Wall clock time and date at job start Wed Apr 1 2020 04:05:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 S 1.81404 * 109.46867 * 2 1 4 4 O 1.42091 * 108.57697 * 65.51881 * 3 2 1 5 5 O 1.42098 * 108.57840 * 294.48936 * 3 2 1 6 6 C 1.81399 * 101.91985 * 180.02562 * 3 2 1 7 7 C 1.52993 * 109.47291 * 179.97438 * 6 3 2 8 8 C 1.53006 * 109.47478 * 180.02562 * 7 6 3 9 9 C 1.52999 * 109.47000 * 180.02562 * 8 7 6 10 10 C 1.53006 * 109.46626 * 180.02562 * 9 8 7 11 11 S 1.81003 * 109.46900 * 179.97438 * 10 9 8 12 12 C 1.76196 * 99.99843 * 179.97438 * 11 10 9 13 13 N 1.32384 * 126.26068 * 0.02562 * 12 11 10 14 14 N 1.28520 * 110.20547 * 179.97438 * 13 12 11 15 15 C 1.33093 * 109.74185 * 0.02562 * 14 13 12 16 16 C 1.39776 * 126.56154 * 180.02562 * 15 14 13 17 17 H 1.07998 * 120.00133 * 179.97438 * 16 15 14 18 18 C 1.40086 * 120.00106 * 359.97438 * 16 15 14 19 19 N 1.30808 * 119.99735 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00029 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47299 * 89.99836 * 20 18 16 22 22 H 1.48501 * 109.47128 * 209.99714 * 20 18 16 23 23 H 1.48504 * 109.47191 * 329.99688 * 20 18 16 24 24 N 1.36678 * 126.25741 * 179.71870 * 12 11 10 25 25 C 1.46502 * 127.15172 * 359.96573 * 24 12 11 26 26 H 1.08997 * 109.47496 * 59.99494 * 1 2 3 27 27 H 1.09002 * 109.47241 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47199 * 299.99861 * 1 2 3 29 29 H 1.08999 * 109.46718 * 240.00195 * 2 1 3 30 30 H 1.08997 * 109.47496 * 120.00506 * 2 1 3 31 31 H 1.09004 * 109.47089 * 60.00212 * 6 3 2 32 32 H 1.09004 * 109.47568 * 300.00202 * 6 3 2 33 33 H 1.09004 * 109.46862 * 60.00096 * 7 6 3 34 34 H 1.09000 * 109.47250 * 300.00119 * 7 6 3 35 35 H 1.08993 * 109.46765 * 59.99818 * 8 7 6 36 36 H 1.09000 * 109.46866 * 300.00218 * 8 7 6 37 37 H 1.08993 * 109.47839 * 60.00073 * 9 8 7 38 38 H 1.09000 * 109.47160 * 299.99635 * 9 8 7 39 39 H 1.09000 * 109.47050 * 299.99699 * 10 9 8 40 40 H 1.09001 * 109.46801 * 59.99811 * 10 9 8 41 41 H 0.97001 * 119.99909 * 180.02562 * 19 18 16 42 42 H 1.08999 * 109.46750 * 90.02416 * 25 24 12 43 43 H 1.09001 * 109.47126 * 210.02884 * 25 24 12 44 44 H 1.09003 * 109.46864 * 330.02731 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 8 1.7592 2.3231 1.2258 5 8 1.7591 2.3232 -1.2258 6 6 3.9329 1.4720 -0.0008 7 6 4.6280 2.8349 -0.0015 8 6 6.1448 2.6340 -0.0028 9 6 6.8398 3.9970 -0.0029 10 6 8.3566 3.7959 -0.0049 11 16 9.1789 5.4084 -0.0058 12 6 10.8636 4.8926 -0.0072 13 7 11.2999 3.6427 -0.0079 14 7 12.5849 3.6211 -0.0095 15 6 13.0555 4.8660 -0.0092 16 6 14.4001 5.2478 -0.0110 17 1 14.6641 6.2951 -0.0110 18 6 15.4053 4.2722 -0.0128 19 7 15.0856 3.0038 -0.0123 20 14 17.2022 4.7825 -0.0146 21 1 17.6800 4.9168 1.3851 22 1 18.0088 3.7518 -0.7162 23 1 17.3464 6.0846 -0.7140 24 7 11.9592 5.7098 -0.0136 25 6 11.9702 7.1748 -0.0214 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8932 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 4.2252 0.9150 -0.8910 32 1 4.2260 0.9147 0.8890 33 1 4.3357 3.3923 0.8885 34 1 4.3349 3.3918 -0.8915 35 1 6.4366 2.0768 -0.8930 36 1 6.4382 2.0769 0.8869 37 1 6.5479 4.5538 0.8874 38 1 6.5464 4.5544 -0.8925 39 1 8.6503 3.2384 0.8845 40 1 8.6481 3.2393 -0.8955 41 1 15.7816 2.3282 -0.0132 42 1 11.9753 7.5435 1.0044 43 1 12.8616 7.5287 -0.5393 44 1 11.0816 7.5421 -0.5350 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357080180.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:46 Heat of formation + Delta-G solvation = -54.960793 kcal Electronic energy + Delta-G solvation = -24474.500579 eV Core-core repulsion = 20679.801154 eV Total energy + Delta-G solvation = -3794.699426 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.112 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.45612 -37.97020 -37.34747 -36.97801 -35.63190 -35.16479 -33.97712 -33.40508 -31.31655 -28.51884 -28.05896 -27.36801 -25.09993 -23.39514 -22.77949 -22.31539 -21.85661 -19.75271 -19.26227 -17.87874 -17.77247 -17.39433 -17.22163 -16.78319 -16.77744 -16.48549 -16.19534 -15.46961 -15.42661 -15.05765 -15.02047 -14.52183 -13.99151 -13.97272 -13.83467 -13.60910 -13.50289 -13.36073 -13.17100 -13.10165 -13.00794 -12.94803 -12.78914 -12.59177 -12.36359 -12.32071 -12.16393 -11.98257 -11.75290 -11.66936 -11.54853 -11.51168 -11.42580 -11.00831 -10.58248 -10.37012 -10.27871 -8.55155 -8.53127 -6.59233 -0.92907 0.49286 1.19244 1.33370 1.41464 1.57921 1.61576 1.90383 2.18270 2.44091 2.50586 2.70665 3.13210 3.33061 3.61703 3.77894 3.81474 3.82275 3.94821 4.05394 4.07132 4.37387 4.41692 4.43225 4.43647 4.44212 4.60569 4.72022 4.74664 4.80468 4.82569 4.88151 4.88527 4.93898 4.95874 5.08822 5.12523 5.28201 5.31423 5.38492 5.56004 6.02955 6.21095 6.74956 6.91439 8.40649 8.63483 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.031191 B = 0.001537 C = 0.001481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.484885 B =18215.224784 C =18900.770152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.596 4.596 3 S 2.407 3.593 4 O -0.985 6.985 5 O -0.985 6.985 6 C -0.600 4.600 7 C -0.122 4.122 8 C -0.103 4.103 9 C -0.102 4.102 10 C -0.086 4.086 11 S -0.022 6.022 12 C 0.056 3.944 13 N -0.331 5.331 14 N -0.389 5.389 15 C 0.315 3.685 16 C -0.472 4.472 17 H 0.103 0.897 18 C 0.029 3.971 19 N -0.788 5.788 20 Si 1.007 2.993 21 H -0.261 1.261 22 H -0.270 1.270 23 H -0.248 1.248 24 N -0.524 5.524 25 C 0.094 3.906 26 H 0.067 0.933 27 H 0.100 0.900 28 H 0.067 0.933 29 H 0.160 0.840 30 H 0.160 0.840 31 H 0.160 0.840 32 H 0.160 0.840 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.285 0.715 42 H 0.073 0.927 43 H 0.088 0.912 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.493 -3.436 -0.083 22.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.728 4.728 3 S 2.596 3.404 4 O -0.982 6.982 5 O -0.982 6.982 6 C -0.730 4.730 7 C -0.161 4.161 8 C -0.143 4.143 9 C -0.141 4.141 10 C -0.236 4.236 11 S 0.205 5.795 12 C -0.318 4.318 13 N -0.175 5.175 14 N -0.235 5.235 15 C 0.069 3.931 16 C -0.513 4.513 17 H 0.121 0.879 18 C -0.192 4.192 19 N -0.413 5.413 20 Si 0.826 3.174 21 H -0.186 1.186 22 H -0.195 1.195 23 H -0.171 1.171 24 N -0.225 5.225 25 C -0.049 4.049 26 H 0.086 0.914 27 H 0.119 0.881 28 H 0.086 0.914 29 H 0.178 0.822 30 H 0.178 0.822 31 H 0.178 0.822 32 H 0.178 0.822 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.100 0.900 38 H 0.100 0.900 39 H 0.096 0.904 40 H 0.096 0.904 41 H 0.095 0.905 42 H 0.092 0.908 43 H 0.107 0.893 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -23.463 -3.272 -0.091 23.690 hybrid contribution 2.001 -0.531 0.025 2.071 sum -21.462 -3.803 -0.065 21.796 Atomic orbital electron populations 1.21691 0.91215 1.05976 1.03348 1.30057 1.06807 1.21585 1.14359 1.08081 0.79181 0.79548 0.73581 1.93532 1.82416 1.75481 1.46819 1.93533 1.82420 1.75477 1.46820 1.30228 1.21494 1.06842 1.14476 1.21406 0.96228 0.94323 1.04127 1.21506 0.92855 0.96056 1.03903 1.21431 0.89131 0.99375 1.04210 1.23452 0.98763 0.95651 1.05701 1.84202 0.87276 1.13106 1.94923 1.26472 0.95477 0.91135 1.18730 1.74391 1.07308 1.16967 1.18864 1.75307 0.99010 1.17483 1.31707 1.22063 0.90096 0.85043 0.95941 1.18632 0.86472 0.96018 1.50139 0.87918 1.26995 1.06545 0.93866 0.91803 1.70154 1.37179 1.02238 1.31759 0.84844 0.73591 0.79423 0.79543 1.18555 1.19496 1.17089 1.46406 1.04502 1.08153 1.63448 1.21844 1.04448 0.75287 1.03308 0.91403 0.88113 0.91411 0.82236 0.82237 0.82215 0.82214 0.90183 0.90182 0.90485 0.90497 0.90026 0.90027 0.90388 0.90387 0.90514 0.90818 0.89323 0.89103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.22 9.92 71.98 0.71 -0.50 16 2 C -0.60 -2.60 6.53 71.98 0.47 -2.13 16 3 S 2.41 29.81 4.72 -56.49 -0.27 29.55 16 4 O -0.99 -20.53 18.10 -127.37 -2.30 -22.83 16 5 O -0.99 -20.52 18.10 -127.37 -2.30 -22.83 16 6 C -0.60 -4.54 5.81 71.98 0.42 -4.13 16 7 C -0.12 -1.66 5.22 30.59 0.16 -1.50 16 8 C -0.10 -1.62 5.21 30.60 0.16 -1.46 16 9 C -0.10 -2.07 5.22 30.60 0.16 -1.91 16 10 C -0.09 -2.57 5.22 71.98 0.38 -2.19 16 11 S -0.02 -0.78 21.78 -56.49 -1.23 -2.01 16 12 C 0.06 2.71 8.09 179.18 1.45 4.16 16 13 N -0.33 -18.89 11.62 -56.17 -0.65 -19.54 16 14 N -0.39 -24.52 10.48 -55.02 -0.58 -25.10 16 15 C 0.32 18.24 7.53 133.23 1.00 19.25 16 16 C -0.47 -25.48 9.04 23.09 0.21 -25.27 16 17 H 0.10 4.90 7.31 -2.91 -0.02 4.88 16 18 C 0.03 1.48 5.50 85.29 0.47 1.95 16 19 N -0.79 -44.85 11.94 21.86 0.26 -44.59 16 20 Si 1.01 37.76 29.56 68.60 2.03 39.78 16 21 H -0.26 -9.39 7.11 99.48 0.71 -8.68 16 22 H -0.27 -9.81 7.11 99.48 0.71 -9.10 16 23 H -0.25 -8.60 7.11 99.48 0.71 -7.89 16 24 N -0.52 -25.70 3.26 -543.62 -1.77 -27.47 16 25 C 0.09 3.33 10.87 127.77 1.39 4.72 16 26 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 27 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 28 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.16 -0.11 8.14 -2.39 -0.02 -0.13 16 30 H 0.16 -0.11 8.14 -2.39 -0.02 -0.13 16 31 H 0.16 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.16 0.42 8.14 -2.39 -0.02 0.40 16 33 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 34 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 40 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 41 H 0.28 14.57 8.30 -92.71 -0.77 13.80 16 42 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 43 H 0.09 2.94 7.54 -2.39 -0.02 2.92 16 44 H 0.09 2.75 7.85 -2.39 -0.02 2.73 16 Total: -1.00 -89.71 396.28 1.14 -88.57 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: 0.98 Total: 15.49 kcal Atomic # 6 Polarization: -16.00 SS G_CDS: 6.98 Total: -9.02 kcal Atomic # 7 Polarization: -113.96 SS G_CDS: -2.74 Total: -116.70 kcal Atomic # 8 Polarization: -41.05 SS G_CDS: -4.61 Total: -45.66 kcal Atomic # 14 Polarization: 37.76 SS G_CDS: 2.03 Total: 39.78 kcal Atomic # 16 Polarization: 29.04 SS G_CDS: -1.50 Total: 27.54 kcal Total: -89.71 1.14 -88.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357080180.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.605 kcal (2) G-P(sol) polarization free energy of solvation -89.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds