Wall clock time and date at job start Wed Apr 1 2020 04:36:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81407 * 1 3 3 O 1.42092 * 109.47117 * 2 1 4 4 C 1.76198 * 102.99740 * 109.05821 * 2 1 3 5 5 C 1.38235 * 120.00051 * 90.00079 * 4 2 1 6 6 C 1.38231 * 119.99856 * 179.97438 * 5 4 2 7 7 C 1.38229 * 120.00217 * 0.02562 * 6 5 4 8 8 C 1.50706 * 120.00337 * 179.97438 * 7 6 5 9 9 C 1.50696 * 109.47161 * 89.99660 * 8 7 6 10 10 O 1.21294 * 120.00157 * 0.02562 * 9 8 7 11 11 N 1.34777 * 120.00035 * 179.97438 * 9 8 7 12 12 C 1.40158 * 119.99807 * 180.02562 * 11 9 8 13 13 C 1.40410 * 125.97643 * 0.02562 * 12 11 9 14 14 C 1.35238 * 107.86643 * 179.97438 * 13 12 11 15 15 N 1.34965 * 107.86346 * 359.97438 * 14 13 12 16 16 C 1.46502 * 125.97705 * 180.02562 * 15 14 13 17 17 C 1.50697 * 109.47042 * 124.98359 * 16 15 14 18 18 H 1.07998 * 120.00465 * 0.02562 * 17 16 15 19 19 C 1.37881 * 119.99793 * 180.02562 * 17 16 15 20 20 N 1.31510 * 119.99915 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99717 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47256 * 0.02562 * 21 19 17 23 23 H 1.48506 * 109.46842 * 120.00116 * 21 19 17 24 24 H 1.48496 * 109.46920 * 239.99643 * 21 19 17 25 25 N 1.31224 * 125.97071 * 179.97438 * 12 11 9 26 26 C 1.38240 * 120.00023 * 0.25577 * 7 6 5 27 27 C 1.38234 * 119.99811 * 359.46869 * 26 7 6 28 28 H 1.09000 * 109.46832 * 310.94819 * 1 2 3 29 29 H 1.09004 * 109.46954 * 70.94466 * 1 2 3 30 30 H 1.08995 * 109.47181 * 190.93964 * 1 2 3 31 31 H 1.08003 * 119.99940 * 359.97285 * 5 4 2 32 32 H 1.08001 * 120.00164 * 179.97438 * 6 5 4 33 33 H 1.08999 * 109.46922 * 330.00118 * 8 7 6 34 34 H 1.09000 * 109.46854 * 209.99797 * 8 7 6 35 35 H 0.96999 * 119.99686 * 0.02562 * 11 9 8 36 36 H 1.07998 * 126.06328 * 0.02562 * 13 12 11 37 37 H 1.07999 * 126.06766 * 179.97438 * 14 13 12 38 38 H 1.09004 * 109.47046 * 244.98445 * 16 15 14 39 39 H 1.08995 * 109.47139 * 4.98480 * 16 15 14 40 40 H 0.97008 * 119.99677 * 179.97438 * 20 19 17 41 41 H 1.07998 * 119.99908 * 179.73290 * 26 7 6 42 42 H 1.08001 * 120.00364 * 180.29584 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 8 2.2877 1.3397 0.0000 4 6 2.2104 -0.5606 1.6227 5 6 2.3658 -1.9120 1.8684 6 6 2.6772 -2.3518 3.1414 7 6 2.8327 -1.4402 4.1688 8 6 3.1716 -1.9196 5.5568 9 6 4.6690 -1.9751 5.7174 10 8 5.3900 -1.6563 4.7956 11 7 5.2069 -2.3781 6.8856 12 6 6.5996 -2.4292 7.0351 13 6 7.5473 -2.0904 6.0559 14 6 8.7771 -2.2732 6.5880 15 7 8.6192 -2.7102 7.8551 16 6 9.6959 -3.0330 8.7947 17 6 9.5116 -2.2388 10.0620 18 1 8.6758 -1.5616 10.1583 19 6 10.4101 -2.3766 11.0988 20 7 11.4281 -3.2008 10.9814 21 14 10.1811 -1.3926 12.6701 22 1 8.9677 -0.5450 12.5510 23 1 10.0245 -2.3221 13.8177 24 1 11.3690 -0.5293 12.8909 25 7 7.2457 -2.8011 8.1149 26 6 2.6715 -0.0891 3.9244 27 6 2.3657 0.3511 2.6502 28 1 -0.3633 0.6735 0.7762 29 1 -0.3633 0.3355 -0.9714 30 1 -0.3633 -1.0089 0.1950 31 1 2.2440 -2.6243 1.0657 32 1 2.7983 -3.4076 3.3334 33 1 2.7527 -2.9141 5.7100 34 1 2.7527 -1.2316 6.2912 35 1 4.6303 -2.6327 7.6228 36 1 7.3322 -1.7444 5.0557 37 1 9.7184 -2.1002 6.0877 38 1 9.6692 -4.0978 9.0260 39 1 10.6570 -2.7827 8.3457 40 1 12.0604 -3.2975 11.7107 41 1 2.7887 0.6227 4.7281 42 1 2.2444 1.4069 2.4582 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000435446981.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:50 Heat of formation + Delta-G solvation = 37.322336 kcal Electronic energy + Delta-G solvation = -26018.052149 eV Core-core repulsion = 22091.910469 eV Total energy + Delta-G solvation = -3926.141680 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.78592 -39.89713 -38.75590 -36.05424 -34.79313 -33.48166 -33.18493 -31.24257 -31.01147 -29.37115 -29.25526 -28.23687 -26.53308 -23.42201 -23.08101 -22.46582 -21.27441 -20.18719 -19.57103 -18.45372 -17.13351 -16.89390 -16.64334 -16.53499 -16.11917 -15.65817 -15.17791 -15.13782 -15.03295 -14.45796 -14.25702 -14.10988 -14.00215 -13.86986 -13.65181 -13.11908 -12.92212 -12.67177 -12.58385 -12.35579 -12.29524 -12.21519 -11.90933 -11.77316 -11.36876 -11.07010 -10.89911 -10.56027 -10.46123 -10.28654 -10.06254 -9.69357 -9.50877 -9.30314 -9.19842 -8.71060 -8.66061 -8.16344 -7.50212 -6.26738 -4.31755 0.56592 1.13787 1.53493 2.27250 2.33317 2.73771 2.90201 3.20533 3.28109 3.33665 3.36137 3.60352 3.68223 3.90327 4.27795 4.30321 4.46422 4.68769 4.74233 4.76115 4.82848 4.92685 5.06407 5.08608 5.14319 5.31933 5.50792 5.53951 5.57076 5.73908 5.77808 5.93998 5.99002 6.23198 6.23645 6.46538 6.57498 6.65187 6.83827 7.02670 7.37092 7.53673 7.68820 7.86284 8.01676 8.20181 8.60398 8.78002 9.34028 10.82036 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.028344 B = 0.001684 C = 0.001675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.634212 B =16622.440738 C =16716.530823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.499 4.499 2 S 1.332 4.668 3 O -0.857 6.857 4 C -0.463 4.463 5 C -0.043 4.043 6 C -0.121 4.121 7 C -0.027 4.027 8 C -0.105 4.105 9 C 0.519 3.481 10 O -0.507 6.507 11 N -0.631 5.631 12 C 0.256 3.744 13 C -0.287 4.287 14 C 0.051 3.949 15 N -0.318 5.318 16 C 0.258 3.742 17 C -0.528 4.528 18 H 0.069 0.931 19 C 0.062 3.938 20 N -0.894 5.894 21 Si 0.908 3.092 22 H -0.271 1.271 23 H -0.281 1.281 24 H -0.281 1.281 25 N -0.304 5.304 26 C -0.119 4.119 27 C -0.052 4.052 28 H 0.080 0.920 29 H 0.104 0.896 30 H 0.110 0.890 31 H 0.137 0.863 32 H 0.129 0.871 33 H 0.110 0.890 34 H 0.109 0.891 35 H 0.411 0.589 36 H 0.159 0.841 37 H 0.168 0.832 38 H 0.045 0.955 39 H 0.057 0.943 40 H 0.267 0.733 41 H 0.124 0.876 42 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.032 -0.783 -21.072 31.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.656 4.656 2 S 1.529 4.471 3 O -0.853 6.853 4 C -0.560 4.560 5 C -0.062 4.062 6 C -0.140 4.140 7 C -0.027 4.027 8 C -0.145 4.145 9 C 0.304 3.696 10 O -0.380 6.380 11 N -0.279 5.279 12 C 0.003 3.997 13 C -0.319 4.319 14 C -0.099 4.099 15 N -0.100 5.100 16 C 0.140 3.860 17 C -0.567 4.567 18 H 0.087 0.913 19 C -0.141 4.141 20 N -0.533 5.533 21 Si 0.735 3.265 22 H -0.196 1.196 23 H -0.207 1.207 24 H -0.207 1.207 25 N -0.136 5.136 26 C -0.138 4.138 27 C -0.071 4.071 28 H 0.099 0.901 29 H 0.123 0.877 30 H 0.129 0.871 31 H 0.155 0.845 32 H 0.147 0.853 33 H 0.129 0.871 34 H 0.127 0.873 35 H 0.246 0.754 36 H 0.177 0.823 37 H 0.185 0.815 38 H 0.063 0.937 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.142 0.858 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -21.761 -0.782 -21.100 30.321 hybrid contribution -0.952 1.877 2.442 3.224 sum -22.713 1.096 -18.658 29.414 Atomic orbital electron populations 1.27783 1.22751 1.07856 1.07179 1.69479 0.85784 0.99622 0.92230 1.93120 1.73067 1.37216 1.81889 1.27589 1.12637 0.99736 1.15989 1.20770 0.95158 0.93499 0.96823 1.21113 1.00401 0.99639 0.92842 1.19450 0.95516 0.93687 0.94075 1.20728 0.92796 1.04872 0.96060 1.20386 0.90170 0.77252 0.81743 1.90690 1.61871 1.45999 1.39468 1.42471 1.03686 1.66011 1.15750 1.19109 0.83906 1.02620 0.94094 1.21519 0.89789 1.17886 1.02660 1.22570 0.99740 1.00590 0.86962 1.49086 1.03915 1.46936 1.10066 1.19761 0.81126 0.97946 0.87155 1.21293 1.11610 1.25097 0.98689 0.91269 1.24948 0.94715 0.95461 0.98970 1.69927 1.13907 1.36187 1.33270 0.86272 0.78247 0.79735 0.82242 1.19596 1.20676 1.20741 1.77327 0.88924 1.27355 1.19944 1.21100 1.00234 0.95100 0.97349 1.21039 0.94466 0.99368 0.92193 0.90087 0.87742 0.87096 0.84542 0.85341 0.87148 0.87315 0.75385 0.82335 0.81474 0.93685 0.92498 0.92361 0.85796 0.85655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.50 -2.32 10.70 101.05 1.08 -1.24 16 2 S 1.33 8.15 14.19 -107.50 -1.53 6.63 16 3 O -0.86 -11.31 16.90 -35.23 -0.60 -11.91 16 4 C -0.46 -4.00 5.61 -39.58 -0.22 -4.22 16 5 C -0.04 -0.30 9.75 -39.58 -0.39 -0.69 16 6 C -0.12 -1.02 9.70 -39.59 -0.38 -1.40 16 7 C -0.03 -0.26 4.37 -104.62 -0.46 -0.72 16 8 C -0.10 -0.87 5.83 -29.03 -0.17 -1.04 16 9 C 0.52 6.91 7.79 -10.99 -0.09 6.82 16 10 O -0.51 -8.65 13.16 5.55 0.07 -8.58 16 11 N -0.63 -9.20 5.45 -11.13 -0.06 -9.26 16 12 C 0.26 5.04 8.11 -154.38 -1.25 3.79 16 13 C -0.29 -5.70 9.61 -39.83 -0.38 -6.08 16 14 C 0.05 1.03 11.44 -17.24 -0.20 0.83 16 15 N -0.32 -7.38 3.67 -62.56 -0.23 -7.61 16 16 C 0.26 6.53 6.26 -5.19 -0.03 6.50 16 17 C -0.53 -14.69 9.24 -34.44 -0.32 -15.01 16 18 H 0.07 2.00 7.81 -52.49 -0.41 1.59 16 19 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 20 N -0.89 -25.23 13.29 55.43 0.74 -24.49 16 21 Si 0.91 21.33 29.54 -169.99 -5.02 16.30 16 22 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 25 N -0.30 -6.94 12.42 31.44 0.39 -6.55 16 26 C -0.12 -1.28 9.70 -39.58 -0.38 -1.66 16 27 C -0.05 -0.57 9.44 -39.58 -0.37 -0.95 16 28 H 0.08 0.54 8.14 -51.92 -0.42 0.12 16 29 H 0.10 0.38 8.14 -51.92 -0.42 -0.05 16 30 H 0.11 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.14 0.34 8.06 -52.48 -0.42 -0.08 16 32 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 33 H 0.11 0.60 8.09 -51.93 -0.42 0.18 16 34 H 0.11 0.68 8.08 -51.93 -0.42 0.26 16 35 H 0.41 4.67 8.82 -40.82 -0.36 4.31 16 36 H 0.16 3.09 5.92 -52.49 -0.31 2.77 16 37 H 0.17 2.75 8.06 -52.49 -0.42 2.32 16 38 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.06 1.42 8.07 -51.93 -0.42 1.00 16 40 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 41 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 42 H 0.13 1.49 7.45 -52.49 -0.39 1.09 16 LS Contribution 380.30 15.07 5.73 5.73 Total: -1.00 -39.88 380.30 -9.41 -49.29 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -5.25 Total: 3.88 kcal Atomic # 6 Polarization: -9.78 SS G_CDS: -3.66 Total: -13.44 kcal Atomic # 7 Polarization: -48.75 SS G_CDS: 0.84 Total: -47.91 kcal Atomic # 8 Polarization: -19.96 SS G_CDS: -0.52 Total: -20.48 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: 8.15 SS G_CDS: -1.53 Total: 6.63 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -39.88 -9.41 -49.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000435446981.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.612 kcal (2) G-P(sol) polarization free energy of solvation -39.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.290 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds