Wall clock time and date at job start Wed Apr 1 2020 04:05:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 S 1.81404 * 109.46867 * 2 1 4 4 O 1.42091 * 108.57697 * 65.51881 * 3 2 1 5 5 O 1.42098 * 108.57840 * 294.48936 * 3 2 1 6 6 C 1.81399 * 101.91985 * 180.02562 * 3 2 1 7 7 C 1.52993 * 109.47291 * 179.97438 * 6 3 2 8 8 C 1.53006 * 109.47478 * 180.02562 * 7 6 3 9 9 C 1.52999 * 109.47000 * 180.02562 * 8 7 6 10 10 C 1.53006 * 109.46626 * 180.02562 * 9 8 7 11 11 S 1.81003 * 109.46900 * 179.97438 * 10 9 8 12 12 C 1.76196 * 99.99843 * 179.97438 * 11 10 9 13 13 N 1.32384 * 126.26068 * 0.02562 * 12 11 10 14 14 N 1.28520 * 110.20547 * 179.97438 * 13 12 11 15 15 C 1.33093 * 109.74185 * 0.02562 * 14 13 12 16 16 C 1.39776 * 126.56154 * 180.02562 * 15 14 13 17 17 H 1.07998 * 120.00133 * 179.97438 * 16 15 14 18 18 C 1.40086 * 120.00106 * 359.97438 * 16 15 14 19 19 N 1.30808 * 119.99735 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00029 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47299 * 89.99836 * 20 18 16 22 22 H 1.48501 * 109.47128 * 209.99714 * 20 18 16 23 23 H 1.48504 * 109.47191 * 329.99688 * 20 18 16 24 24 N 1.36678 * 126.25741 * 179.71870 * 12 11 10 25 25 C 1.46502 * 127.15172 * 359.96573 * 24 12 11 26 26 H 1.08997 * 109.47496 * 59.99494 * 1 2 3 27 27 H 1.09002 * 109.47241 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47199 * 299.99861 * 1 2 3 29 29 H 1.08999 * 109.46718 * 240.00195 * 2 1 3 30 30 H 1.08997 * 109.47496 * 120.00506 * 2 1 3 31 31 H 1.09004 * 109.47089 * 60.00212 * 6 3 2 32 32 H 1.09004 * 109.47568 * 300.00202 * 6 3 2 33 33 H 1.09004 * 109.46862 * 60.00096 * 7 6 3 34 34 H 1.09000 * 109.47250 * 300.00119 * 7 6 3 35 35 H 1.08993 * 109.46765 * 59.99818 * 8 7 6 36 36 H 1.09000 * 109.46866 * 300.00218 * 8 7 6 37 37 H 1.08993 * 109.47839 * 60.00073 * 9 8 7 38 38 H 1.09000 * 109.47160 * 299.99635 * 9 8 7 39 39 H 1.09000 * 109.47050 * 299.99699 * 10 9 8 40 40 H 1.09001 * 109.46801 * 59.99811 * 10 9 8 41 41 H 0.97001 * 119.99909 * 180.02562 * 19 18 16 42 42 H 1.08999 * 109.46750 * 90.02416 * 25 24 12 43 43 H 1.09001 * 109.47126 * 210.02884 * 25 24 12 44 44 H 1.09003 * 109.46864 * 330.02731 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 8 1.7592 2.3231 1.2258 5 8 1.7591 2.3232 -1.2258 6 6 3.9329 1.4720 -0.0008 7 6 4.6280 2.8349 -0.0015 8 6 6.1448 2.6340 -0.0028 9 6 6.8398 3.9970 -0.0029 10 6 8.3566 3.7959 -0.0049 11 16 9.1789 5.4084 -0.0058 12 6 10.8636 4.8926 -0.0072 13 7 11.2999 3.6427 -0.0079 14 7 12.5849 3.6211 -0.0095 15 6 13.0555 4.8660 -0.0092 16 6 14.4001 5.2478 -0.0110 17 1 14.6641 6.2951 -0.0110 18 6 15.4053 4.2722 -0.0128 19 7 15.0856 3.0038 -0.0123 20 14 17.2022 4.7825 -0.0146 21 1 17.6800 4.9168 1.3851 22 1 18.0088 3.7518 -0.7162 23 1 17.3464 6.0846 -0.7140 24 7 11.9592 5.7098 -0.0136 25 6 11.9702 7.1748 -0.0214 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8932 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 4.2252 0.9150 -0.8910 32 1 4.2260 0.9147 0.8890 33 1 4.3357 3.3923 0.8885 34 1 4.3349 3.3918 -0.8915 35 1 6.4366 2.0768 -0.8930 36 1 6.4382 2.0769 0.8869 37 1 6.5479 4.5538 0.8874 38 1 6.5464 4.5544 -0.8925 39 1 8.6503 3.2384 0.8845 40 1 8.6481 3.2393 -0.8955 41 1 15.7816 2.3282 -0.0132 42 1 11.9753 7.5435 1.0044 43 1 12.8616 7.5287 -0.5393 44 1 11.0816 7.5421 -0.5350 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357080180.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:47 Heat of formation + Delta-G solvation = -28.410226 kcal Electronic energy + Delta-G solvation = -24473.349260 eV Core-core repulsion = 20679.801154 eV Total energy + Delta-G solvation = -3793.548107 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.112 amu Computer time = 2.11 seconds Orbital eigenvalues (eV) -40.50433 -37.34471 -36.63387 -36.32870 -33.70790 -33.66393 -33.34562 -32.57859 -29.34134 -27.51076 -26.48148 -25.54445 -24.63917 -22.51137 -21.39991 -20.79252 -20.29187 -19.22867 -17.36068 -17.31810 -16.86643 -16.24477 -16.14669 -15.98454 -15.44483 -14.95542 -14.72837 -14.58455 -14.35061 -13.98489 -13.92905 -13.52073 -13.27321 -13.03294 -12.77279 -12.69038 -12.44286 -12.35657 -12.29402 -12.23855 -12.07827 -11.81206 -11.54407 -11.43657 -11.31483 -11.29144 -11.09407 -10.94202 -10.73298 -10.55205 -10.36838 -10.13412 -9.72543 -9.62388 -8.70319 -8.42890 -8.38843 -6.83676 -6.66055 -4.58288 -0.46165 2.07590 2.32845 2.85413 2.90787 3.05334 3.08823 3.17451 3.35737 3.56367 3.86278 4.09176 4.13334 4.16217 4.23900 4.41589 4.41743 4.63089 4.67375 4.85502 5.03286 5.06819 5.13818 5.18338 5.23191 5.31632 5.41671 5.46368 5.54856 5.55660 5.68122 5.72081 5.88712 5.99461 6.04259 6.10840 6.28060 6.76830 6.88209 7.23336 7.48369 7.88643 8.16868 8.69220 8.85232 10.26610 10.63252 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.031191 B = 0.001537 C = 0.001481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.484885 B =18215.224784 C =18900.770152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.617 4.617 3 S 2.413 3.587 4 O -0.938 6.938 5 O -0.938 6.938 6 C -0.609 4.609 7 C -0.112 4.112 8 C -0.106 4.106 9 C -0.108 4.108 10 C -0.089 4.089 11 S -0.064 6.064 12 C 0.049 3.951 13 N -0.287 5.287 14 N -0.334 5.334 15 C 0.346 3.654 16 C -0.448 4.448 17 H 0.084 0.916 18 C 0.078 3.922 19 N -0.737 5.737 20 Si 0.921 3.079 21 H -0.268 1.268 22 H -0.275 1.275 23 H -0.262 1.262 24 N -0.516 5.516 25 C 0.102 3.898 26 H 0.073 0.927 27 H 0.080 0.920 28 H 0.073 0.927 29 H 0.132 0.868 30 H 0.132 0.868 31 H 0.134 0.866 32 H 0.134 0.866 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.279 0.721 42 H 0.056 0.944 43 H 0.077 0.923 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.254 -3.647 -0.065 22.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.745 4.745 3 S 2.596 3.404 4 O -0.935 6.935 5 O -0.935 6.935 6 C -0.739 4.739 7 C -0.151 4.151 8 C -0.147 4.147 9 C -0.147 4.147 10 C -0.238 4.238 11 S 0.163 5.837 12 C -0.323 4.323 13 N -0.133 5.133 14 N -0.181 5.181 15 C 0.101 3.899 16 C -0.488 4.488 17 H 0.102 0.898 18 C -0.147 4.147 19 N -0.361 5.361 20 Si 0.745 3.255 21 H -0.194 1.194 22 H -0.200 1.200 23 H -0.186 1.186 24 N -0.218 5.218 25 C -0.043 4.043 26 H 0.092 0.908 27 H 0.099 0.901 28 H 0.092 0.908 29 H 0.150 0.850 30 H 0.150 0.850 31 H 0.152 0.848 32 H 0.152 0.848 33 H 0.100 0.900 34 H 0.100 0.900 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.108 0.892 40 H 0.108 0.892 41 H 0.090 0.910 42 H 0.074 0.926 43 H 0.096 0.904 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -23.197 -3.543 -0.073 23.467 hybrid contribution 2.148 -0.456 0.016 2.195 sum -21.050 -3.999 -0.057 21.426 Atomic orbital electron populations 1.21517 0.90397 1.04873 1.03794 1.30234 1.07578 1.25179 1.11540 1.08251 0.78500 0.78191 0.75463 1.93594 1.81255 1.73100 1.45537 1.93595 1.81260 1.73097 1.45538 1.30330 1.24020 1.07682 1.11828 1.21366 0.96981 0.92622 1.04145 1.21529 0.92322 0.97475 1.03331 1.21393 0.92431 0.97538 1.03351 1.23288 0.96278 0.97446 1.06837 1.84367 0.91999 1.11602 1.95701 1.25319 0.92481 0.91590 1.22937 1.74522 1.07841 1.14972 1.15955 1.75454 0.97682 1.15467 1.29536 1.21624 0.88582 0.84645 0.95040 1.18107 0.86449 0.94710 1.49510 0.89793 1.25798 1.01312 0.94330 0.93287 1.70010 1.35127 1.00576 1.30412 0.86117 0.80823 0.79383 0.79192 1.19363 1.19985 1.18645 1.46050 1.05340 1.06133 1.64306 1.21490 1.02693 0.78512 1.01618 0.90790 0.90108 0.90796 0.85001 0.85001 0.84793 0.84792 0.89979 0.89980 0.91014 0.91018 0.90872 0.90887 0.89210 0.89226 0.90994 0.92574 0.90381 0.91511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.67 9.92 37.16 0.37 -0.30 16 2 C -0.62 -2.21 6.53 37.16 0.24 -1.97 16 3 S 2.41 16.03 4.72 -107.50 -0.51 15.53 16 4 O -0.94 -9.69 18.10 -57.83 -1.05 -10.73 16 5 O -0.94 -9.69 18.10 -57.83 -1.05 -10.73 16 6 C -0.61 -3.08 5.81 37.15 0.22 -2.87 16 7 C -0.11 -0.86 5.22 -26.73 -0.14 -1.00 16 8 C -0.11 -0.94 5.21 -26.73 -0.14 -1.08 16 9 C -0.11 -1.19 5.22 -26.73 -0.14 -1.33 16 10 C -0.09 -1.36 5.22 37.16 0.19 -1.16 16 11 S -0.06 -1.16 21.78 -107.50 -2.34 -3.50 16 12 C 0.05 1.18 8.09 -87.27 -0.71 0.47 16 13 N -0.29 -7.92 11.62 30.89 0.36 -7.56 16 14 N -0.33 -10.11 10.48 31.26 0.33 -9.78 16 15 C 0.35 9.75 7.53 -154.82 -1.17 8.59 16 16 C -0.45 -11.92 9.04 -38.31 -0.35 -12.27 16 17 H 0.08 2.02 7.31 -52.49 -0.38 1.64 16 18 C 0.08 2.00 5.50 -17.29 -0.10 1.91 16 19 N -0.74 -20.29 11.94 55.56 0.66 -19.63 16 20 Si 0.92 18.52 29.56 -169.99 -5.03 13.49 16 21 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 22 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 23 H -0.26 -5.11 7.11 56.52 0.40 -4.70 16 24 N -0.52 -12.64 3.26 -123.18 -0.40 -13.04 16 25 C 0.10 1.89 10.87 59.85 0.65 2.54 16 26 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 27 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.13 0.22 8.14 -51.92 -0.42 -0.21 16 30 H 0.13 0.22 8.14 -51.93 -0.42 -0.21 16 31 H 0.13 0.41 8.14 -51.92 -0.42 -0.01 16 32 H 0.13 0.41 8.14 -51.92 -0.42 -0.01 16 33 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.09 1.46 8.14 -51.92 -0.42 1.04 16 40 H 0.09 1.46 8.14 -51.91 -0.42 1.04 16 41 H 0.28 6.91 8.30 -40.82 -0.34 6.57 16 42 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.08 1.35 7.54 -51.93 -0.39 0.96 16 44 H 0.07 1.09 7.85 -51.93 -0.41 0.68 16 LS Contribution 396.28 15.07 5.97 5.97 Total: -1.00 -38.79 396.28 -11.19 -49.97 By element: Atomic # 1 Polarization: 5.57 SS G_CDS: -7.08 Total: -1.51 kcal Atomic # 6 Polarization: -7.40 SS G_CDS: -1.06 Total: -8.46 kcal Atomic # 7 Polarization: -50.97 SS G_CDS: 0.95 Total: -50.02 kcal Atomic # 8 Polarization: -19.37 SS G_CDS: -2.09 Total: -21.47 kcal Atomic # 14 Polarization: 18.52 SS G_CDS: -5.03 Total: 13.49 kcal Atomic # 16 Polarization: 14.87 SS G_CDS: -2.85 Total: 12.02 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -38.79 -11.19 -49.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357080180.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.563 kcal (2) G-P(sol) polarization free energy of solvation -38.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.11 seconds