Wall clock time and date at job start Wed Apr 1 2020 04:29:42
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42906 * 1
3 3 C 1.42894 * 114.00106 * 2 1
4 4 C 1.52997 * 109.47009 * 180.02562 * 3 2 1
5 5 N 1.46498 * 109.47363 * 64.99714 * 4 3 2
6 6 C 1.36902 * 119.99960 * 279.24953 * 5 4 3
7 7 H 1.08000 * 119.99919 * 36.79179 * 6 5 4
8 8 C 1.39026 * 120.00043 * 216.79160 * 6 5 4
9 9 N 1.31386 * 120.00014 * 25.79963 * 8 6 5
10 10 Si 1.86799 * 119.99948 * 205.80631 * 8 6 5
11 11 H 1.48503 * 109.47437 * 64.99673 * 10 8 6
12 12 H 1.48500 * 109.47009 * 184.99626 * 10 8 6
13 13 H 1.48499 * 109.47134 * 304.99526 * 10 8 6
14 14 C 1.34779 * 120.00128 * 99.25472 * 5 4 3
15 15 O 1.21619 * 119.99871 * 186.87104 * 14 5 4
16 16 C 1.47493 * 119.99874 * 6.86181 * 14 5 4
17 17 C 1.39801 * 120.09329 * 151.31748 * 16 14 5
18 18 C 1.37687 * 119.90673 * 180.02562 * 17 16 14
19 19 C 1.39016 * 120.09097 * 0.02562 * 18 17 16
20 20 O 1.35718 * 119.90240 * 179.97438 * 19 18 17
21 21 C 1.42900 * 116.99619 * 179.97438 * 20 19 18
22 22 C 1.53008 * 109.46849 * 180.02562 * 21 20 19
23 23 F 1.39904 * 109.46556 * 60.00443 * 22 21 20
24 24 F 1.39895 * 109.46977 * 180.02562 * 22 21 20
25 25 F 1.39894 * 109.47249 * 300.00789 * 22 21 20
26 26 C 1.39004 * 120.19021 * 0.23458 * 19 18 17
27 27 C 1.37689 * 120.09613 * 359.48263 * 26 19 18
28 28 H 1.08994 * 109.47388 * 180.02562 * 1 2 3
29 29 H 1.09003 * 109.46783 * 300.00224 * 1 2 3
30 30 H 1.08996 * 109.46890 * 59.99587 * 1 2 3
31 31 H 1.08995 * 109.47282 * 59.99941 * 3 2 1
32 32 H 1.09000 * 109.47142 * 299.99799 * 3 2 1
33 33 H 1.09007 * 109.47015 * 304.99455 * 4 3 2
34 34 H 1.08996 * 109.47428 * 185.00171 * 4 3 2
35 35 H 0.96998 * 120.00048 * 184.98802 * 9 8 6
36 36 H 1.08002 * 120.04404 * 359.97438 * 17 16 14
37 37 H 1.07988 * 119.95295 * 179.97438 * 18 17 16
38 38 H 1.08989 * 109.47834 * 300.00471 * 21 20 19
39 39 H 1.09005 * 109.46716 * 60.01441 * 21 20 19
40 40 H 1.08002 * 119.95486 * 179.72491 * 26 19 18
41 41 H 1.08001 * 120.04891 * 180.23040 * 27 26 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4291 0.0000 0.0000
3 6 2.0103 1.3054 0.0000
4 6 3.5355 1.1845 -0.0006
5 7 3.9757 0.5642 -1.2527
6 6 3.9166 -0.7955 -1.4008
7 1 3.0953 -1.3502 -0.9716
8 6 4.9138 -1.4622 -2.1035
9 7 6.1177 -0.9429 -2.1874
10 14 4.5418 -3.0963 -2.9286
11 1 3.5476 -2.8889 -4.0121
12 1 5.7913 -3.6560 -3.5039
13 1 3.9910 -4.0431 -1.9259
14 6 4.4390 1.3321 -2.2588
15 8 4.6865 0.8334 -3.3400
16 6 4.6457 2.7773 -2.0484
17 6 5.6241 3.4590 -2.7782
18 6 5.8141 4.8080 -2.5784
19 6 5.0351 5.4919 -1.6522
20 8 5.2260 6.8215 -1.4580
21 6 4.3908 7.4624 -0.4917
22 6 4.7496 8.9477 -0.4126
23 9 4.5551 9.5416 -1.6643
24 9 3.9323 9.5750 0.5338
25 9 6.0896 9.0843 -0.0347
26 6 4.0649 4.8169 -0.9206
27 6 3.8643 3.4691 -1.1183
28 1 -0.3634 -1.0276 0.0005
29 1 -0.3633 0.5139 0.8900
30 1 -0.3633 0.5139 -0.8899
31 1 1.6887 1.8463 0.8899
32 1 1.6887 1.8463 -0.8900
33 1 3.8515 0.5681 0.8410
34 1 3.9786 2.1763 0.0889
35 1 6.7931 -1.3704 -2.7369
36 1 6.2305 2.9280 -3.4971
37 1 6.5699 5.3352 -3.1414
38 1 3.3468 7.3564 -0.7863
39 1 4.5421 6.9994 0.4834
40 1 3.4649 5.3511 -0.1988
41 1 3.1077 2.9462 -0.5521
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000457182603.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:29:42
Heat of formation + Delta-G solvation = -189.323199 kcal
Electronic energy + Delta-G solvation = -30855.516784 eV
Core-core repulsion = 25902.644653 eV
Total energy + Delta-G solvation = -4952.872130 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 347.118 amu
Computer time = 0.72 seconds
Orbital eigenvalues (eV)
-50.46768 -48.02930 -47.90918 -40.39125 -39.04843 -37.35578 -36.60803 -34.39441
-32.40960 -31.15640 -30.57489 -29.23144 -28.98650 -26.06894 -24.94697 -24.13418
-22.95169 -22.20439 -21.84870 -19.68472 -19.20753 -18.99522 -18.03105 -17.90518
-17.10173 -16.41812 -16.14863 -16.10724 -15.45685 -15.25452 -14.86632 -14.77950
-14.73508 -14.42496 -14.37545 -14.17127 -14.08669 -14.08398 -14.00729 -13.59808
-13.38759 -13.08508 -12.89414 -12.64783 -12.31179 -12.01802 -11.66240 -11.54661
-11.35467 -11.20120 -11.12244 -10.89780 -10.69362 -10.42977 -10.30738 -10.05548
-9.27834 -8.77819 -8.74975 -8.22885 -7.94214 -7.17922 -6.14345 -3.73947
1.37694 1.52647 1.95164 2.78758 3.35025 3.37265 3.44108 3.49087
3.56207 3.70991 4.01332 4.16806 4.29420 4.49093 4.55166 4.63878
4.87554 4.89947 4.92468 5.27387 5.40939 5.43668 5.49033 5.56741
5.58984 5.65552 5.74835 5.82058 5.87854 5.94721 5.97179 6.18570
6.28997 6.51709 6.54490 6.79870 6.86640 7.26371 7.57939 7.75427
8.28164 9.01879 9.20389 9.65397 10.25405 10.94014
Molecular weight = 347.12amu
Principal moments of inertia in cm(-1)
A = 0.016065 B = 0.002762 C = 0.002447
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1742.486233 B =10135.155448 C =11439.154190
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.030 3.970
2 O -0.362 6.362
3 C 0.045 3.955
4 C 0.065 3.935
5 N -0.428 5.428
6 C -0.331 4.331
7 H 0.096 0.904
8 C 0.070 3.930
9 N -0.825 5.825
10 Si 0.908 3.092
11 H -0.275 1.275
12 H -0.289 1.289
13 H -0.277 1.277
14 C 0.498 3.502
15 O -0.541 6.541
16 C -0.116 4.116
17 C -0.034 4.034
18 C -0.146 4.146
19 C 0.114 3.886
20 O -0.303 6.303
21 C 0.015 3.985
22 C 0.465 3.535
23 F -0.174 7.174
24 F -0.174 7.174
25 F -0.174 7.174
26 C -0.213 4.213
27 C -0.102 4.102
28 H 0.081 0.919
29 H 0.032 0.968
30 H 0.036 0.964
31 H 0.045 0.955
32 H 0.047 0.953
33 H 0.075 0.925
34 H 0.106 0.894
35 H 0.266 0.734
36 H 0.140 0.860
37 H 0.132 0.868
38 H 0.108 0.892
39 H 0.109 0.891
40 H 0.125 0.875
41 H 0.157 0.843
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.209 16.816 7.076 19.272
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.067 4.067
2 O -0.280 6.280
3 C -0.033 4.033
4 C -0.059 4.059
5 N -0.147 5.147
6 C -0.457 4.457
7 H 0.114 0.886
8 C -0.140 4.140
9 N -0.459 5.459
10 Si 0.734 3.266
11 H -0.201 1.201
12 H -0.215 1.215
13 H -0.203 1.203
14 C 0.287 3.713
15 O -0.421 6.421
16 C -0.120 4.120
17 C -0.053 4.053
18 C -0.165 4.165
19 C 0.070 3.930
20 O -0.217 6.217
21 C -0.063 4.063
22 C 0.410 3.590
23 F -0.155 7.155
24 F -0.155 7.155
25 F -0.155 7.155
26 C -0.232 4.232
27 C -0.120 4.120
28 H 0.100 0.900
29 H 0.050 0.950
30 H 0.054 0.946
31 H 0.063 0.937
32 H 0.066 0.934
33 H 0.093 0.907
34 H 0.123 0.877
35 H 0.076 0.924
36 H 0.158 0.842
37 H 0.150 0.850
38 H 0.126 0.874
39 H 0.127 0.873
40 H 0.143 0.857
41 H 0.174 0.826
Dipole moment (debyes) X Y Z Total
from point charges -5.610 16.453 6.428 18.534
hybrid contribution -0.432 -0.197 -0.131 0.492
sum -6.042 16.256 6.296 18.450
Atomic orbital electron populations
1.22695 0.82711 1.02285 0.99029 1.88135 1.18051 1.26797 1.95036
1.23109 0.95789 0.85505 0.98942 1.22556 0.91456 1.00495 0.91396
1.43168 1.56512 1.06127 1.08918 1.19262 1.07123 0.80519 1.38794
0.88624 1.25129 0.93221 0.98310 0.97350 1.69924 1.01595 1.41145
1.33284 0.86344 0.77745 0.82366 0.80114 1.20113 1.21451 1.20269
1.17583 0.84739 0.83880 0.85073 1.90602 1.53296 1.73418 1.24780
1.20570 0.97488 0.96540 0.97357 1.21118 0.95334 0.92066 0.96821
1.20323 1.01848 0.94041 1.00262 1.18987 0.96464 0.80649 0.96883
1.85958 1.57543 1.21253 1.56932 1.23745 0.97825 0.88002 0.96720
1.20052 0.75004 0.89874 0.74031 1.93236 1.94719 1.86024 1.41561
1.93221 1.72873 1.84142 1.65285 1.93236 1.34488 1.96640 1.91137
1.21070 1.01861 0.95987 1.04235 1.22174 1.00090 0.93171 0.96568
0.90046 0.94965 0.94577 0.93683 0.93446 0.90676 0.87728 0.92430
0.84209 0.85035 0.87379 0.87316 0.85697 0.82641
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.40 11.01 101.05 1.11 1.51 16
2 O -0.36 -6.56 8.97 -35.23 -0.32 -6.88 16
3 C 0.04 0.71 5.08 37.16 0.19 0.90 16
4 C 0.06 1.22 5.32 -4.04 -0.02 1.20 16
5 N -0.43 -10.53 2.57 -116.01 -0.30 -10.83 16
6 C -0.33 -9.08 8.83 -15.00 -0.13 -9.21 16
7 H 0.10 2.59 6.69 -52.49 -0.35 2.24 16
8 C 0.07 1.99 4.13 -17.45 -0.07 1.92 16
9 N -0.83 -24.32 11.85 55.50 0.66 -23.66 16
10 Si 0.91 22.25 29.63 -169.99 -5.04 17.21 16
11 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16
12 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16
13 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16
14 C 0.50 12.61 6.65 -12.49 -0.08 12.53 16
15 O -0.54 -15.95 14.42 5.26 0.08 -15.87 16
16 C -0.12 -2.31 5.63 -104.96 -0.59 -2.91 16
17 C -0.03 -0.63 9.59 -39.20 -0.38 -1.00 16
18 C -0.15 -2.21 9.97 -39.49 -0.39 -2.61 16
19 C 0.11 1.57 6.70 -39.01 -0.26 1.30 16
20 O -0.30 -3.63 10.01 -18.86 -0.19 -3.82 16
21 C 0.01 0.12 4.69 37.16 0.17 0.29 16
22 C 0.46 4.13 3.32 37.16 0.12 4.25 16
23 F -0.17 -1.79 17.26 2.25 0.04 -1.76 16
24 F -0.17 -1.43 17.32 2.25 0.04 -1.39 16
25 F -0.17 -1.80 17.26 2.25 0.04 -1.76 16
26 C -0.21 -2.72 9.01 -39.50 -0.36 -3.08 16
27 C -0.10 -1.60 7.52 -39.20 -0.29 -1.89 16
28 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16
29 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16
30 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16
31 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16
32 H 0.05 0.76 7.41 -51.93 -0.38 0.37 16
33 H 0.07 1.44 8.11 -51.93 -0.42 1.02 16
34 H 0.11 1.73 3.83 -55.28 -0.21 1.51 16
35 H 0.27 7.56 8.32 -40.82 -0.34 7.22 16
36 H 0.14 2.70 7.90 -52.49 -0.41 2.28 16
37 H 0.13 1.73 8.06 -52.49 -0.42 1.31 16
38 H 0.11 0.67 7.66 -51.94 -0.40 0.27 16
39 H 0.11 0.67 7.64 -51.93 -0.40 0.28 16
40 H 0.13 1.11 6.28 -52.49 -0.33 0.78 16
41 H 0.16 2.24 2.69 -52.49 -0.14 2.10 16
LS Contribution 355.20 15.07 5.35 5.35
Total: -1.00 -34.43 355.20 -4.92 -39.34
By element:
Atomic # 1 Polarization: 5.16 SS G_CDS: -4.30 Total: 0.86 kcal
Atomic # 6 Polarization: 4.19 SS G_CDS: -0.98 Total: 3.21 kcal
Atomic # 7 Polarization: -34.85 SS G_CDS: 0.36 Total: -34.49 kcal
Atomic # 8 Polarization: -26.15 SS G_CDS: -0.43 Total: -26.57 kcal
Atomic # 9 Polarization: -5.03 SS G_CDS: 0.12 Total: -4.91 kcal
Atomic # 14 Polarization: 22.25 SS G_CDS: -5.04 Total: 17.21 kcal
Total LS contribution 5.35 Total: 5.35 kcal
Total: -34.43 -4.92 -39.34 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000457182603.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -149.981 kcal
(2) G-P(sol) polarization free energy of solvation -34.427 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.408 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.915 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.343 kcal
(6) G-S(sol) free energy of system = (1) + (5) -189.323 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.72 seconds