Wall clock time and date at job start Wed Apr 1 2020 04:29:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42894 * 114.00106 * 2 1 4 4 C 1.52997 * 109.47009 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47363 * 64.99714 * 4 3 2 6 6 C 1.36902 * 119.99960 * 279.24953 * 5 4 3 7 7 H 1.08000 * 119.99919 * 36.79179 * 6 5 4 8 8 C 1.39026 * 120.00043 * 216.79160 * 6 5 4 9 9 N 1.31386 * 120.00014 * 25.79963 * 8 6 5 10 10 Si 1.86799 * 119.99948 * 205.80631 * 8 6 5 11 11 H 1.48503 * 109.47437 * 64.99673 * 10 8 6 12 12 H 1.48500 * 109.47009 * 184.99626 * 10 8 6 13 13 H 1.48499 * 109.47134 * 304.99526 * 10 8 6 14 14 C 1.34779 * 120.00128 * 99.25472 * 5 4 3 15 15 O 1.21619 * 119.99871 * 186.87104 * 14 5 4 16 16 C 1.47493 * 119.99874 * 6.86181 * 14 5 4 17 17 C 1.39801 * 120.09329 * 151.31748 * 16 14 5 18 18 C 1.37687 * 119.90673 * 180.02562 * 17 16 14 19 19 C 1.39016 * 120.09097 * 0.02562 * 18 17 16 20 20 O 1.35718 * 119.90240 * 179.97438 * 19 18 17 21 21 C 1.42900 * 116.99619 * 179.97438 * 20 19 18 22 22 C 1.53008 * 109.46849 * 180.02562 * 21 20 19 23 23 F 1.39904 * 109.46556 * 60.00443 * 22 21 20 24 24 F 1.39895 * 109.46977 * 180.02562 * 22 21 20 25 25 F 1.39894 * 109.47249 * 300.00789 * 22 21 20 26 26 C 1.39004 * 120.19021 * 0.23458 * 19 18 17 27 27 C 1.37689 * 120.09613 * 359.48263 * 26 19 18 28 28 H 1.08994 * 109.47388 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46783 * 300.00224 * 1 2 3 30 30 H 1.08996 * 109.46890 * 59.99587 * 1 2 3 31 31 H 1.08995 * 109.47282 * 59.99941 * 3 2 1 32 32 H 1.09000 * 109.47142 * 299.99799 * 3 2 1 33 33 H 1.09007 * 109.47015 * 304.99455 * 4 3 2 34 34 H 1.08996 * 109.47428 * 185.00171 * 4 3 2 35 35 H 0.96998 * 120.00048 * 184.98802 * 9 8 6 36 36 H 1.08002 * 120.04404 * 359.97438 * 17 16 14 37 37 H 1.07988 * 119.95295 * 179.97438 * 18 17 16 38 38 H 1.08989 * 109.47834 * 300.00471 * 21 20 19 39 39 H 1.09005 * 109.46716 * 60.01441 * 21 20 19 40 40 H 1.08002 * 119.95486 * 179.72491 * 26 19 18 41 41 H 1.08001 * 120.04891 * 180.23040 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9757 0.5642 -1.2527 6 6 3.9166 -0.7955 -1.4008 7 1 3.0953 -1.3502 -0.9716 8 6 4.9138 -1.4622 -2.1035 9 7 6.1177 -0.9429 -2.1874 10 14 4.5418 -3.0963 -2.9286 11 1 3.5476 -2.8889 -4.0121 12 1 5.7913 -3.6560 -3.5039 13 1 3.9910 -4.0431 -1.9259 14 6 4.4390 1.3321 -2.2588 15 8 4.6865 0.8334 -3.3400 16 6 4.6457 2.7773 -2.0484 17 6 5.6241 3.4590 -2.7782 18 6 5.8141 4.8080 -2.5784 19 6 5.0351 5.4919 -1.6522 20 8 5.2260 6.8215 -1.4580 21 6 4.3908 7.4624 -0.4917 22 6 4.7496 8.9477 -0.4126 23 9 4.5551 9.5416 -1.6643 24 9 3.9323 9.5750 0.5338 25 9 6.0896 9.0843 -0.0347 26 6 4.0649 4.8169 -0.9206 27 6 3.8643 3.4691 -1.1183 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.6887 1.8463 0.8899 32 1 1.6887 1.8463 -0.8900 33 1 3.8515 0.5681 0.8410 34 1 3.9786 2.1763 0.0889 35 1 6.7931 -1.3704 -2.7369 36 1 6.2305 2.9280 -3.4971 37 1 6.5699 5.3352 -3.1414 38 1 3.3468 7.3564 -0.7863 39 1 4.5421 6.9994 0.4834 40 1 3.4649 5.3511 -0.1988 41 1 3.1077 2.9462 -0.5521 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457182603.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:42 Heat of formation + Delta-G solvation = -212.573348 kcal Electronic energy + Delta-G solvation = -30856.524986 eV Core-core repulsion = 25902.644653 eV Total energy + Delta-G solvation = -4953.880333 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.118 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -51.15385 -48.69665 -48.64035 -41.61060 -40.45734 -38.62507 -38.04214 -36.17168 -34.24891 -32.37332 -31.70309 -30.58940 -30.26064 -27.28834 -26.66604 -25.05014 -24.31461 -23.43325 -23.15623 -21.30241 -20.03757 -19.68606 -18.97369 -18.83266 -18.69227 -17.99725 -17.44748 -16.91240 -16.83114 -16.47979 -16.41752 -15.88092 -15.73578 -15.54502 -15.46497 -15.43888 -15.16364 -15.07261 -14.80286 -14.78835 -14.62591 -14.39636 -14.27693 -13.77803 -13.54760 -13.45100 -13.02602 -12.85086 -12.78540 -12.68160 -12.55012 -12.52681 -12.21248 -12.12935 -11.90758 -11.47457 -10.78566 -10.43513 -10.14231 -9.99249 -9.23540 -9.16095 -8.22755 -5.85379 0.08168 0.31801 1.20683 1.37636 1.46717 1.50342 2.02036 2.23956 2.40111 2.69559 2.87811 2.95004 3.00104 3.21666 3.31244 3.35354 3.70511 3.88895 3.97960 4.00687 4.04797 4.25486 4.29985 4.38192 4.38833 4.53466 4.54548 4.60997 4.63379 4.68431 4.91713 4.96773 5.05553 5.11633 5.23344 5.52568 5.57061 5.63191 6.17032 6.27517 6.45358 7.02133 7.24896 7.70287 8.34022 8.85062 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.016065 B = 0.002762 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.486233 B =10135.155448 C =11439.154190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.405 6.405 3 C 0.048 3.952 4 C 0.060 3.940 5 N -0.445 5.445 6 C -0.343 4.343 7 H 0.093 0.907 8 C 0.020 3.980 9 N -0.865 5.865 10 Si 0.960 3.040 11 H -0.287 1.287 12 H -0.288 1.288 13 H -0.256 1.256 14 C 0.490 3.510 15 O -0.601 6.601 16 C -0.155 4.155 17 C -0.050 4.050 18 C -0.148 4.148 19 C 0.137 3.863 20 O -0.311 6.311 21 C 0.004 3.996 22 C 0.466 3.534 23 F -0.185 7.185 24 F -0.168 7.168 25 F -0.185 7.185 26 C -0.193 4.193 27 C -0.091 4.091 28 H 0.084 0.916 29 H 0.063 0.937 30 H 0.038 0.962 31 H 0.097 0.903 32 H 0.046 0.954 33 H 0.065 0.935 34 H 0.132 0.868 35 H 0.258 0.742 36 H 0.111 0.889 37 H 0.147 0.853 38 H 0.140 0.860 39 H 0.140 0.860 40 H 0.181 0.819 41 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.418 19.701 9.572 23.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.324 6.324 3 C -0.029 4.029 4 C -0.062 4.062 5 N -0.164 5.164 6 C -0.470 4.470 7 H 0.110 0.890 8 C -0.186 4.186 9 N -0.501 5.501 10 Si 0.785 3.215 11 H -0.214 1.214 12 H -0.214 1.214 13 H -0.180 1.180 14 C 0.281 3.719 15 O -0.485 6.485 16 C -0.159 4.159 17 C -0.070 4.070 18 C -0.167 4.167 19 C 0.092 3.908 20 O -0.225 6.225 21 C -0.072 4.072 22 C 0.412 3.588 23 F -0.167 7.167 24 F -0.149 7.149 25 F -0.167 7.167 26 C -0.211 4.211 27 C -0.109 4.109 28 H 0.103 0.897 29 H 0.081 0.919 30 H 0.057 0.943 31 H 0.115 0.885 32 H 0.065 0.935 33 H 0.083 0.917 34 H 0.149 0.851 35 H 0.067 0.933 36 H 0.129 0.871 37 H 0.165 0.835 38 H 0.157 0.843 39 H 0.158 0.842 40 H 0.198 0.802 41 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -7.851 19.358 8.981 22.738 hybrid contribution 0.175 -0.781 -0.834 1.156 sum -7.676 18.577 8.147 21.689 Atomic orbital electron populations 1.22877 0.80413 1.03183 1.00602 1.88066 1.20692 1.28236 1.95411 1.23099 0.93242 0.85334 1.01243 1.22852 0.93961 1.01143 0.88259 1.43352 1.56749 1.05452 1.10869 1.19414 1.06578 0.82257 1.38792 0.88974 1.25909 0.93226 1.01284 0.98134 1.70015 1.02336 1.42952 1.34811 0.85528 0.77117 0.79657 0.79200 1.21397 1.21410 1.18018 1.18475 0.82878 0.86168 0.84342 1.90535 1.55410 1.75378 1.27196 1.20234 1.00727 0.93807 1.01128 1.20928 0.95603 0.93540 0.96899 1.20372 1.02621 0.92686 1.01013 1.18966 0.95118 0.81482 0.95263 1.85944 1.58520 1.20005 1.58054 1.24189 0.98729 0.86927 0.97336 1.20183 0.74550 0.90409 0.73648 1.93221 1.94728 1.86351 1.42372 1.93237 1.72590 1.84131 1.64988 1.93220 1.35503 1.96744 1.91205 1.21517 1.01115 0.94552 1.03953 1.22243 0.99169 0.94422 0.95040 0.89711 0.91869 0.94336 0.88537 0.93545 0.91674 0.85125 0.93269 0.87108 0.83476 0.84269 0.84227 0.80183 0.81066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.62 11.01 113.37 1.25 1.87 16 2 O -0.40 -14.10 8.97 -148.98 -1.34 -15.44 16 3 C 0.05 1.40 5.08 71.98 0.37 1.76 16 4 C 0.06 2.20 5.32 86.38 0.46 2.66 16 5 N -0.45 -22.51 2.57 -639.18 -1.64 -24.15 16 6 C -0.34 -19.54 8.83 84.09 0.74 -18.80 16 7 H 0.09 5.16 6.69 -2.91 -0.02 5.14 16 8 C 0.02 1.21 4.13 84.95 0.35 1.56 16 9 N -0.87 -53.98 11.85 21.68 0.26 -53.72 16 10 Si 0.96 47.67 29.63 68.60 2.03 49.70 16 11 H -0.29 -14.65 7.11 99.48 0.71 -13.95 16 12 H -0.29 -14.10 7.11 99.48 0.71 -13.40 16 13 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 14 C 0.49 25.93 6.65 86.68 0.58 26.51 16 15 O -0.60 -37.86 14.42 -4.09 -0.06 -37.92 16 16 C -0.16 -6.27 5.63 -20.08 -0.11 -6.39 16 17 C -0.05 -1.90 9.59 22.52 0.22 -1.69 16 18 C -0.15 -4.29 9.97 22.33 0.22 -4.07 16 19 C 0.14 3.18 6.70 22.64 0.15 3.33 16 20 O -0.31 -6.00 10.01 -90.39 -0.91 -6.90 16 21 C 0.00 0.05 4.69 71.98 0.34 0.38 16 22 C 0.47 6.46 3.32 71.98 0.24 6.70 16 23 F -0.19 -3.27 17.26 44.97 0.78 -2.49 16 24 F -0.17 -2.10 17.32 44.97 0.78 -1.32 16 25 F -0.19 -3.29 17.26 44.97 0.78 -2.51 16 26 C -0.19 -3.88 9.01 22.32 0.20 -3.68 16 27 C -0.09 -2.57 7.52 22.52 0.17 -2.40 16 28 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 29 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.10 1.83 8.14 -2.39 -0.02 1.82 16 32 H 0.05 1.36 7.41 -2.39 -0.02 1.34 16 33 H 0.06 2.48 8.11 -2.38 -0.02 2.46 16 34 H 0.13 3.99 3.83 -5.53 -0.02 3.97 16 35 H 0.26 15.67 8.32 -92.71 -0.77 14.90 16 36 H 0.11 4.71 7.90 -2.91 -0.02 4.69 16 37 H 0.15 3.68 8.06 -2.92 -0.02 3.66 16 38 H 0.14 0.72 7.66 -2.39 -0.02 0.70 16 39 H 0.14 0.72 7.64 -2.38 -0.02 0.71 16 40 H 0.18 1.66 6.28 -2.91 -0.02 1.65 16 41 H 0.17 4.26 2.69 -2.91 -0.01 4.26 16 Total: -1.00 -83.00 355.20 6.93 -76.07 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: 1.09 Total: 10.92 kcal Atomic # 6 Polarization: 2.59 SS G_CDS: 5.17 Total: 7.76 kcal Atomic # 7 Polarization: -76.49 SS G_CDS: -1.39 Total: -77.87 kcal Atomic # 8 Polarization: -57.95 SS G_CDS: -2.30 Total: -60.25 kcal Atomic # 9 Polarization: -8.66 SS G_CDS: 2.33 Total: -6.33 kcal Atomic # 14 Polarization: 47.67 SS G_CDS: 2.03 Total: 49.70 kcal Total: -83.00 6.93 -76.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457182603.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.499 kcal (2) G-P(sol) polarization free energy of solvation -83.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -219.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -212.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds