Wall clock time and date at job start Wed Apr 1 2020 04:29:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42900 * 114.00065 * 2 1 4 4 C 1.52998 * 109.47058 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.47468 * 65.00131 * 4 3 2 6 6 C 1.36870 * 119.99667 * 83.83590 * 5 4 3 7 7 H 1.08004 * 120.00424 * 219.48858 * 6 5 4 8 8 C 1.39051 * 120.00372 * 39.49769 * 6 5 4 9 9 N 1.31368 * 119.99748 * 18.95009 * 8 6 5 10 10 Si 1.86794 * 120.00472 * 198.95458 * 8 6 5 11 11 H 1.48502 * 109.47046 * 359.97438 * 10 8 6 12 12 H 1.48499 * 109.47291 * 119.99641 * 10 8 6 13 13 H 1.48493 * 109.47224 * 239.99762 * 10 8 6 14 14 C 1.34768 * 120.00012 * 263.84005 * 5 4 3 15 15 O 1.21594 * 120.00085 * 4.60189 * 14 5 4 16 16 C 1.47738 * 120.00046 * 184.59466 * 14 5 4 17 17 C 1.39683 * 120.12141 * 22.54104 * 16 14 5 18 18 C 1.37942 * 119.95872 * 179.69214 * 17 16 14 19 19 C 1.38306 * 120.21096 * 0.59517 * 18 17 16 20 20 C 1.38833 * 120.25248 * 359.67796 * 19 18 17 21 21 O 1.35913 * 119.98094 * 179.97438 * 20 19 18 22 22 C 1.42895 * 117.00032 * 0.02562 * 21 20 19 23 23 C 1.52997 * 109.47193 * 179.97438 * 22 21 20 24 24 F 1.39904 * 109.47347 * 59.99665 * 23 22 21 25 25 F 1.39899 * 109.47527 * 180.02562 * 23 22 21 26 26 F 1.39903 * 109.47159 * 299.99820 * 23 22 21 27 27 C 1.38470 * 120.03438 * 0.02562 * 20 19 18 28 28 H 1.09003 * 109.47105 * 299.99115 * 1 2 3 29 29 H 1.08998 * 109.47698 * 59.99751 * 1 2 3 30 30 H 1.09007 * 109.47102 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46820 * 60.00262 * 3 2 1 32 32 H 1.09005 * 109.47222 * 300.00578 * 3 2 1 33 33 H 1.09003 * 109.46914 * 185.00351 * 4 3 2 34 34 H 1.08999 * 109.47411 * 304.99732 * 4 3 2 35 35 H 0.96996 * 119.99812 * 179.97438 * 9 8 6 36 36 H 1.08000 * 120.01954 * 359.97438 * 17 16 14 37 37 H 1.07997 * 119.89400 * 180.29285 * 18 17 16 38 38 H 1.07998 * 119.87618 * 179.69130 * 19 18 17 39 39 H 1.09005 * 109.47022 * 299.99755 * 22 21 20 40 40 H 1.09000 * 109.47487 * 59.99510 * 22 21 20 41 41 H 1.08000 * 120.10622 * 180.02562 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2527 6 6 4.1445 1.3312 -2.3739 7 1 3.8432 0.9508 -3.3387 8 6 4.7040 2.6000 -2.2708 9 7 5.4017 2.9256 -1.2064 10 14 4.4635 3.8415 -3.6456 11 1 3.6457 3.2323 -4.7251 12 1 3.7678 5.0406 -3.1135 13 1 5.7863 4.2381 -4.1913 14 6 4.2145 -0.7611 -1.3006 15 8 3.9848 -1.4557 -0.3294 16 6 4.7552 -1.3702 -2.5332 17 6 5.4502 -0.5855 -3.4563 18 6 5.9592 -1.1590 -4.6030 19 6 5.7730 -2.5073 -4.8485 20 6 5.0786 -3.2943 -3.9397 21 8 4.8985 -4.6186 -4.1868 22 6 5.4508 -5.1333 -5.4000 23 6 5.1498 -6.6298 -5.5029 24 9 3.7649 -6.8283 -5.4999 25 9 5.6910 -7.1338 -6.6905 26 9 5.7187 -7.2960 -4.4122 27 6 4.5686 -2.7306 -2.7824 28 1 -0.3633 0.5137 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 1.6886 1.8463 0.8900 32 1 1.6885 1.8464 -0.8900 33 1 3.9785 2.1765 0.0890 34 1 3.8515 0.5682 0.8409 35 1 5.7923 3.8105 -1.1346 36 1 5.5930 0.4687 -3.2702 37 1 6.5005 -0.5522 -5.3138 38 1 6.1695 -2.9496 -5.7504 39 1 5.0078 -4.6139 -6.2499 40 1 6.5298 -4.9790 -5.4023 41 1 4.0287 -3.3419 -2.0744 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457208222.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:45 Heat of formation + Delta-G solvation = -223.319430 kcal Electronic energy + Delta-G solvation = -30810.854091 eV Core-core repulsion = 25856.507773 eV Total energy + Delta-G solvation = -4954.346318 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.118 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -50.33791 -47.90400 -47.77158 -40.06964 -38.83889 -37.19674 -36.41951 -34.92486 -31.74779 -31.15197 -30.77498 -29.31177 -28.42443 -25.80061 -25.25313 -24.17577 -23.00460 -21.93801 -21.30693 -19.62598 -18.87414 -18.85796 -18.05335 -17.91377 -16.77444 -16.09174 -15.91159 -15.69156 -15.39233 -15.25621 -14.92475 -14.72885 -14.60485 -14.47177 -14.25585 -14.24470 -14.15612 -13.95426 -13.95307 -13.40503 -13.28768 -12.99576 -12.78394 -12.44659 -12.02201 -11.90555 -11.79320 -11.58249 -11.17891 -11.15013 -11.07034 -10.94308 -10.65236 -10.54554 -10.31522 -10.22723 -9.21621 -9.00820 -8.55720 -8.40981 -7.85856 -7.55189 -6.52760 -4.21008 1.49352 1.91044 2.10964 2.95190 2.99331 3.11572 3.15009 3.49417 3.70117 3.79200 3.95309 4.15417 4.49370 4.51463 4.62810 4.68738 4.70416 4.96014 5.15010 5.19074 5.65674 5.73220 5.74556 5.90529 5.93483 6.00364 6.05840 6.10892 6.20174 6.33220 6.41593 6.56105 6.76169 7.02853 7.05327 7.10881 7.23022 7.32871 7.59225 7.80332 7.87705 8.26130 8.91164 9.40466 9.87343 10.46140 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.012739 B = 0.003034 C = 0.002637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2197.414750 B = 9226.973197 C =10614.736215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.370 6.370 3 C 0.051 3.949 4 C 0.113 3.887 5 N -0.428 5.428 6 C -0.335 4.335 7 H 0.096 0.904 8 C 0.041 3.959 9 N -0.854 5.854 10 Si 0.909 3.091 11 H -0.265 1.265 12 H -0.278 1.278 13 H -0.278 1.278 14 C 0.514 3.486 15 O -0.582 6.582 16 C -0.058 4.058 17 C -0.107 4.107 18 C -0.107 4.107 19 C -0.200 4.200 20 C 0.095 3.905 21 O -0.304 6.304 22 C 0.017 3.983 23 C 0.464 3.536 24 F -0.174 7.174 25 F -0.175 7.175 26 F -0.174 7.174 27 C -0.099 4.099 28 H 0.030 0.970 29 H 0.032 0.968 30 H 0.076 0.924 31 H 0.039 0.961 32 H 0.049 0.951 33 H 0.120 0.880 34 H 0.067 0.933 35 H 0.273 0.727 36 H 0.181 0.819 37 H 0.123 0.877 38 H 0.119 0.881 39 H 0.106 0.894 40 H 0.106 0.894 41 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.464 -7.381 -8.828 11.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.289 6.289 3 C -0.027 4.027 4 C -0.011 4.011 5 N -0.145 5.145 6 C -0.463 4.463 7 H 0.114 0.886 8 C -0.166 4.166 9 N -0.490 5.490 10 Si 0.735 3.265 11 H -0.189 1.189 12 H -0.203 1.203 13 H -0.204 1.204 14 C 0.303 3.697 15 O -0.466 6.466 16 C -0.061 4.061 17 C -0.125 4.125 18 C -0.125 4.125 19 C -0.220 4.220 20 C 0.051 3.949 21 O -0.218 6.218 22 C -0.061 4.061 23 C 0.410 3.590 24 F -0.155 7.155 25 F -0.157 7.157 26 F -0.155 7.155 27 C -0.119 4.119 28 H 0.049 0.951 29 H 0.051 0.949 30 H 0.095 0.905 31 H 0.057 0.943 32 H 0.067 0.933 33 H 0.137 0.863 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.197 0.803 37 H 0.141 0.859 38 H 0.137 0.863 39 H 0.124 0.876 40 H 0.124 0.876 41 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -0.477 -7.854 -8.114 11.302 hybrid contribution -0.273 0.800 -1.031 1.333 sum -0.750 -7.054 -9.144 11.573 Atomic orbital electron populations 1.22625 0.83300 1.01699 0.98856 1.88139 1.17581 1.28058 1.95086 1.23065 0.96322 0.84373 0.98941 1.21561 0.89763 1.02007 0.87754 1.43093 1.56630 1.04982 1.09828 1.19570 1.40243 0.98159 0.88315 0.88623 1.25430 0.94350 0.98871 0.97941 1.69826 1.28820 1.21459 1.28916 0.86139 0.78611 0.80611 0.81158 1.18893 1.20323 1.20373 1.18126 0.81084 0.83544 0.86916 1.90649 1.56517 1.62035 1.37434 1.19957 0.98239 0.92108 0.95814 1.22918 0.94013 1.03881 0.91686 1.20990 0.99674 0.93506 0.98358 1.21194 1.04984 0.95782 1.00000 1.18600 0.99550 0.80806 0.95895 1.86016 1.74621 1.23465 1.37723 1.23675 1.02499 0.88973 0.90944 1.20077 0.74834 0.90268 0.73817 1.93235 1.30128 1.96082 1.96069 1.93210 1.86030 1.88867 1.47583 1.93236 1.84598 1.83027 1.54633 1.20450 1.01532 0.94618 0.95282 0.95123 0.94919 0.90548 0.94303 0.93272 0.86282 0.91409 0.91660 0.80261 0.85889 0.86342 0.87621 0.87614 0.84709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 11.01 101.05 1.11 1.63 16 2 O -0.37 -7.92 10.07 -35.23 -0.35 -8.27 16 3 C 0.05 1.02 6.24 37.16 0.23 1.26 16 4 C 0.11 2.59 5.48 -4.04 -0.02 2.57 16 5 N -0.43 -10.36 2.47 -115.92 -0.29 -10.65 16 6 C -0.33 -7.77 5.88 -15.00 -0.09 -7.86 16 7 H 0.10 2.18 6.34 -52.48 -0.33 1.85 16 8 C 0.04 0.92 4.88 -17.45 -0.09 0.84 16 9 N -0.85 -20.40 11.37 55.50 0.63 -19.77 16 10 Si 0.91 17.58 29.59 -169.99 -5.03 12.55 16 11 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 12 H -0.28 -5.44 7.11 56.52 0.40 -5.04 16 13 H -0.28 -5.38 7.11 56.52 0.40 -4.97 16 14 C 0.51 12.80 7.28 -12.38 -0.09 12.71 16 15 O -0.58 -15.85 15.72 5.28 0.08 -15.77 16 16 C -0.06 -1.26 5.64 -104.99 -0.59 -1.85 16 17 C -0.11 -2.09 7.87 -39.15 -0.31 -2.40 16 18 C -0.11 -1.70 10.03 -39.66 -0.40 -2.09 16 19 C -0.20 -2.90 9.04 -39.34 -0.36 -3.26 16 20 C 0.09 1.57 6.68 -39.28 -0.26 1.30 16 21 O -0.30 -4.49 10.02 -19.47 -0.20 -4.69 16 22 C 0.02 0.17 4.70 37.16 0.17 0.35 16 23 C 0.46 4.94 3.32 37.16 0.12 5.07 16 24 F -0.17 -2.11 17.26 2.25 0.04 -2.07 16 25 F -0.18 -1.68 17.32 2.25 0.04 -1.64 16 26 F -0.17 -2.12 17.26 2.25 0.04 -2.08 16 27 C -0.10 -1.96 9.53 -39.01 -0.37 -2.33 16 28 H 0.03 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 33 H 0.12 2.79 5.53 -51.93 -0.29 2.50 16 34 H 0.07 1.64 7.31 -51.93 -0.38 1.26 16 35 H 0.27 6.13 8.31 -40.82 -0.34 5.79 16 36 H 0.18 3.78 4.77 -52.49 -0.25 3.53 16 37 H 0.12 1.60 8.06 -52.49 -0.42 1.18 16 38 H 0.12 1.26 6.28 -52.49 -0.33 0.93 16 39 H 0.11 0.85 7.66 -51.93 -0.40 0.45 16 40 H 0.11 0.85 7.66 -51.93 -0.40 0.46 16 41 H 0.14 2.77 7.82 -52.49 -0.41 2.36 16 LS Contribution 360.39 15.07 5.43 5.43 Total: -1.00 -28.79 360.39 -4.99 -33.78 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -4.46 Total: 7.24 kcal Atomic # 6 Polarization: 6.87 SS G_CDS: -0.93 Total: 5.94 kcal Atomic # 7 Polarization: -30.76 SS G_CDS: 0.34 Total: -30.42 kcal Atomic # 8 Polarization: -28.26 SS G_CDS: -0.47 Total: -28.73 kcal Atomic # 9 Polarization: -5.91 SS G_CDS: 0.12 Total: -5.79 kcal Atomic # 14 Polarization: 17.58 SS G_CDS: -5.03 Total: 12.55 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -28.79 -4.99 -33.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457208222.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -189.541 kcal (2) G-P(sol) polarization free energy of solvation -28.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -218.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -223.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds