Wall clock time and date at job start Wed Apr 1 2020 04:30:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42903 * 113.99674 * 2 1 4 4 C 1.53003 * 109.47153 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47208 * 64.99682 * 4 3 2 6 6 C 1.37099 * 119.99968 * 269.99970 * 5 4 3 7 7 H 1.08001 * 119.99900 * 142.95406 * 6 5 4 8 8 C 1.38949 * 120.00089 * 322.95352 * 6 5 4 9 9 N 1.31412 * 120.00131 * 338.44246 * 8 6 5 10 10 Si 1.86796 * 119.99972 * 158.44286 * 8 6 5 11 11 H 1.48498 * 109.47346 * 90.00073 * 10 8 6 12 12 H 1.48503 * 109.47160 * 209.99834 * 10 8 6 13 13 H 1.48496 * 109.47322 * 329.99994 * 10 8 6 14 14 C 1.34777 * 120.00184 * 90.00633 * 5 4 3 15 15 O 1.21288 * 119.99559 * 355.08685 * 14 5 4 16 16 C 1.50697 * 120.00335 * 175.09204 * 14 5 4 17 17 O 1.42892 * 109.47027 * 180.59359 * 16 14 5 18 18 C 1.35905 * 116.99732 * 181.90476 * 17 16 14 19 19 C 1.38752 * 120.05487 * 5.59328 * 18 17 16 20 20 C 1.38128 * 119.94017 * 180.02562 * 19 18 17 21 21 C 1.38285 * 120.05981 * 0.02562 * 20 19 18 22 22 C 1.38252 * 120.11008 * 0.02562 * 21 20 19 23 23 C 1.38167 * 120.05459 * 359.97438 * 22 21 20 24 24 C 1.50694 * 120.02673 * 179.97438 * 23 22 21 25 25 F 1.39901 * 109.47127 * 0.02562 * 24 23 22 26 26 F 1.39900 * 109.47127 * 120.02493 * 24 23 22 27 27 F 1.39908 * 109.47109 * 240.02361 * 24 23 22 28 28 H 1.08997 * 109.47178 * 60.00868 * 1 2 3 29 29 H 1.09008 * 109.46714 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47451 * 299.99640 * 1 2 3 31 31 H 1.08998 * 109.47505 * 59.99855 * 3 2 1 32 32 H 1.09011 * 109.46902 * 299.99739 * 3 2 1 33 33 H 1.09003 * 109.46495 * 304.99607 * 4 3 2 34 34 H 1.08999 * 109.47023 * 185.00012 * 4 3 2 35 35 H 0.96996 * 120.00343 * 185.06401 * 9 8 6 36 36 H 1.09005 * 109.47043 * 60.59324 * 16 14 5 37 37 H 1.08998 * 109.46710 * 300.59651 * 16 14 5 38 38 H 1.07989 * 120.03001 * 0.02562 * 19 18 17 39 39 H 1.08003 * 119.97038 * 179.72470 * 20 19 18 40 40 H 1.07995 * 119.94554 * 179.97438 * 21 20 19 41 41 H 1.07993 * 119.97266 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9756 0.5645 -1.2527 6 6 4.0970 -0.7985 -1.3368 7 1 3.8297 -1.3090 -2.2503 8 6 4.5637 -1.5231 -0.2470 9 7 5.2736 -0.9258 0.6838 10 14 4.1822 -3.3461 -0.1049 11 1 5.2545 -4.1296 -0.7694 12 1 4.1078 -3.7260 1.3288 13 1 2.8811 -3.6322 -0.7610 14 6 4.2615 1.3338 -2.3218 15 8 4.0696 2.5305 -2.2764 16 6 4.8195 0.7071 -3.5735 17 8 5.0508 1.7223 -4.5521 18 6 5.5194 1.3176 -5.7620 19 6 5.6419 -0.0357 -6.0425 20 6 6.1189 -0.4443 -7.2727 21 6 6.4747 0.4940 -8.2241 22 6 6.3545 1.8431 -7.9467 23 6 5.8779 2.2570 -6.7176 24 6 5.7477 3.7276 -6.4156 25 9 6.1665 4.4703 -7.5248 26 9 4.4116 4.0286 -6.1304 27 9 6.5442 4.0492 -5.3113 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0278 0.0005 30 1 -0.3634 0.5137 0.8900 31 1 1.6885 1.8465 0.8899 32 1 1.6885 1.8464 -0.8901 33 1 3.8513 0.5684 0.8410 34 1 3.9784 2.1767 0.0889 35 1 5.6614 -1.4447 1.4058 36 1 4.1072 -0.0193 -3.9648 37 1 5.7590 0.2057 -3.3410 38 1 5.3646 -0.7689 -5.2997 39 1 6.2187 -1.4975 -7.4900 40 1 6.8478 0.1725 -9.1852 41 1 6.6334 2.5740 -8.6912 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457183813.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:26 Heat of formation + Delta-G solvation = -244.303176 kcal Electronic energy + Delta-G solvation = -31474.445006 eV Core-core repulsion = 26519.188764 eV Total energy + Delta-G solvation = -4955.256241 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.118 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -51.12966 -48.66954 -48.59115 -41.49005 -40.40523 -38.74769 -38.20787 -36.60397 -33.56737 -33.15238 -31.74576 -31.04273 -28.89558 -27.29212 -26.92112 -26.48779 -24.14339 -23.05841 -23.02127 -21.08480 -19.94882 -19.46804 -19.40971 -19.08566 -18.43335 -17.80058 -17.44505 -16.97725 -16.85786 -16.76867 -16.13271 -16.09279 -15.92996 -15.74200 -15.50516 -15.40183 -15.29963 -15.04516 -14.93329 -14.78657 -14.74027 -14.60581 -13.78383 -13.70214 -13.62858 -13.52902 -13.28434 -12.92712 -12.87035 -12.57727 -12.53582 -12.50822 -12.15034 -12.08164 -11.97603 -11.81046 -11.05687 -10.56573 -10.39925 -10.28760 -9.49990 -9.39484 -8.28851 -6.02537 -0.05720 0.30242 1.41883 1.53319 1.62541 1.66003 1.78022 1.90512 2.37296 2.51704 2.77043 2.96382 3.05042 3.08410 3.17280 3.42924 3.80000 3.86379 4.09507 4.12559 4.21736 4.26728 4.31367 4.35524 4.42403 4.46089 4.51855 4.58949 4.59452 4.75460 4.78285 4.84890 5.11198 5.25384 5.31124 5.40142 5.49419 5.68335 5.92097 6.16519 6.39288 6.40249 7.13781 7.49711 7.92857 8.74989 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.012994 B = 0.003466 C = 0.003042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2154.317692 B = 8075.888806 C = 9201.454515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.392 6.392 3 C 0.065 3.935 4 C 0.112 3.888 5 N -0.427 5.427 6 C -0.348 4.348 7 H 0.098 0.902 8 C 0.020 3.980 9 N -0.890 5.890 10 Si 0.981 3.019 11 H -0.267 1.267 12 H -0.287 1.287 13 H -0.264 1.264 14 C 0.450 3.550 15 O -0.625 6.625 16 C 0.077 3.923 17 O -0.317 6.317 18 C 0.152 3.848 19 C -0.221 4.221 20 C -0.038 4.038 21 C -0.152 4.152 22 C -0.038 4.038 23 C -0.243 4.243 24 C 0.512 3.488 25 F -0.173 7.173 26 F -0.188 7.188 27 F -0.189 7.189 28 H 0.037 0.963 29 H 0.095 0.905 30 H 0.051 0.949 31 H 0.067 0.933 32 H 0.029 0.971 33 H 0.102 0.898 34 H 0.057 0.943 35 H 0.273 0.727 36 H 0.102 0.898 37 H 0.098 0.902 38 H 0.148 0.852 39 H 0.171 0.829 40 H 0.175 0.825 41 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.025 -2.794 -14.442 14.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.311 6.311 3 C -0.013 4.013 4 C -0.012 4.012 5 N -0.145 5.145 6 C -0.475 4.475 7 H 0.115 0.885 8 C -0.185 4.185 9 N -0.527 5.527 10 Si 0.804 3.196 11 H -0.192 1.192 12 H -0.213 1.213 13 H -0.188 1.188 14 C 0.239 3.761 15 O -0.513 6.513 16 C 0.000 4.000 17 O -0.229 6.229 18 C 0.105 3.895 19 C -0.239 4.239 20 C -0.055 4.055 21 C -0.169 4.169 22 C -0.056 4.056 23 C -0.245 4.245 24 C 0.458 3.542 25 F -0.154 7.154 26 F -0.170 7.170 27 F -0.170 7.170 28 H 0.056 0.944 29 H 0.113 0.887 30 H 0.070 0.930 31 H 0.085 0.915 32 H 0.047 0.953 33 H 0.119 0.881 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.120 0.880 37 H 0.116 0.884 38 H 0.166 0.834 39 H 0.189 0.811 40 H 0.193 0.807 41 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -0.031 -2.178 -14.076 14.243 hybrid contribution -0.432 -0.008 0.904 1.002 sum -0.463 -2.186 -13.172 13.360 Atomic orbital electron populations 1.22891 0.80749 1.03369 1.00187 1.88068 1.20317 1.27460 1.95286 1.22776 0.94341 0.84777 0.99375 1.21476 0.91728 0.97839 0.90118 1.43420 1.55457 1.06570 1.09092 1.19588 1.45230 0.80280 1.02386 0.88476 1.26047 0.93217 1.03926 0.95268 1.69922 1.29601 1.38652 1.14540 0.85130 0.79243 0.77722 0.77455 1.19202 1.21263 1.18790 1.20508 0.82199 0.86346 0.87071 1.90546 1.59515 1.16567 1.84710 1.22268 1.02617 0.88999 0.86164 1.86150 1.79029 1.36978 1.20773 1.19110 0.92028 0.94026 0.84339 1.21621 1.07863 0.92822 1.01620 1.21663 0.91043 1.02300 0.90515 1.21521 1.02624 0.90945 1.01842 1.21201 0.92968 0.98800 0.92588 1.19492 1.16872 0.89198 0.98968 1.18294 0.73469 0.88641 0.73817 1.93127 1.90067 1.79426 1.52819 1.93196 1.35616 1.94529 1.93613 1.93200 1.74287 1.94132 1.55422 0.94387 0.88673 0.93035 0.91481 0.95305 0.88070 0.92433 0.91678 0.88034 0.88375 0.83450 0.81146 0.80741 0.81894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.73 11.01 113.37 1.25 1.98 16 2 O -0.39 -16.27 10.18 -148.98 -1.52 -17.78 16 3 C 0.06 2.72 6.28 71.98 0.45 3.17 16 4 C 0.11 5.45 5.40 86.38 0.47 5.91 16 5 N -0.43 -21.49 2.50 -635.54 -1.59 -23.08 16 6 C -0.35 -16.84 8.10 84.04 0.68 -16.16 16 7 H 0.10 4.37 7.11 -2.91 -0.02 4.34 16 8 C 0.02 0.94 4.96 84.93 0.42 1.36 16 9 N -0.89 -45.86 11.43 21.66 0.25 -45.62 16 10 Si 0.98 38.32 29.61 68.60 2.03 40.35 16 11 H -0.27 -9.84 7.11 99.48 0.71 -9.13 16 12 H -0.29 -11.38 7.11 99.48 0.71 -10.67 16 13 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 14 C 0.45 22.81 7.70 87.66 0.67 23.49 16 15 O -0.63 -35.75 16.13 15.98 0.26 -35.50 16 16 C 0.08 3.16 4.01 71.23 0.29 3.44 16 17 O -0.32 -13.32 8.58 -73.44 -0.63 -13.95 16 18 C 0.15 5.02 6.56 22.51 0.15 5.17 16 19 C -0.22 -5.58 9.07 22.37 0.20 -5.38 16 20 C -0.04 -0.64 10.04 22.25 0.22 -0.42 16 21 C -0.15 -2.30 10.04 22.28 0.22 -2.08 16 22 C -0.04 -0.77 9.43 22.26 0.21 -0.56 16 23 C -0.24 -7.28 5.38 -19.77 -0.11 -7.39 16 24 C 0.51 17.25 2.99 71.23 0.21 17.47 16 25 F -0.17 -4.83 15.97 44.97 0.72 -4.11 16 26 F -0.19 -7.22 16.95 44.97 0.76 -6.46 16 27 F -0.19 -7.33 16.95 44.97 0.76 -6.57 16 28 H 0.04 1.08 8.14 -2.39 -0.02 1.07 16 29 H 0.09 2.49 8.14 -2.38 -0.02 2.47 16 30 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.07 2.39 8.14 -2.39 -0.02 2.38 16 32 H 0.03 1.26 8.14 -2.38 -0.02 1.24 16 33 H 0.10 5.23 5.49 -2.39 -0.01 5.22 16 34 H 0.06 2.89 7.49 -2.39 -0.02 2.87 16 35 H 0.27 13.30 8.32 -92.71 -0.77 12.53 16 36 H 0.10 3.65 6.73 -2.38 -0.02 3.64 16 37 H 0.10 3.84 7.99 -2.39 -0.02 3.82 16 38 H 0.15 3.52 6.30 -2.92 -0.02 3.50 16 39 H 0.17 1.63 8.06 -2.91 -0.02 1.61 16 40 H 0.18 1.23 8.06 -2.91 -0.02 1.21 16 41 H 0.16 2.50 7.15 -2.91 -0.02 2.48 16 Total: -1.00 -69.70 363.98 7.46 -62.24 By element: Atomic # 1 Polarization: 19.40 SS G_CDS: 1.08 Total: 20.48 kcal Atomic # 6 Polarization: 24.66 SS G_CDS: 5.34 Total: 30.00 kcal Atomic # 7 Polarization: -67.36 SS G_CDS: -1.34 Total: -68.70 kcal Atomic # 8 Polarization: -65.34 SS G_CDS: -1.89 Total: -67.23 kcal Atomic # 9 Polarization: -19.38 SS G_CDS: 2.24 Total: -17.14 kcal Atomic # 14 Polarization: 38.32 SS G_CDS: 2.03 Total: 40.35 kcal Total: -69.70 7.46 -62.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457183813.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -182.066 kcal (2) G-P(sol) polarization free energy of solvation -69.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -251.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -244.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds