Wall clock time and date at job start Wed Apr 1 2020 04:36:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81407 * 1 3 3 O 1.42092 * 109.47117 * 2 1 4 4 C 1.76198 * 102.99740 * 109.05821 * 2 1 3 5 5 C 1.38235 * 120.00051 * 90.00079 * 4 2 1 6 6 C 1.38231 * 119.99856 * 179.97438 * 5 4 2 7 7 C 1.38229 * 120.00217 * 0.02562 * 6 5 4 8 8 C 1.50706 * 120.00337 * 179.97438 * 7 6 5 9 9 C 1.50696 * 109.47161 * 89.99660 * 8 7 6 10 10 O 1.21294 * 120.00157 * 0.02562 * 9 8 7 11 11 N 1.34777 * 120.00035 * 179.97438 * 9 8 7 12 12 C 1.40158 * 119.99807 * 180.02562 * 11 9 8 13 13 C 1.40410 * 125.97643 * 0.02562 * 12 11 9 14 14 C 1.35238 * 107.86643 * 179.97438 * 13 12 11 15 15 N 1.34965 * 107.86346 * 359.97438 * 14 13 12 16 16 C 1.46502 * 125.97705 * 180.02562 * 15 14 13 17 17 C 1.50697 * 109.47042 * 124.98359 * 16 15 14 18 18 H 1.07998 * 120.00465 * 0.02562 * 17 16 15 19 19 C 1.37881 * 119.99793 * 180.02562 * 17 16 15 20 20 N 1.31510 * 119.99915 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99717 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47256 * 0.02562 * 21 19 17 23 23 H 1.48506 * 109.46842 * 120.00116 * 21 19 17 24 24 H 1.48496 * 109.46920 * 239.99643 * 21 19 17 25 25 N 1.31224 * 125.97071 * 179.97438 * 12 11 9 26 26 C 1.38240 * 120.00023 * 0.25577 * 7 6 5 27 27 C 1.38234 * 119.99811 * 359.46869 * 26 7 6 28 28 H 1.09000 * 109.46832 * 310.94819 * 1 2 3 29 29 H 1.09004 * 109.46954 * 70.94466 * 1 2 3 30 30 H 1.08995 * 109.47181 * 190.93964 * 1 2 3 31 31 H 1.08003 * 119.99940 * 359.97285 * 5 4 2 32 32 H 1.08001 * 120.00164 * 179.97438 * 6 5 4 33 33 H 1.08999 * 109.46922 * 330.00118 * 8 7 6 34 34 H 1.09000 * 109.46854 * 209.99797 * 8 7 6 35 35 H 0.96999 * 119.99686 * 0.02562 * 11 9 8 36 36 H 1.07998 * 126.06328 * 0.02562 * 13 12 11 37 37 H 1.07999 * 126.06766 * 179.97438 * 14 13 12 38 38 H 1.09004 * 109.47046 * 244.98445 * 16 15 14 39 39 H 1.08995 * 109.47139 * 4.98480 * 16 15 14 40 40 H 0.97008 * 119.99677 * 179.97438 * 20 19 17 41 41 H 1.07998 * 119.99908 * 179.73290 * 26 7 6 42 42 H 1.08001 * 120.00364 * 180.29584 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 8 2.2877 1.3397 0.0000 4 6 2.2104 -0.5606 1.6227 5 6 2.3658 -1.9120 1.8684 6 6 2.6772 -2.3518 3.1414 7 6 2.8327 -1.4402 4.1688 8 6 3.1716 -1.9196 5.5568 9 6 4.6690 -1.9751 5.7174 10 8 5.3900 -1.6563 4.7956 11 7 5.2069 -2.3781 6.8856 12 6 6.5996 -2.4292 7.0351 13 6 7.5473 -2.0904 6.0559 14 6 8.7771 -2.2732 6.5880 15 7 8.6192 -2.7102 7.8551 16 6 9.6959 -3.0330 8.7947 17 6 9.5116 -2.2388 10.0620 18 1 8.6758 -1.5616 10.1583 19 6 10.4101 -2.3766 11.0988 20 7 11.4281 -3.2008 10.9814 21 14 10.1811 -1.3926 12.6701 22 1 8.9677 -0.5450 12.5510 23 1 10.0245 -2.3221 13.8177 24 1 11.3690 -0.5293 12.8909 25 7 7.2457 -2.8011 8.1149 26 6 2.6715 -0.0891 3.9244 27 6 2.3657 0.3511 2.6502 28 1 -0.3633 0.6735 0.7762 29 1 -0.3633 0.3355 -0.9714 30 1 -0.3633 -1.0089 0.1950 31 1 2.2440 -2.6243 1.0657 32 1 2.7983 -3.4076 3.3334 33 1 2.7527 -2.9141 5.7100 34 1 2.7527 -1.2316 6.2912 35 1 4.6303 -2.6327 7.6228 36 1 7.3322 -1.7444 5.0557 37 1 9.7184 -2.1002 6.0877 38 1 9.6692 -4.0978 9.0260 39 1 10.6570 -2.7827 8.3457 40 1 12.0604 -3.2975 11.7107 41 1 2.7887 0.6227 4.7281 42 1 2.2444 1.4069 2.4582 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000435446981.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:49 Heat of formation + Delta-G solvation = 9.063366 kcal Electronic energy + Delta-G solvation = -26019.277550 eV Core-core repulsion = 22091.910469 eV Total energy + Delta-G solvation = -3927.367081 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.23532 -40.94951 -39.68717 -36.87554 -36.23414 -35.27830 -34.06093 -32.73944 -31.90092 -30.97896 -29.74034 -29.21048 -28.20365 -25.11217 -23.74716 -23.64069 -22.45611 -21.64910 -20.89194 -19.06923 -18.71263 -18.34439 -17.89349 -17.59782 -17.06348 -16.94432 -16.30738 -16.16552 -15.94213 -15.77456 -15.48662 -15.23160 -14.92521 -14.57244 -14.50657 -14.33723 -14.23665 -13.83673 -13.72299 -13.61017 -13.42308 -13.15346 -12.98404 -12.89636 -12.74169 -12.53924 -12.32670 -12.06482 -12.00196 -11.62772 -11.39451 -11.27157 -10.94208 -10.73883 -10.03795 -9.87552 -9.77094 -9.31926 -9.13402 -8.34929 -6.48987 -0.09043 0.45507 0.94458 0.98582 1.35793 1.35879 1.39389 1.46605 1.51216 1.82657 2.22803 2.28807 2.40355 2.73623 2.96884 3.02601 3.54984 3.77192 3.83170 4.05028 4.07674 4.26434 4.28342 4.34820 4.46801 4.53481 4.56869 4.70918 4.77232 4.87845 4.90399 4.92329 5.01488 5.08923 5.15820 5.18841 5.28902 5.31941 5.55060 5.55732 5.78246 5.92892 6.01306 6.23754 6.30043 6.63182 7.00069 7.14703 7.21112 8.72898 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.028344 B = 0.001684 C = 0.001675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.634212 B =16622.440738 C =16716.530823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.494 4.494 2 S 1.392 4.608 3 O -0.933 6.933 4 C -0.472 4.472 5 C -0.036 4.036 6 C -0.128 4.128 7 C -0.043 4.043 8 C -0.091 4.091 9 C 0.520 3.480 10 O -0.545 6.545 11 N -0.625 5.625 12 C 0.266 3.734 13 C -0.295 4.295 14 C 0.054 3.946 15 N -0.344 5.344 16 C 0.272 3.728 17 C -0.548 4.548 18 H 0.051 0.949 19 C 0.019 3.981 20 N -0.920 5.920 21 Si 0.972 3.028 22 H -0.275 1.275 23 H -0.272 1.272 24 H -0.271 1.271 25 N -0.345 5.345 26 C -0.138 4.138 27 C -0.085 4.085 28 H 0.059 0.941 29 H 0.120 0.880 30 H 0.145 0.855 31 H 0.188 0.812 32 H 0.154 0.846 33 H 0.150 0.850 34 H 0.132 0.868 35 H 0.427 0.573 36 H 0.165 0.835 37 H 0.199 0.801 38 H 0.023 0.977 39 H 0.058 0.942 40 H 0.273 0.727 41 H 0.120 0.880 42 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.012 -2.163 -21.831 33.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.652 4.652 2 S 1.591 4.409 3 O -0.929 6.929 4 C -0.568 4.568 5 C -0.055 4.055 6 C -0.147 4.147 7 C -0.044 4.044 8 C -0.131 4.131 9 C 0.309 3.691 10 O -0.421 6.421 11 N -0.275 5.275 12 C 0.011 3.989 13 C -0.326 4.326 14 C -0.094 4.094 15 N -0.126 5.126 16 C 0.153 3.847 17 C -0.586 4.586 18 H 0.070 0.930 19 C -0.182 4.182 20 N -0.558 5.558 21 Si 0.796 3.204 22 H -0.200 1.200 23 H -0.197 1.197 24 H -0.196 1.196 25 N -0.176 5.176 26 C -0.158 4.158 27 C -0.104 4.104 28 H 0.079 0.921 29 H 0.138 0.862 30 H 0.163 0.837 31 H 0.206 0.794 32 H 0.172 0.828 33 H 0.167 0.833 34 H 0.150 0.850 35 H 0.265 0.735 36 H 0.182 0.818 37 H 0.216 0.784 38 H 0.041 0.959 39 H 0.075 0.925 40 H 0.082 0.918 41 H 0.138 0.862 42 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -23.756 -2.165 -21.857 32.354 hybrid contribution -0.489 2.273 2.516 3.426 sum -24.245 0.109 -19.340 31.014 Atomic orbital electron populations 1.27736 1.20444 1.09586 1.07435 1.68511 0.86083 0.96473 0.89822 1.92990 1.75999 1.40908 1.83018 1.27872 1.12381 1.00466 1.16067 1.21388 0.92814 0.93377 0.97914 1.21585 0.99356 1.00738 0.92973 1.19664 0.96050 0.93351 0.95309 1.20794 0.88529 1.07705 0.96042 1.21361 0.92079 0.75314 0.80373 1.90668 1.63322 1.47424 1.40640 1.42672 1.01659 1.66058 1.17088 1.19488 0.86205 1.00217 0.92976 1.21696 0.89890 1.18091 1.02915 1.23151 1.01371 0.99033 0.85869 1.48834 1.03859 1.49114 1.10771 1.19346 0.82011 0.96254 0.87073 1.21423 1.11405 1.25484 1.00288 0.93030 1.25736 0.94263 0.96287 1.01884 1.69999 1.14418 1.36994 1.34417 0.85292 0.78186 0.78417 0.78458 1.20011 1.19697 1.19584 1.77248 0.89004 1.29653 1.21725 1.21204 1.01257 0.96080 0.97227 1.21050 0.96871 0.98915 0.93589 0.92148 0.86162 0.83703 0.79441 0.82799 0.83258 0.85003 0.73529 0.81809 0.78439 0.95898 0.92455 0.91813 0.86152 0.88095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.49 -3.44 10.70 113.37 1.21 -2.23 16 2 S 1.39 15.61 14.19 -56.49 -0.80 14.81 16 3 O -0.93 -25.69 16.90 -148.98 -2.52 -28.21 16 4 C -0.47 -7.63 5.61 22.27 0.12 -7.51 16 5 C -0.04 -0.38 9.75 22.27 0.22 -0.17 16 6 C -0.13 -1.73 9.70 22.27 0.22 -1.52 16 7 C -0.04 -0.76 4.37 -19.86 -0.09 -0.85 16 8 C -0.09 -1.26 5.83 29.10 0.17 -1.09 16 9 C 0.52 12.93 7.79 87.66 0.68 13.62 16 10 O -0.55 -18.10 13.16 -3.07 -0.04 -18.14 16 11 N -0.62 -17.32 5.45 -307.51 -1.68 -19.00 16 12 C 0.27 10.40 8.11 133.32 1.08 11.48 16 13 C -0.29 -11.60 9.61 22.11 0.21 -11.39 16 14 C 0.05 2.17 11.44 83.52 0.96 3.13 16 15 N -0.34 -16.22 3.67 -351.85 -1.29 -17.51 16 16 C 0.27 14.16 6.26 85.63 0.54 14.70 16 17 C -0.55 -31.04 9.24 25.60 0.24 -30.81 16 18 H 0.05 3.05 7.81 -2.91 -0.02 3.02 16 19 C 0.02 1.04 5.46 84.66 0.46 1.50 16 20 N -0.92 -52.06 13.29 21.45 0.28 -51.78 16 21 Si 0.97 43.70 29.54 68.60 2.03 45.72 16 22 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 23 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 24 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 25 N -0.35 -15.93 12.42 -54.45 -0.68 -16.60 16 26 C -0.14 -3.01 9.70 22.27 0.22 -2.79 16 27 C -0.09 -1.97 9.44 22.27 0.21 -1.76 16 28 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.12 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.14 0.06 8.14 -2.39 -0.02 0.04 16 31 H 0.19 -0.08 8.06 -2.91 -0.02 -0.10 16 32 H 0.15 1.27 8.06 -2.91 -0.02 1.24 16 33 H 0.15 0.94 8.09 -2.39 -0.02 0.92 16 34 H 0.13 1.26 8.08 -2.39 -0.02 1.24 16 35 H 0.43 8.92 8.82 -92.71 -0.82 8.10 16 36 H 0.16 6.31 5.92 -2.91 -0.02 6.29 16 37 H 0.20 6.33 8.06 -2.91 -0.02 6.31 16 38 H 0.02 1.28 8.14 -2.38 -0.02 1.26 16 39 H 0.06 2.93 8.07 -2.39 -0.02 2.91 16 40 H 0.27 14.39 8.31 -92.70 -0.77 13.62 16 41 H 0.12 2.48 8.06 -2.91 -0.02 2.46 16 42 H 0.10 2.71 7.45 -2.91 -0.02 2.69 16 Total: -1.00 -90.85 380.30 2.00 -88.86 By element: Atomic # 1 Polarization: 17.29 SS G_CDS: 0.24 Total: 17.53 kcal Atomic # 6 Polarization: -22.14 SS G_CDS: 6.45 Total: -15.69 kcal Atomic # 7 Polarization: -101.53 SS G_CDS: -3.36 Total: -104.89 kcal Atomic # 8 Polarization: -43.78 SS G_CDS: -2.56 Total: -46.34 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.72 kcal Atomic # 16 Polarization: 15.61 SS G_CDS: -0.80 Total: 14.81 kcal Total: -90.85 2.00 -88.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000435446981.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.920 kcal (2) G-P(sol) polarization free energy of solvation -90.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.857 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds