Wall clock time and date at job start Wed Apr 1 2020 04:30:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42903 * 113.99674 * 2 1 4 4 C 1.53003 * 109.47153 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47208 * 64.99682 * 4 3 2 6 6 C 1.37099 * 119.99968 * 269.99970 * 5 4 3 7 7 H 1.08001 * 119.99900 * 142.95406 * 6 5 4 8 8 C 1.38949 * 120.00089 * 322.95352 * 6 5 4 9 9 N 1.31412 * 120.00131 * 338.44246 * 8 6 5 10 10 Si 1.86796 * 119.99972 * 158.44286 * 8 6 5 11 11 H 1.48498 * 109.47346 * 90.00073 * 10 8 6 12 12 H 1.48503 * 109.47160 * 209.99834 * 10 8 6 13 13 H 1.48496 * 109.47322 * 329.99994 * 10 8 6 14 14 C 1.34777 * 120.00184 * 90.00633 * 5 4 3 15 15 O 1.21288 * 119.99559 * 355.08685 * 14 5 4 16 16 C 1.50697 * 120.00335 * 175.09204 * 14 5 4 17 17 O 1.42892 * 109.47027 * 180.59359 * 16 14 5 18 18 C 1.35905 * 116.99732 * 181.90476 * 17 16 14 19 19 C 1.38752 * 120.05487 * 5.59328 * 18 17 16 20 20 C 1.38128 * 119.94017 * 180.02562 * 19 18 17 21 21 C 1.38285 * 120.05981 * 0.02562 * 20 19 18 22 22 C 1.38252 * 120.11008 * 0.02562 * 21 20 19 23 23 C 1.38167 * 120.05459 * 359.97438 * 22 21 20 24 24 C 1.50694 * 120.02673 * 179.97438 * 23 22 21 25 25 F 1.39901 * 109.47127 * 0.02562 * 24 23 22 26 26 F 1.39900 * 109.47127 * 120.02493 * 24 23 22 27 27 F 1.39908 * 109.47109 * 240.02361 * 24 23 22 28 28 H 1.08997 * 109.47178 * 60.00868 * 1 2 3 29 29 H 1.09008 * 109.46714 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47451 * 299.99640 * 1 2 3 31 31 H 1.08998 * 109.47505 * 59.99855 * 3 2 1 32 32 H 1.09011 * 109.46902 * 299.99739 * 3 2 1 33 33 H 1.09003 * 109.46495 * 304.99607 * 4 3 2 34 34 H 1.08999 * 109.47023 * 185.00012 * 4 3 2 35 35 H 0.96996 * 120.00343 * 185.06401 * 9 8 6 36 36 H 1.09005 * 109.47043 * 60.59324 * 16 14 5 37 37 H 1.08998 * 109.46710 * 300.59651 * 16 14 5 38 38 H 1.07989 * 120.03001 * 0.02562 * 19 18 17 39 39 H 1.08003 * 119.97038 * 179.72470 * 20 19 18 40 40 H 1.07995 * 119.94554 * 179.97438 * 21 20 19 41 41 H 1.07993 * 119.97266 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9756 0.5645 -1.2527 6 6 4.0970 -0.7985 -1.3368 7 1 3.8297 -1.3090 -2.2503 8 6 4.5637 -1.5231 -0.2470 9 7 5.2736 -0.9258 0.6838 10 14 4.1822 -3.3461 -0.1049 11 1 5.2545 -4.1296 -0.7694 12 1 4.1078 -3.7260 1.3288 13 1 2.8811 -3.6322 -0.7610 14 6 4.2615 1.3338 -2.3218 15 8 4.0696 2.5305 -2.2764 16 6 4.8195 0.7071 -3.5735 17 8 5.0508 1.7223 -4.5521 18 6 5.5194 1.3176 -5.7620 19 6 5.6419 -0.0357 -6.0425 20 6 6.1189 -0.4443 -7.2727 21 6 6.4747 0.4940 -8.2241 22 6 6.3545 1.8431 -7.9467 23 6 5.8779 2.2570 -6.7176 24 6 5.7477 3.7276 -6.4156 25 9 6.1665 4.4703 -7.5248 26 9 4.4116 4.0286 -6.1304 27 9 6.5442 4.0492 -5.3113 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0278 0.0005 30 1 -0.3634 0.5137 0.8900 31 1 1.6885 1.8465 0.8899 32 1 1.6885 1.8464 -0.8901 33 1 3.8513 0.5684 0.8410 34 1 3.9784 2.1767 0.0889 35 1 5.6614 -1.4447 1.4058 36 1 4.1072 -0.0193 -3.9648 37 1 5.7590 0.2057 -3.3410 38 1 5.3646 -0.7689 -5.2997 39 1 6.2187 -1.4975 -7.4900 40 1 6.8478 0.1725 -9.1852 41 1 6.6334 2.5740 -8.6912 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457183813.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:27 Heat of formation + Delta-G solvation = -227.157220 kcal Electronic energy + Delta-G solvation = -31473.701501 eV Core-core repulsion = 26519.188764 eV Total energy + Delta-G solvation = -4954.512737 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.118 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.82469 -47.40240 -47.20103 -40.24408 -38.72667 -37.38155 -36.73944 -34.72700 -32.12053 -31.68852 -30.39232 -29.67918 -27.38292 -25.81823 -25.75963 -24.73368 -22.78378 -21.95531 -21.59550 -19.25539 -18.72662 -18.14290 -18.13072 -17.52217 -17.05341 -16.14854 -15.89374 -15.52830 -15.35507 -15.30250 -15.05764 -14.57116 -14.39339 -14.27620 -14.15895 -14.14600 -13.98306 -13.71690 -13.41573 -13.40703 -13.36891 -13.10601 -12.62493 -12.43994 -12.20251 -12.01462 -11.67858 -11.57631 -11.23407 -11.20643 -11.04824 -10.96836 -10.77514 -10.62020 -10.42600 -10.12078 -9.32803 -9.23176 -9.00230 -8.53504 -8.31934 -7.59441 -6.44001 -4.12059 0.91356 1.28329 2.90623 3.06371 3.13528 3.20559 3.26544 3.46881 3.71893 3.97314 4.09081 4.25649 4.48834 4.68269 4.72591 4.81595 4.87530 4.96584 5.06762 5.20143 5.41577 5.60050 5.64635 5.66991 5.70482 5.77681 5.91236 5.98310 6.05183 6.06594 6.11657 6.21601 6.28965 6.29583 6.56439 6.63467 7.19328 7.34622 7.43413 7.73045 7.93123 8.26160 9.01511 9.36854 9.79294 10.58621 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.012994 B = 0.003466 C = 0.003042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2154.317692 B = 8075.888806 C = 9201.454515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.363 6.363 3 C 0.053 3.947 4 C 0.116 3.884 5 N -0.421 5.421 6 C -0.338 4.338 7 H 0.085 0.915 8 C 0.057 3.943 9 N -0.858 5.858 10 Si 0.917 3.083 11 H -0.279 1.279 12 H -0.282 1.282 13 H -0.267 1.267 14 C 0.468 3.532 15 O -0.586 6.586 16 C 0.060 3.940 17 O -0.283 6.283 18 C 0.191 3.809 19 C -0.214 4.214 20 C -0.047 4.047 21 C -0.171 4.171 22 C -0.038 4.038 23 C -0.226 4.226 24 C 0.517 3.483 25 F -0.187 7.187 26 F -0.171 7.171 27 F -0.170 7.170 28 H 0.032 0.968 29 H 0.077 0.923 30 H 0.030 0.970 31 H 0.040 0.960 32 H 0.041 0.959 33 H 0.116 0.884 34 H 0.072 0.928 35 H 0.272 0.728 36 H 0.083 0.917 37 H 0.094 0.906 38 H 0.145 0.855 39 H 0.133 0.867 40 H 0.132 0.868 41 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.009 -0.173 -12.107 12.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.281 6.281 3 C -0.025 4.025 4 C -0.008 4.008 5 N -0.141 5.141 6 C -0.465 4.465 7 H 0.103 0.897 8 C -0.150 4.150 9 N -0.494 5.494 10 Si 0.743 3.257 11 H -0.205 1.205 12 H -0.207 1.207 13 H -0.191 1.191 14 C 0.256 3.744 15 O -0.471 6.471 16 C -0.017 4.017 17 O -0.194 6.194 18 C 0.143 3.857 19 C -0.233 4.233 20 C -0.065 4.065 21 C -0.190 4.190 22 C -0.056 4.056 23 C -0.229 4.229 24 C 0.463 3.537 25 F -0.168 7.168 26 F -0.152 7.152 27 F -0.152 7.152 28 H 0.050 0.950 29 H 0.095 0.905 30 H 0.048 0.952 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.134 0.866 34 H 0.091 0.909 35 H 0.082 0.918 36 H 0.101 0.899 37 H 0.112 0.888 38 H 0.162 0.838 39 H 0.150 0.850 40 H 0.150 0.850 41 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -0.014 0.457 -11.719 11.728 hybrid contribution -0.465 -0.846 0.279 1.005 sum -0.479 -0.389 -11.440 11.456 Atomic orbital electron populations 1.22645 0.83465 1.01704 0.98864 1.88140 1.17322 1.27628 1.95040 1.23015 0.96354 0.84390 0.98750 1.21517 0.89521 0.99096 0.90617 1.43183 1.55875 1.06125 1.08900 1.19246 1.45210 0.80400 1.01673 0.89690 1.25276 0.93809 1.00075 0.95855 1.69816 1.28666 1.37052 1.13909 0.86104 0.79187 0.82462 0.77911 1.20549 1.20715 1.19139 1.19736 0.82456 0.86592 0.85626 1.90594 1.57849 1.14897 1.83732 1.22562 1.02440 0.89213 0.87499 1.86221 1.77449 1.36459 1.19229 1.18751 0.89545 0.92205 0.85231 1.21439 1.07545 0.94246 1.00022 1.21180 0.93178 1.00103 0.92035 1.20981 1.05266 0.92161 1.00557 1.20814 0.93954 0.97063 0.93755 1.19337 1.15269 0.90671 0.97581 1.17983 0.74406 0.87257 0.74024 1.93115 1.90319 1.79532 1.53845 1.93239 1.34287 1.94271 1.93414 1.93245 1.73877 1.93852 1.54189 0.94969 0.90464 0.95162 0.94177 0.94042 0.86602 0.90939 0.91787 0.89922 0.88768 0.83763 0.84952 0.85049 0.84208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 11.01 101.05 1.11 1.60 16 2 O -0.36 -7.62 10.18 -35.23 -0.36 -7.97 16 3 C 0.05 1.08 6.28 37.16 0.23 1.32 16 4 C 0.12 2.71 5.40 -4.04 -0.02 2.69 16 5 N -0.42 -10.30 2.50 -114.81 -0.29 -10.58 16 6 C -0.34 -8.15 8.10 -14.93 -0.12 -8.27 16 7 H 0.09 1.94 7.11 -52.49 -0.37 1.56 16 8 C 0.06 1.38 4.96 -17.47 -0.09 1.29 16 9 N -0.86 -21.79 11.43 55.50 0.63 -21.16 16 10 Si 0.92 19.05 29.61 -169.99 -5.03 14.01 16 11 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 12 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 13 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 14 C 0.47 11.39 7.70 -10.99 -0.08 11.30 16 15 O -0.59 -15.83 16.13 -14.36 -0.23 -16.06 16 16 C 0.06 1.20 4.01 36.00 0.14 1.35 16 17 O -0.28 -5.70 8.58 -39.35 -0.34 -6.04 16 18 C 0.19 3.16 6.56 -39.22 -0.26 2.90 16 19 C -0.21 -2.89 9.07 -39.43 -0.36 -3.24 16 20 C -0.05 -0.50 10.04 -39.60 -0.40 -0.90 16 21 C -0.17 -1.71 10.04 -39.56 -0.40 -2.11 16 22 C -0.04 -0.44 9.43 -39.60 -0.37 -0.81 16 23 C -0.23 -3.44 5.38 -104.47 -0.56 -4.00 16 24 C 0.52 8.50 2.99 36.00 0.11 8.61 16 25 F -0.19 -2.64 15.97 2.25 0.04 -2.60 16 26 F -0.17 -3.13 16.95 2.25 0.04 -3.09 16 27 F -0.17 -3.14 16.95 2.25 0.04 -3.10 16 28 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.08 1.09 8.14 -51.92 -0.42 0.67 16 30 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.04 0.88 8.14 -51.92 -0.42 0.46 16 33 H 0.12 2.89 5.49 -51.93 -0.29 2.60 16 34 H 0.07 1.71 7.49 -51.93 -0.39 1.32 16 35 H 0.27 6.53 8.32 -40.82 -0.34 6.19 16 36 H 0.08 1.47 6.73 -51.93 -0.35 1.12 16 37 H 0.09 1.79 7.99 -51.93 -0.41 1.38 16 38 H 0.14 1.83 6.30 -52.49 -0.33 1.50 16 39 H 0.13 1.02 8.06 -52.48 -0.42 0.59 16 40 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 41 H 0.14 1.31 7.15 -52.49 -0.38 0.94 16 LS Contribution 363.98 15.07 5.49 5.49 Total: -1.00 -30.46 363.98 -5.69 -36.15 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -4.61 Total: 3.24 kcal Atomic # 6 Polarization: 12.79 SS G_CDS: -1.06 Total: 11.73 kcal Atomic # 7 Polarization: -32.09 SS G_CDS: 0.35 Total: -31.74 kcal Atomic # 8 Polarization: -29.15 SS G_CDS: -0.93 Total: -30.08 kcal Atomic # 9 Polarization: -8.90 SS G_CDS: 0.11 Total: -8.79 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -5.03 Total: 14.01 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.46 -5.69 -36.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457183813.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -191.011 kcal (2) G-P(sol) polarization free energy of solvation -30.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -221.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -227.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds