16 2.09 6.30 -2.91 -0.02 2.08 16 41 H 0.27 15.23 8.29 -92.70 -0.77 14.47 16 Total: -1.00 -80.73 363.21 4.53 -76.20 By element: Atomic # 1 Polarization: 20.57 SS G_CDS: 0.45 Total: 21.02 kcal Atomic # 6 Polarization: 11.20 SS G_CDS: 4.60 Total: 15.79 kcal Atomic # 7 Polarization: -77.79 SS G_CDS: -2.12 Total: -79.91 kcal Atomic # 8 Polarization: -65.95 SS G_CDS: -2.68 Total: -68.63 kcal Atomic # 9 Polarization: -9.64 SS G_CDS: 2.26 Total: -7.38 kcal Atomic # 14 Polarization: 40.88 SS G_CDS: 2.03 Total: 42.91 kcal Total: -80.73 4.53 -76.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356896724.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -193.129 kcal (2) G-P(sol) polarization free energy of solvation -80.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -273.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -269.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds