Wall clock time and date at job start Wed Apr 1 2020 04:29:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42894 * 114.00106 * 2 1 4 4 C 1.52997 * 109.47009 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47363 * 64.99714 * 4 3 2 6 6 C 1.36902 * 119.99960 * 279.24953 * 5 4 3 7 7 H 1.08000 * 119.99919 * 36.79179 * 6 5 4 8 8 C 1.39026 * 120.00043 * 216.79160 * 6 5 4 9 9 N 1.31386 * 120.00014 * 25.79963 * 8 6 5 10 10 Si 1.86799 * 119.99948 * 205.80631 * 8 6 5 11 11 H 1.48503 * 109.47437 * 64.99673 * 10 8 6 12 12 H 1.48500 * 109.47009 * 184.99626 * 10 8 6 13 13 H 1.48499 * 109.47134 * 304.99526 * 10 8 6 14 14 C 1.34779 * 120.00128 * 99.25472 * 5 4 3 15 15 O 1.21619 * 119.99871 * 186.87104 * 14 5 4 16 16 C 1.47493 * 119.99874 * 6.86181 * 14 5 4 17 17 C 1.39801 * 120.09329 * 151.31748 * 16 14 5 18 18 C 1.37687 * 119.90673 * 180.02562 * 17 16 14 19 19 C 1.39016 * 120.09097 * 0.02562 * 18 17 16 20 20 O 1.35718 * 119.90240 * 179.97438 * 19 18 17 21 21 C 1.42900 * 116.99619 * 179.97438 * 20 19 18 22 22 C 1.53008 * 109.46849 * 180.02562 * 21 20 19 23 23 F 1.39904 * 109.46556 * 60.00443 * 22 21 20 24 24 F 1.39895 * 109.46977 * 180.02562 * 22 21 20 25 25 F 1.39894 * 109.47249 * 300.00789 * 22 21 20 26 26 C 1.39004 * 120.19021 * 0.23458 * 19 18 17 27 27 C 1.37689 * 120.09613 * 359.48263 * 26 19 18 28 28 H 1.08994 * 109.47388 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46783 * 300.00224 * 1 2 3 30 30 H 1.08996 * 109.46890 * 59.99587 * 1 2 3 31 31 H 1.08995 * 109.47282 * 59.99941 * 3 2 1 32 32 H 1.09000 * 109.47142 * 299.99799 * 3 2 1 33 33 H 1.09007 * 109.47015 * 304.99455 * 4 3 2 34 34 H 1.08996 * 109.47428 * 185.00171 * 4 3 2 35 35 H 0.96998 * 120.00048 * 184.98802 * 9 8 6 36 36 H 1.08002 * 120.04404 * 359.97438 * 17 16 14 37 37 H 1.07988 * 119.95295 * 179.97438 * 18 17 16 38 38 H 1.08989 * 109.47834 * 300.00471 * 21 20 19 39 39 H 1.09005 * 109.46716 * 60.01441 * 21 20 19 40 40 H 1.08002 * 119.95486 * 179.72491 * 26 19 18 41 41 H 1.08001 * 120.04891 * 180.23040 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9757 0.5642 -1.2527 6 6 3.9166 -0.7955 -1.4008 7 1 3.0953 -1.3502 -0.9716 8 6 4.9138 -1.4622 -2.1035 9 7 6.1177 -0.9429 -2.1874 10 14 4.5418 -3.0963 -2.9286 11 1 3.5476 -2.8889 -4.0121 12 1 5.7913 -3.6560 -3.5039 13 1 3.9910 -4.0431 -1.9259 14 6 4.4390 1.3321 -2.2588 15 8 4.6865 0.8334 -3.3400 16 6 4.6457 2.7773 -2.0484 17 6 5.6241 3.4590 -2.7782 18 6 5.8141 4.8080 -2.5784 19 6 5.0351 5.4919 -1.6522 20 8 5.2260 6.8215 -1.4580 21 6 4.3908 7.4624 -0.4917 22 6 4.7496 8.9477 -0.4126 23 9 4.5551 9.5416 -1.6643 24 9 3.9323 9.5750 0.5338 25 9 6.0896 9.0843 -0.0347 26 6 4.0649 4.8169 -0.9206 27 6 3.8643 3.4691 -1.1183 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.6887 1.8463 0.8899 32 1 1.6887 1.8463 -0.8900 33 1 3.8515 0.5681 0.8410 34 1 3.9786 2.1763 0.0889 35 1 6.7931 -1.3704 -2.7369 36 1 6.2305 2.9280 -3.4971 37 1 6.5699 5.3352 -3.1414 38 1 3.3468 7.3564 -0.7863 39 1 4.5421 6.9994 0.4834 40 1 3.4649 5.3511 -0.1988 41 1 3.1077 2.9462 -0.5521 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457182603.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:42 Heat of formation + Delta-G solvation = -189.323199 kcal Electronic energy + Delta-G solvation = -30855.516784 eV Core-core repulsion = 25902.644653 eV Total energy + Delta-G solvation = -4952.872130 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.118 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -50.46768 -48.02930 -47.90918 -40.39125 -39.04843 -37.35578 -36.60803 -34.39441 -32.40960 -31.15640 -30.57489 -29.23144 -28.98650 -26.06894 -24.94697 -24.13418 -22.95169 -22.20439 -21.84870 -19.68472 -19.20753 -18.99522 -18.03105 -17.90518 -17.10173 -16.41812 -16.14863 -16.10724 -15.45685 -15.25452 -14.86632 -14.77950 -14.73508 -14.42496 -14.37545 -14.17127 -14.08669 -14.08398 -14.00729 -13.59808 -13.38759 -13.08508 -12.89414 -12.64783 -12.31179 -12.01802 -11.66240 -11.54661 -11.35467 -11.20120 -11.12244 -10.89780 -10.69362 -10.42977 -10.30738 -10.05548 -9.27834 -8.77819 -8.74975 -8.22885 -7.94214 -7.17922 -6.14345 -3.73947 1.37694 1.52647 1.95164 2.78758 3.35025 3.37265 3.44108 3.49087 3.56207 3.70991 4.01332 4.16806 4.29420 4.49093 4.55166 4.63878 4.87554 4.89947 4.92468 5.27387 5.40939 5.43668 5.49033 5.56741 5.58984 5.65552 5.74835 5.82058 5.87854 5.94721 5.97179 6.18570 6.28997 6.51709 6.54490 6.79870 6.86640 7.26371 7.57939 7.75427 8.28164 9.01879 9.20389 9.65397 10.25405 10.94014 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.016065 B = 0.002762 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.486233 B =10135.155448 C =11439.154190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.362 6.362 3 C 0.045 3.955 4 C 0.065 3.935 5 N -0.428 5.428 6 C -0.331 4.331 7 H 0.096 0.904 8 C 0.070 3.930 9 N -0.825 5.825 10 Si 0.908 3.092 11 H -0.275 1.275 12 H -0.289 1.289 13 H -0.277 1.277 14 C 0.498 3.502 15 O -0.541 6.541 16 C -0.116 4.116 17 C -0.034 4.034 18 C -0.146 4.146 19 C 0.114 3.886 20 O -0.303 6.303 21 C 0.015 3.985 22 C 0.465 3.535 23 F -0.174 7.174 24 F -0.174 7.174 25 F -0.174 7.174 26 C -0.213 4.213 27 C -0.102 4.102 28 H 0.081 0.919 29 H 0.032 0.968 30 H 0.036 0.964 31 H 0.045 0.955 32 H 0.047 0.953 33 H 0.075 0.925 34 H 0.106 0.894 35 H 0.266 0.734 36 H 0.140 0.860 37 H 0.132 0.868 38 H 0.108 0.892 39 H 0.109 0.891 40 H 0.125 0.875 41 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.209 16.816 7.076 19.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.280 6.280 3 C -0.033 4.033 4 C -0.059 4.059 5 N -0.147 5.147 6 C -0.457 4.457 7 H 0.114 0.886 8 C -0.140 4.140 9 N -0.459 5.459 10 Si 0.734 3.266 11 H -0.201 1.201 12 H -0.215 1.215 13 H -0.203 1.203 14 C 0.287 3.713 15 O -0.421 6.421 16 C -0.120 4.120 17 C -0.053 4.053 18 C -0.165 4.165 19 C 0.070 3.930 20 O -0.217 6.217 21 C -0.063 4.063 22 C 0.410 3.590 23 F -0.155 7.155 24 F -0.155 7.155 25 F -0.155 7.155 26 C -0.232 4.232 27 C -0.120 4.120 28 H 0.100 0.900 29 H 0.050 0.950 30 H 0.054 0.946 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.093 0.907 34 H 0.123 0.877 35 H 0.076 0.924 36 H 0.158 0.842 37 H 0.150 0.850 38 H 0.126 0.874 39 H 0.127 0.873 40 H 0.143 0.857 41 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -5.610 16.453 6.428 18.534 hybrid contribution -0.432 -0.197 -0.131 0.492 sum -6.042 16.256 6.296 18.450 Atomic orbital electron populations 1.22695 0.82711 1.02285 0.99029 1.88135 1.18051 1.26797 1.95036 1.23109 0.95789 0.85505 0.98942 1.22556 0.91456 1.00495 0.91396 1.43168 1.56512 1.06127 1.08918 1.19262 1.07123 0.80519 1.38794 0.88624 1.25129 0.93221 0.98310 0.97350 1.69924 1.01595 1.41145 1.33284 0.86344 0.77745 0.82366 0.80114 1.20113 1.21451 1.20269 1.17583 0.84739 0.83880 0.85073 1.90602 1.53296 1.73418 1.24780 1.20570 0.97488 0.96540 0.97357 1.21118 0.95334 0.92066 0.96821 1.20323 1.01848 0.94041 1.00262 1.18987 0.96464 0.80649 0.96883 1.85958 1.57543 1.21253 1.56932 1.23745 0.97825 0.88002 0.96720 1.20052 0.75004 0.89874 0.74031 1.93236 1.94719 1.86024 1.41561 1.93221 1.72873 1.84142 1.65285 1.93236 1.34488 1.96640 1.91137 1.21070 1.01861 0.95987 1.04235 1.22174 1.00090 0.93171 0.96568 0.90046 0.94965 0.94577 0.93683 0.93446 0.90676 0.87728 0.92430 0.84209 0.85035 0.87379 0.87316 0.85697 0.82641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 101.05 1.11 1.51 16 2 O -0.36 -6.56 8.97 -35.23 -0.32 -6.88 16 3 C 0.04 0.71 5.08 37.16 0.19 0.90 16 4 C 0.06 1.22 5.32 -4.04 -0.02 1.20 16 5 N -0.43 -10.53 2.57 -116.01 -0.30 -10.83 16 6 C -0.33 -9.08 8.83 -15.00 -0.13 -9.21 16 7 H 0.10 2.59 6.69 -52.49 -0.35 2.24 16 8 C 0.07 1.99 4.13 -17.45 -0.07 1.92 16 9 N -0.83 -24.32 11.85 55.50 0.66 -23.66 16 10 Si 0.91 22.25 29.63 -169.99 -5.04 17.21 16 11 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 13 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 14 C 0.50 12.61 6.65 -12.49 -0.08 12.53 16 15 O -0.54 -15.95 14.42 5.26 0.08 -15.87 16 16 C -0.12 -2.31 5.63 -104.96 -0.59 -2.91 16 17 C -0.03 -0.63 9.59 -39.20 -0.38 -1.00 16 18 C -0.15 -2.21 9.97 -39.49 -0.39 -2.61 16 19 C 0.11 1.57 6.70 -39.01 -0.26 1.30 16 20 O -0.30 -3.63 10.01 -18.86 -0.19 -3.82 16 21 C 0.01 0.12 4.69 37.16 0.17 0.29 16 22 C 0.46 4.13 3.32 37.16 0.12 4.25 16 23 F -0.17 -1.79 17.26 2.25 0.04 -1.76 16 24 F -0.17 -1.43 17.32 2.25 0.04 -1.39 16 25 F -0.17 -1.80 17.26 2.25 0.04 -1.76 16 26 C -0.21 -2.72 9.01 -39.50 -0.36 -3.08 16 27 C -0.10 -1.60 7.52 -39.20 -0.29 -1.89 16 28 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.05 0.76 7.41 -51.93 -0.38 0.37 16 33 H 0.07 1.44 8.11 -51.93 -0.42 1.02 16 34 H 0.11 1.73 3.83 -55.28 -0.21 1.51 16 35 H 0.27 7.56 8.32 -40.82 -0.34 7.22 16 36 H 0.14 2.70 7.90 -52.49 -0.41 2.28 16 37 H 0.13 1.73 8.06 -52.49 -0.42 1.31 16 38 H 0.11 0.67 7.66 -51.94 -0.40 0.27 16 39 H 0.11 0.67 7.64 -51.93 -0.40 0.28 16 40 H 0.13 1.11 6.28 -52.49 -0.33 0.78 16 41 H 0.16 2.24 2.69 -52.49 -0.14 2.10 16 LS Contribution 355.20 15.07 5.35 5.35 Total: -1.00 -34.43 355.20 -4.92 -39.34 By element: Atomic # 1 Polarization: 5.16 SS G_CDS: -4.30 Total: 0.86 kcal Atomic # 6 Polarization: 4.19 SS G_CDS: -0.98 Total: 3.21 kcal Atomic # 7 Polarization: -34.85 SS G_CDS: 0.36 Total: -34.49 kcal Atomic # 8 Polarization: -26.15 SS G_CDS: -0.43 Total: -26.57 kcal Atomic # 9 Polarization: -5.03 SS G_CDS: 0.12 Total: -4.91 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.04 Total: 17.21 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -34.43 -4.92 -39.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457182603.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -149.981 kcal (2) G-P(sol) polarization free energy of solvation -34.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds