Wall clock time and date at job start Wed Apr 1 2020 04:13:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46511 * 119.99586 * 2 1 4 4 C 1.50697 * 109.47222 * 270.00086 * 3 2 1 5 5 C 1.31817 * 122.55302 * 259.70985 * 4 3 2 6 6 S 1.75303 * 111.39901 * 180.26825 * 5 4 3 7 7 C 1.75900 * 92.19456 * 0.02562 * 6 5 4 8 8 C 1.39853 * 130.56240 * 179.97438 * 7 6 5 9 9 C 1.37468 * 120.17613 * 179.97438 * 8 7 6 10 10 C 1.38850 * 120.18827 * 0.02562 * 9 8 7 11 11 C 1.36092 * 120.59040 * 359.97438 * 10 9 8 12 12 C 1.39734 * 109.68151 * 359.97438 * 7 6 5 13 13 C 1.34776 * 120.00664 * 180.02562 * 2 1 3 14 14 O 1.21586 * 120.00148 * 179.97438 * 13 2 1 15 15 N 1.34772 * 119.99426 * 0.02562 * 13 2 1 16 16 C 1.46503 * 119.99942 * 179.97438 * 15 13 2 17 17 C 1.50702 * 109.47232 * 179.97438 * 16 15 13 18 18 O 1.21288 * 120.00176 * 0.02562 * 17 16 15 19 19 N 1.34780 * 119.99889 * 179.97438 * 17 16 15 20 20 C 1.37094 * 119.99957 * 180.02562 * 19 17 16 21 21 H 1.07995 * 120.00123 * 0.02562 * 20 19 17 22 22 C 1.38954 * 120.00083 * 180.02562 * 20 19 17 23 23 N 1.31407 * 119.99916 * 180.02562 * 22 20 19 24 24 Si 1.86805 * 119.99776 * 359.97438 * 22 20 19 25 25 H 1.48491 * 109.46971 * 90.00410 * 24 22 20 26 26 H 1.48498 * 109.46967 * 210.00399 * 24 22 20 27 27 H 1.48501 * 109.47259 * 330.00361 * 24 22 20 28 28 H 1.08997 * 109.47174 * 89.99901 * 1 2 3 29 29 H 1.09005 * 109.46814 * 209.99530 * 1 2 3 30 30 H 1.09000 * 109.47261 * 329.99667 * 1 2 3 31 31 H 1.09000 * 109.46648 * 150.00041 * 3 2 1 32 32 H 1.09001 * 109.46731 * 30.00601 * 3 2 1 33 33 H 1.08004 * 124.30374 * 0.29824 * 5 4 3 34 34 H 1.08001 * 119.91399 * 0.02562 * 8 7 6 35 35 H 1.07995 * 119.90218 * 179.97438 * 9 8 7 36 36 H 1.07995 * 119.70239 * 179.97438 * 10 9 8 37 37 H 1.08000 * 119.76917 * 179.97438 * 11 10 9 38 38 H 0.97005 * 120.00344 * 359.97438 * 15 13 2 39 39 H 1.08998 * 109.47494 * 299.99958 * 16 15 13 40 40 H 1.09006 * 109.46917 * 59.99758 * 16 15 13 41 41 H 0.97005 * 120.00010 * 0.02562 * 19 17 16 42 42 H 0.97001 * 119.99515 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2689 0.0000 4 6 2.4486 1.7039 -1.4208 5 6 3.6071 1.5242 -2.0233 6 16 3.5786 2.1450 -3.6626 7 6 1.9073 2.6708 -3.5064 8 6 1.0647 3.3073 -4.4233 9 6 -0.2252 3.6260 -4.0707 10 6 -0.6986 3.3181 -2.8022 11 6 0.1045 2.6988 -1.8947 12 6 1.4335 2.3598 -2.2291 13 6 2.1390 -1.1671 -0.0005 14 8 3.3549 -1.1670 -0.0010 15 7 1.4652 -2.3343 -0.0016 16 6 2.1977 -3.6030 -0.0027 17 6 1.2185 -4.7485 -0.0031 18 8 0.0260 -4.5270 -0.0029 19 7 1.6678 -6.0192 -0.0046 20 6 0.7770 -7.0613 -0.0055 21 1 -0.2848 -6.8640 -0.0054 22 6 1.2402 -8.3713 -0.0066 23 7 0.3863 -9.3701 -0.0079 24 14 3.0768 -8.7125 -0.0075 25 1 3.5640 -8.8040 1.3922 26 1 3.3417 -9.9945 -0.7086 27 1 3.7848 -7.6103 -0.7070 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 -0.8901 0.5138 30 1 -0.3634 0.8899 0.5139 31 1 3.1499 1.1385 0.5138 32 1 1.6083 2.0284 0.5139 33 1 4.4648 1.0539 -1.5655 34 1 1.4281 3.5485 -5.4113 35 1 -0.8719 4.1179 -4.7821 36 1 -1.7132 3.5724 -2.5334 37 1 -0.2773 2.4659 -0.9116 38 1 0.4951 -2.3344 -0.0016 39 1 2.8244 -3.6600 -0.8927 40 1 2.8244 -3.6615 0.8873 41 1 2.6215 -6.1964 -0.0051 42 1 0.7098 -10.2846 -0.0091 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358277152.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:51 Heat of formation + Delta-G solvation = -26.603810 kcal Electronic energy + Delta-G solvation = -27009.226571 eV Core-core repulsion = 23080.312845 eV Total energy + Delta-G solvation = -3928.913726 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.51698 -40.57204 -40.08123 -37.37780 -36.29706 -35.82031 -35.16697 -33.83542 -31.97383 -30.80177 -29.65743 -28.44314 -27.16631 -25.83665 -24.03168 -23.50210 -21.55980 -21.37629 -20.73120 -20.28122 -19.39558 -18.85876 -17.67944 -17.31830 -17.19109 -16.78007 -16.49868 -16.35863 -16.14438 -15.87003 -15.69352 -15.23603 -14.92349 -14.74515 -14.67285 -14.41134 -14.33212 -14.08007 -13.97215 -13.57676 -13.52670 -13.16065 -12.99850 -12.95933 -12.45406 -12.36953 -12.22861 -12.12267 -12.01011 -11.59322 -11.58793 -11.32911 -10.66440 -10.57813 -10.35179 -10.27095 -9.64365 -9.48173 -8.69438 -8.46128 -6.07922 -0.23303 0.30033 0.55364 0.97817 1.09866 1.30779 1.33396 1.43230 1.73164 1.77686 2.09860 2.19853 2.69668 2.81786 3.07061 3.10311 3.59336 3.76803 3.96807 4.05568 4.09708 4.22142 4.24955 4.38144 4.41276 4.42321 4.47848 4.56127 4.67732 4.69727 4.83917 4.87183 5.06194 5.13949 5.28626 5.37693 5.43589 5.48186 5.50077 5.57101 5.83982 5.88119 5.96807 6.48163 6.77233 6.86820 7.27400 7.47679 7.77043 8.70255 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.016821 B = 0.002257 C = 0.002192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.168040 B =12401.091733 C =12771.370810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.620 5.620 3 C 0.193 3.807 4 C -0.113 4.113 5 C -0.178 4.178 6 S 0.067 5.933 7 C -0.162 4.162 8 C -0.099 4.099 9 C -0.103 4.103 10 C -0.118 4.118 11 C -0.086 4.086 12 C -0.079 4.079 13 C 0.705 3.295 14 O -0.622 6.622 15 N -0.729 5.729 16 C 0.138 3.862 17 C 0.446 3.554 18 O -0.614 6.614 19 N -0.578 5.578 20 C -0.331 4.331 21 H 0.064 0.936 22 C -0.007 4.007 23 N -0.925 5.925 24 Si 0.958 3.042 25 H -0.256 1.256 26 H -0.273 1.273 27 H -0.234 1.234 28 H 0.055 0.945 29 H 0.066 0.934 30 H 0.110 0.890 31 H 0.087 0.913 32 H 0.121 0.879 33 H 0.167 0.833 34 H 0.137 0.863 35 H 0.156 0.844 36 H 0.157 0.843 37 H 0.146 0.854 38 H 0.409 0.591 39 H 0.097 0.903 40 H 0.103 0.897 41 H 0.392 0.608 42 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.740 29.694 -4.380 30.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.356 5.356 3 C 0.068 3.932 4 C -0.126 4.126 5 C -0.313 4.313 6 S 0.333 5.667 7 C -0.277 4.277 8 C -0.121 4.121 9 C -0.124 4.124 10 C -0.138 4.138 11 C -0.106 4.106 12 C -0.087 4.087 13 C 0.406 3.594 14 O -0.503 6.503 15 N -0.388 5.388 16 C 0.009 3.991 17 C 0.234 3.766 18 O -0.500 6.500 19 N -0.218 5.218 20 C -0.460 4.460 21 H 0.082 0.918 22 C -0.208 4.208 23 N -0.565 5.565 24 Si 0.778 3.222 25 H -0.180 1.180 26 H -0.198 1.198 27 H -0.158 1.158 28 H 0.074 0.926 29 H 0.085 0.915 30 H 0.129 0.871 31 H 0.105 0.895 32 H 0.139 0.861 33 H 0.184 0.816 34 H 0.155 0.845 35 H 0.174 0.826 36 H 0.174 0.826 37 H 0.163 0.837 38 H 0.248 0.752 39 H 0.115 0.885 40 H 0.121 0.879 41 H 0.227 0.773 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 4.908 29.611 -5.504 30.515 hybrid contribution -0.511 -1.165 0.871 1.542 sum 4.396 28.446 -4.633 29.154 Atomic orbital electron populations 1.22053 0.77898 1.04694 1.02478 1.46991 1.07444 1.03737 1.77388 1.20086 0.98788 0.83676 0.90666 1.20253 0.92417 1.01131 0.98798 1.25132 1.02742 1.05703 0.97718 1.84055 1.08128 1.61610 1.12940 1.22968 0.98668 1.07114 0.98967 1.20771 0.93908 0.98805 0.98617 1.21453 0.94614 0.98853 0.97481 1.21129 1.01142 0.98110 0.93386 1.21041 0.90706 0.97665 1.01190 1.19325 0.95774 1.01138 0.92459 1.15897 0.84950 0.80852 0.77714 1.90850 1.12630 1.86874 1.59913 1.44910 1.11062 1.03534 1.79290 1.20683 0.92711 0.80919 1.04785 1.20477 0.89533 0.84333 0.82305 1.90514 1.18517 1.84541 1.56391 1.41922 1.08607 1.04954 1.66279 1.19027 0.90814 0.85374 1.50742 0.91766 1.26052 1.04801 0.94166 0.95731 1.69776 1.37364 1.00074 1.49272 0.85459 0.76909 0.79746 0.80109 1.17989 1.19814 1.15756 0.92601 0.91494 0.87124 0.89467 0.86077 0.81601 0.84549 0.82608 0.82573 0.83652 0.75181 0.88525 0.87886 0.77253 0.90910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.17 9.23 127.77 1.18 2.35 16 2 N -0.62 -13.81 2.86 -869.30 -2.48 -16.30 16 3 C 0.19 3.60 5.59 85.63 0.48 4.08 16 4 C -0.11 -2.41 5.55 -18.80 -0.10 -2.51 16 5 C -0.18 -4.12 10.72 67.04 0.72 -3.40 16 6 S 0.07 1.45 23.23 -56.49 -1.31 0.14 16 7 C -0.16 -3.40 6.48 23.02 0.15 -3.26 16 8 C -0.10 -1.63 10.07 22.48 0.23 -1.41 16 9 C -0.10 -1.29 10.03 22.23 0.22 -1.07 16 10 C -0.12 -1.39 9.95 21.92 0.22 -1.17 16 11 C -0.09 -1.25 9.42 22.49 0.21 -1.04 16 12 C -0.08 -1.58 6.01 -20.35 -0.12 -1.71 16 13 C 0.70 21.41 8.28 179.06 1.48 22.89 16 14 O -0.62 -22.01 15.92 -3.99 -0.06 -22.07 16 15 N -0.73 -23.31 5.39 -482.29 -2.60 -25.92 16 16 C 0.14 4.66 6.15 85.63 0.53 5.19 16 17 C 0.45 19.65 7.85 87.66 0.69 20.34 16 18 O -0.61 -31.67 15.24 -3.05 -0.05 -31.71 16 19 N -0.58 -26.76 5.09 -306.98 -1.56 -28.33 16 20 C -0.33 -18.80 10.16 84.04 0.85 -17.95 16 21 H 0.06 4.30 7.39 -2.91 -0.02 4.28 16 22 C -0.01 -0.40 5.50 84.93 0.47 0.06 16 23 N -0.93 -54.37 13.96 21.66 0.30 -54.07 16 24 Si 0.96 38.31 27.74 68.60 1.90 40.21 16 25 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 26 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 27 H -0.23 -8.07 6.52 99.48 0.65 -7.42 16 28 H 0.06 0.96 8.03 -2.39 -0.02 0.94 16 29 H 0.07 1.24 6.36 -2.38 -0.02 1.22 16 30 H 0.11 0.98 7.15 -2.39 -0.02 0.96 16 31 H 0.09 1.82 7.34 -2.39 -0.02 1.80 16 32 H 0.12 1.40 7.89 -2.39 -0.02 1.38 16 33 H 0.17 3.89 8.06 -2.91 -0.02 3.86 16 34 H 0.14 1.80 8.06 -2.91 -0.02 1.78 16 35 H 0.16 1.02 8.06 -2.91 -0.02 1.00 16 36 H 0.16 0.91 8.06 -2.91 -0.02 0.89 16 37 H 0.15 1.39 6.50 -2.91 -0.02 1.37 16 38 H 0.41 13.09 5.17 -92.70 -0.48 12.61 16 39 H 0.10 3.07 8.14 -2.39 -0.02 3.05 16 40 H 0.10 3.15 8.14 -2.38 -0.02 3.13 16 41 H 0.39 15.31 5.76 -92.70 -0.53 14.77 16 42 H 0.28 15.10 8.31 -92.71 -0.77 14.33 16 Total: -1.00 -77.17 369.58 1.35 -75.82 By element: Atomic # 1 Polarization: 40.80 SS G_CDS: 0.02 Total: 40.82 kcal Atomic # 6 Polarization: 14.20 SS G_CDS: 7.20 Total: 21.40 kcal Atomic # 7 Polarization: -118.26 SS G_CDS: -6.35 Total: -124.61 kcal Atomic # 8 Polarization: -53.68 SS G_CDS: -0.11 Total: -53.79 kcal Atomic # 14 Polarization: 38.31 SS G_CDS: 1.90 Total: 40.21 kcal Atomic # 16 Polarization: 1.45 SS G_CDS: -1.31 Total: 0.14 kcal Total: -77.17 1.35 -75.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358277152.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.220 kcal (2) G-P(sol) polarization free energy of solvation -77.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds