Wall clock time and date at job start Wed Apr 1 2020 04:13:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46511 * 119.99586 * 2 1 4 4 C 1.50697 * 109.47222 * 270.00086 * 3 2 1 5 5 C 1.31817 * 122.55302 * 259.70985 * 4 3 2 6 6 S 1.75303 * 111.39901 * 180.26825 * 5 4 3 7 7 C 1.75900 * 92.19456 * 0.02562 * 6 5 4 8 8 C 1.39853 * 130.56240 * 179.97438 * 7 6 5 9 9 C 1.37468 * 120.17613 * 179.97438 * 8 7 6 10 10 C 1.38850 * 120.18827 * 0.02562 * 9 8 7 11 11 C 1.36092 * 120.59040 * 359.97438 * 10 9 8 12 12 C 1.39734 * 109.68151 * 359.97438 * 7 6 5 13 13 C 1.34776 * 120.00664 * 180.02562 * 2 1 3 14 14 O 1.21586 * 120.00148 * 179.97438 * 13 2 1 15 15 N 1.34772 * 119.99426 * 0.02562 * 13 2 1 16 16 C 1.46503 * 119.99942 * 179.97438 * 15 13 2 17 17 C 1.50702 * 109.47232 * 179.97438 * 16 15 13 18 18 O 1.21288 * 120.00176 * 0.02562 * 17 16 15 19 19 N 1.34780 * 119.99889 * 179.97438 * 17 16 15 20 20 C 1.37094 * 119.99957 * 180.02562 * 19 17 16 21 21 H 1.07995 * 120.00123 * 0.02562 * 20 19 17 22 22 C 1.38954 * 120.00083 * 180.02562 * 20 19 17 23 23 N 1.31407 * 119.99916 * 180.02562 * 22 20 19 24 24 Si 1.86805 * 119.99776 * 359.97438 * 22 20 19 25 25 H 1.48491 * 109.46971 * 90.00410 * 24 22 20 26 26 H 1.48498 * 109.46967 * 210.00399 * 24 22 20 27 27 H 1.48501 * 109.47259 * 330.00361 * 24 22 20 28 28 H 1.08997 * 109.47174 * 89.99901 * 1 2 3 29 29 H 1.09005 * 109.46814 * 209.99530 * 1 2 3 30 30 H 1.09000 * 109.47261 * 329.99667 * 1 2 3 31 31 H 1.09000 * 109.46648 * 150.00041 * 3 2 1 32 32 H 1.09001 * 109.46731 * 30.00601 * 3 2 1 33 33 H 1.08004 * 124.30374 * 0.29824 * 5 4 3 34 34 H 1.08001 * 119.91399 * 0.02562 * 8 7 6 35 35 H 1.07995 * 119.90218 * 179.97438 * 9 8 7 36 36 H 1.07995 * 119.70239 * 179.97438 * 10 9 8 37 37 H 1.08000 * 119.76917 * 179.97438 * 11 10 9 38 38 H 0.97005 * 120.00344 * 359.97438 * 15 13 2 39 39 H 1.08998 * 109.47494 * 299.99958 * 16 15 13 40 40 H 1.09006 * 109.46917 * 59.99758 * 16 15 13 41 41 H 0.97005 * 120.00010 * 0.02562 * 19 17 16 42 42 H 0.97001 * 119.99515 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2689 0.0000 4 6 2.4486 1.7039 -1.4208 5 6 3.6071 1.5242 -2.0233 6 16 3.5786 2.1450 -3.6626 7 6 1.9073 2.6708 -3.5064 8 6 1.0647 3.3073 -4.4233 9 6 -0.2252 3.6260 -4.0707 10 6 -0.6986 3.3181 -2.8022 11 6 0.1045 2.6988 -1.8947 12 6 1.4335 2.3598 -2.2291 13 6 2.1390 -1.1671 -0.0005 14 8 3.3549 -1.1670 -0.0010 15 7 1.4652 -2.3343 -0.0016 16 6 2.1977 -3.6030 -0.0027 17 6 1.2185 -4.7485 -0.0031 18 8 0.0260 -4.5270 -0.0029 19 7 1.6678 -6.0192 -0.0046 20 6 0.7770 -7.0613 -0.0055 21 1 -0.2848 -6.8640 -0.0054 22 6 1.2402 -8.3713 -0.0066 23 7 0.3863 -9.3701 -0.0079 24 14 3.0768 -8.7125 -0.0075 25 1 3.5640 -8.8040 1.3922 26 1 3.3417 -9.9945 -0.7086 27 1 3.7848 -7.6103 -0.7070 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 -0.8901 0.5138 30 1 -0.3634 0.8899 0.5139 31 1 3.1499 1.1385 0.5138 32 1 1.6083 2.0284 0.5139 33 1 4.4648 1.0539 -1.5655 34 1 1.4281 3.5485 -5.4113 35 1 -0.8719 4.1179 -4.7821 36 1 -1.7132 3.5724 -2.5334 37 1 -0.2773 2.4659 -0.9116 38 1 0.4951 -2.3344 -0.0016 39 1 2.8244 -3.6600 -0.8927 40 1 2.8244 -3.6615 0.8873 41 1 2.6215 -6.1964 -0.0051 42 1 0.7098 -10.2846 -0.0091 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358277152.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:52 Heat of formation + Delta-G solvation = -4.106416 kcal Electronic energy + Delta-G solvation = -27008.251011 eV Core-core repulsion = 23080.312845 eV Total energy + Delta-G solvation = -3927.938166 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.42994 -39.63420 -38.43462 -36.47492 -34.88776 -34.46746 -33.70189 -31.80396 -31.32563 -30.05446 -28.37631 -27.48062 -25.96467 -24.17232 -23.30354 -22.81268 -20.39958 -19.73778 -19.44750 -18.85586 -18.37541 -17.76119 -16.45223 -16.22247 -15.75181 -15.59933 -15.56870 -15.24673 -14.98740 -14.60785 -14.37305 -14.18425 -13.92830 -13.71292 -13.50385 -13.21459 -13.11282 -12.83552 -12.59870 -12.37263 -12.28953 -12.14877 -12.05843 -11.65176 -11.52359 -11.42050 -11.23629 -10.86248 -10.64352 -10.12053 -10.06153 -9.85868 -9.70095 -9.03731 -8.77778 -8.77112 -8.60321 -8.30659 -7.93617 -6.41073 -3.93570 0.49280 0.95006 1.31656 1.76323 1.90236 2.78495 2.99736 3.04379 3.12498 3.28628 3.45083 3.57320 4.00968 4.04131 4.32458 4.43948 4.57291 4.63260 4.81371 4.88997 4.96419 5.01182 5.13601 5.14178 5.29390 5.37375 5.47161 5.50823 5.57571 5.65411 5.68762 5.79146 5.85591 5.86968 6.05316 6.14198 6.23384 6.33777 6.55613 6.63431 6.92184 7.44615 7.99656 8.06770 8.44049 8.68662 8.81431 9.29653 9.63297 10.71102 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.016821 B = 0.002257 C = 0.002192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.168040 B =12401.091733 C =12771.370810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.628 5.628 3 C 0.194 3.806 4 C -0.113 4.113 5 C -0.158 4.158 6 S 0.078 5.922 7 C -0.142 4.142 8 C -0.083 4.083 9 C -0.107 4.107 10 C -0.118 4.118 11 C -0.081 4.081 12 C -0.059 4.059 13 C 0.709 3.291 14 O -0.595 6.595 15 N -0.724 5.724 16 C 0.125 3.875 17 C 0.439 3.561 18 O -0.580 6.580 19 N -0.576 5.576 20 C -0.310 4.310 21 H 0.121 0.879 22 C 0.045 3.955 23 N -0.874 5.874 24 Si 0.879 3.121 25 H -0.269 1.269 26 H -0.275 1.275 27 H -0.267 1.267 28 H 0.056 0.944 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.097 0.903 32 H 0.087 0.913 33 H 0.173 0.827 34 H 0.125 0.875 35 H 0.129 0.871 36 H 0.128 0.872 37 H 0.125 0.875 38 H 0.408 0.592 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.374 0.626 42 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.069 27.678 -4.443 28.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.365 5.365 3 C 0.068 3.932 4 C -0.126 4.126 5 C -0.292 4.292 6 S 0.344 5.656 7 C -0.257 4.257 8 C -0.105 4.105 9 C -0.128 4.128 10 C -0.138 4.138 11 C -0.101 4.101 12 C -0.067 4.067 13 C 0.410 3.590 14 O -0.474 6.474 15 N -0.383 5.383 16 C -0.004 4.004 17 C 0.225 3.775 18 O -0.464 6.464 19 N -0.214 5.214 20 C -0.438 4.438 21 H 0.139 0.861 22 C -0.159 4.159 23 N -0.513 5.513 24 Si 0.705 3.295 25 H -0.194 1.194 26 H -0.200 1.200 27 H -0.192 1.192 28 H 0.075 0.925 29 H 0.093 0.907 30 H 0.091 0.909 31 H 0.115 0.885 32 H 0.105 0.895 33 H 0.190 0.810 34 H 0.143 0.857 35 H 0.147 0.853 36 H 0.145 0.855 37 H 0.143 0.857 38 H 0.248 0.752 39 H 0.101 0.899 40 H 0.101 0.899 41 H 0.208 0.792 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.250 27.540 -5.564 28.416 hybrid contribution -0.099 -0.680 0.923 1.151 sum 4.151 26.859 -4.641 27.571 Atomic orbital electron populations 1.21857 0.79652 1.03192 1.02069 1.46925 1.06336 1.04417 1.78800 1.19894 0.98587 0.83867 0.90811 1.20104 0.92419 1.01558 0.98510 1.25077 1.02369 1.04645 0.97155 1.84164 1.07164 1.61220 1.13086 1.22714 0.98725 1.06164 0.98120 1.20475 0.93289 0.98547 0.98183 1.21038 0.95005 0.99987 0.96799 1.20711 0.99998 0.99309 0.93777 1.20742 0.91542 0.97878 0.99916 1.19137 0.94817 1.00275 0.92475 1.15748 0.85179 0.80261 0.77805 1.90870 1.11456 1.86389 1.58650 1.44917 1.11091 1.03560 1.78696 1.20811 0.94006 0.82347 1.03200 1.19653 0.89257 0.83693 0.84923 1.90527 1.16398 1.83809 1.55689 1.42116 1.08360 1.05462 1.65453 1.19435 0.92360 0.83379 1.48649 0.86092 1.25065 0.98478 0.95225 0.97139 1.69617 1.34220 0.99297 1.48208 0.86672 0.84648 0.79055 0.79142 1.19384 1.19985 1.19199 0.92505 0.90702 0.90875 0.88507 0.89517 0.80992 0.85699 0.85336 0.85455 0.85677 0.75231 0.89944 0.89866 0.79229 0.91390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.71 9.23 59.85 0.55 1.26 16 2 N -0.63 -7.55 2.86 -188.74 -0.54 -8.09 16 3 C 0.19 1.98 5.59 -5.19 -0.03 1.95 16 4 C -0.11 -1.25 5.55 -103.67 -0.58 -1.83 16 5 C -0.16 -1.80 10.72 28.84 0.31 -1.49 16 6 S 0.08 0.83 23.23 -107.50 -2.50 -1.67 16 7 C -0.14 -1.54 6.48 -38.42 -0.25 -1.79 16 8 C -0.08 -0.75 10.07 -39.26 -0.40 -1.14 16 9 C -0.11 -0.82 10.03 -39.64 -0.40 -1.22 16 10 C -0.12 -0.90 9.95 -40.13 -0.40 -1.29 16 11 C -0.08 -0.71 9.42 -39.24 -0.37 -1.08 16 12 C -0.06 -0.63 6.01 -105.38 -0.63 -1.27 16 13 C 0.71 11.19 8.28 -86.92 -0.72 10.47 16 14 O -0.59 -10.80 15.92 5.29 0.08 -10.72 16 15 N -0.72 -11.96 5.39 -66.41 -0.36 -12.32 16 16 C 0.12 2.21 6.15 -5.19 -0.03 2.18 16 17 C 0.44 9.71 7.85 -10.98 -0.09 9.62 16 18 O -0.58 -14.64 15.24 5.55 0.08 -14.56 16 19 N -0.58 -13.45 5.09 -10.96 -0.06 -13.51 16 20 C -0.31 -8.54 10.16 -14.93 -0.15 -8.70 16 21 H 0.12 3.79 7.39 -52.49 -0.39 3.40 16 22 C 0.05 1.21 5.50 -17.47 -0.10 1.11 16 23 N -0.87 -24.98 13.96 55.50 0.77 -24.21 16 24 Si 0.88 19.05 27.74 -169.99 -4.71 14.34 16 25 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 26 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 27 H -0.27 -5.31 6.52 56.52 0.37 -4.94 16 28 H 0.06 0.55 8.03 -51.93 -0.42 0.13 16 29 H 0.07 0.75 6.36 -51.93 -0.33 0.42 16 30 H 0.07 0.47 7.15 -51.93 -0.37 0.10 16 31 H 0.10 1.05 7.34 -51.93 -0.38 0.67 16 32 H 0.09 0.64 7.89 -51.93 -0.41 0.23 16 33 H 0.17 1.92 8.06 -52.48 -0.42 1.50 16 34 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 35 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 36 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 37 H 0.13 0.85 6.50 -52.49 -0.34 0.50 16 38 H 0.41 6.66 5.17 -40.82 -0.21 6.44 16 39 H 0.08 1.40 8.14 -51.93 -0.42 0.97 16 40 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 41 H 0.37 7.73 5.76 -40.82 -0.24 7.50 16 42 H 0.28 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 369.58 15.07 5.57 5.57 Total: -1.00 -33.76 369.58 -9.72 -43.48 By element: Atomic # 1 Polarization: 19.67 SS G_CDS: -4.79 Total: 14.88 kcal Atomic # 6 Polarization: 10.07 SS G_CDS: -3.27 Total: 6.80 kcal Atomic # 7 Polarization: -57.94 SS G_CDS: -0.18 Total: -58.12 kcal Atomic # 8 Polarization: -25.44 SS G_CDS: 0.17 Total: -25.27 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -4.71 Total: 14.34 kcal Atomic # 16 Polarization: 0.83 SS G_CDS: -2.50 Total: -1.67 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.76 -9.72 -43.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358277152.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.370 kcal (2) G-P(sol) polarization free energy of solvation -33.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds