Wall clock time and date at job start Wed Apr 1 2020 04:29:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42900 * 114.00065 * 2 1 4 4 C 1.52998 * 109.47058 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.47468 * 65.00131 * 4 3 2 6 6 C 1.36870 * 119.99667 * 83.83590 * 5 4 3 7 7 H 1.08004 * 120.00424 * 219.48858 * 6 5 4 8 8 C 1.39051 * 120.00372 * 39.49769 * 6 5 4 9 9 N 1.31368 * 119.99748 * 18.95009 * 8 6 5 10 10 Si 1.86794 * 120.00472 * 198.95458 * 8 6 5 11 11 H 1.48502 * 109.47046 * 359.97438 * 10 8 6 12 12 H 1.48499 * 109.47291 * 119.99641 * 10 8 6 13 13 H 1.48493 * 109.47224 * 239.99762 * 10 8 6 14 14 C 1.34768 * 120.00012 * 263.84005 * 5 4 3 15 15 O 1.21594 * 120.00085 * 4.60189 * 14 5 4 16 16 C 1.47738 * 120.00046 * 184.59466 * 14 5 4 17 17 C 1.39683 * 120.12141 * 22.54104 * 16 14 5 18 18 C 1.37942 * 119.95872 * 179.69214 * 17 16 14 19 19 C 1.38306 * 120.21096 * 0.59517 * 18 17 16 20 20 C 1.38833 * 120.25248 * 359.67796 * 19 18 17 21 21 O 1.35913 * 119.98094 * 179.97438 * 20 19 18 22 22 C 1.42895 * 117.00032 * 0.02562 * 21 20 19 23 23 C 1.52997 * 109.47193 * 179.97438 * 22 21 20 24 24 F 1.39904 * 109.47347 * 59.99665 * 23 22 21 25 25 F 1.39899 * 109.47527 * 180.02562 * 23 22 21 26 26 F 1.39903 * 109.47159 * 299.99820 * 23 22 21 27 27 C 1.38470 * 120.03438 * 0.02562 * 20 19 18 28 28 H 1.09003 * 109.47105 * 299.99115 * 1 2 3 29 29 H 1.08998 * 109.47698 * 59.99751 * 1 2 3 30 30 H 1.09007 * 109.47102 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46820 * 60.00262 * 3 2 1 32 32 H 1.09005 * 109.47222 * 300.00578 * 3 2 1 33 33 H 1.09003 * 109.46914 * 185.00351 * 4 3 2 34 34 H 1.08999 * 109.47411 * 304.99732 * 4 3 2 35 35 H 0.96996 * 119.99812 * 179.97438 * 9 8 6 36 36 H 1.08000 * 120.01954 * 359.97438 * 17 16 14 37 37 H 1.07997 * 119.89400 * 180.29285 * 18 17 16 38 38 H 1.07998 * 119.87618 * 179.69130 * 19 18 17 39 39 H 1.09005 * 109.47022 * 299.99755 * 22 21 20 40 40 H 1.09000 * 109.47487 * 59.99510 * 22 21 20 41 41 H 1.08000 * 120.10622 * 180.02562 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2527 6 6 4.1445 1.3312 -2.3739 7 1 3.8432 0.9508 -3.3387 8 6 4.7040 2.6000 -2.2708 9 7 5.4017 2.9256 -1.2064 10 14 4.4635 3.8415 -3.6456 11 1 3.6457 3.2323 -4.7251 12 1 3.7678 5.0406 -3.1135 13 1 5.7863 4.2381 -4.1913 14 6 4.2145 -0.7611 -1.3006 15 8 3.9848 -1.4557 -0.3294 16 6 4.7552 -1.3702 -2.5332 17 6 5.4502 -0.5855 -3.4563 18 6 5.9592 -1.1590 -4.6030 19 6 5.7730 -2.5073 -4.8485 20 6 5.0786 -3.2943 -3.9397 21 8 4.8985 -4.6186 -4.1868 22 6 5.4508 -5.1333 -5.4000 23 6 5.1498 -6.6298 -5.5029 24 9 3.7649 -6.8283 -5.4999 25 9 5.6910 -7.1338 -6.6905 26 9 5.7187 -7.2960 -4.4122 27 6 4.5686 -2.7306 -2.7824 28 1 -0.3633 0.5137 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 1.6886 1.8463 0.8900 32 1 1.6885 1.8464 -0.8900 33 1 3.9785 2.1765 0.0890 34 1 3.8515 0.5682 0.8409 35 1 5.7923 3.8105 -1.1346 36 1 5.5930 0.4687 -3.2702 37 1 6.5005 -0.5522 -5.3138 38 1 6.1695 -2.9496 -5.7504 39 1 5.0078 -4.6139 -6.2499 40 1 6.5298 -4.9790 -5.4023 41 1 4.0287 -3.3419 -2.0744 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457208222.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:45 Heat of formation + Delta-G solvation = -240.547224 kcal Electronic energy + Delta-G solvation = -30811.601144 eV Core-core repulsion = 25856.507773 eV Total energy + Delta-G solvation = -4955.093371 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.118 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -51.18467 -48.72366 -48.67185 -41.41163 -40.43398 -38.69932 -37.89364 -36.76023 -33.54901 -32.28036 -32.23917 -30.65494 -29.79337 -27.25664 -26.98343 -25.34533 -24.31834 -23.26844 -22.83772 -21.20513 -20.12012 -19.71455 -19.30625 -18.84695 -18.32471 -17.58841 -17.25878 -16.96958 -16.87393 -16.69396 -16.31682 -16.15083 -15.85758 -15.68561 -15.53778 -15.49357 -15.10458 -14.98596 -14.83627 -14.81836 -14.74749 -14.43338 -14.16805 -13.64403 -13.44219 -13.39879 -13.25090 -12.93973 -12.75372 -12.68328 -12.52605 -12.27552 -12.09464 -11.97076 -11.88638 -11.87294 -10.97966 -10.56353 -10.33335 -9.88536 -9.41807 -9.16249 -8.28049 -6.02468 0.07168 0.53956 1.20834 1.46535 1.54070 1.65658 2.00427 2.16537 2.33465 2.66893 2.87797 2.92346 2.93227 3.03629 3.26552 3.34546 3.81490 3.98414 4.02290 4.02691 4.26037 4.34354 4.38342 4.44925 4.52115 4.55703 4.59667 4.62527 4.74032 4.78276 4.97975 5.05762 5.25012 5.25867 5.46873 5.62359 5.72669 5.82661 6.00170 6.30015 6.37758 6.48521 7.11849 7.56416 8.05093 8.73025 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.012739 B = 0.003034 C = 0.002637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2197.414750 B = 9226.973197 C =10614.736215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.408 6.408 3 C 0.060 3.940 4 C 0.110 3.890 5 N -0.432 5.432 6 C -0.343 4.343 7 H 0.098 0.902 8 C 0.011 3.989 9 N -0.886 5.886 10 Si 0.977 3.023 11 H -0.258 1.258 12 H -0.279 1.279 13 H -0.273 1.273 14 C 0.493 3.507 15 O -0.625 6.625 16 C -0.088 4.088 17 C -0.122 4.122 18 C -0.093 4.093 19 C -0.177 4.177 20 C 0.107 3.893 21 O -0.322 6.322 22 C 0.008 3.992 23 C 0.466 3.534 24 F -0.186 7.186 25 F -0.166 7.166 26 F -0.186 7.186 27 C -0.124 4.124 28 H 0.054 0.946 29 H 0.043 0.957 30 H 0.086 0.914 31 H 0.067 0.933 32 H 0.048 0.952 33 H 0.114 0.886 34 H 0.042 0.958 35 H 0.277 0.723 36 H 0.161 0.839 37 H 0.163 0.837 38 H 0.174 0.826 39 H 0.138 0.862 40 H 0.137 0.863 41 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.075 -7.097 -12.437 14.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.328 6.328 3 C -0.017 4.017 4 C -0.013 4.013 5 N -0.149 5.149 6 C -0.471 4.471 7 H 0.116 0.884 8 C -0.194 4.194 9 N -0.523 5.523 10 Si 0.800 3.200 11 H -0.181 1.181 12 H -0.205 1.205 13 H -0.198 1.198 14 C 0.284 3.716 15 O -0.513 6.513 16 C -0.091 4.091 17 C -0.140 4.140 18 C -0.111 4.111 19 C -0.196 4.196 20 C 0.064 3.936 21 O -0.237 6.237 22 C -0.068 4.068 23 C 0.412 3.588 24 F -0.167 7.167 25 F -0.147 7.147 26 F -0.168 7.168 27 C -0.144 4.144 28 H 0.073 0.927 29 H 0.062 0.938 30 H 0.104 0.896 31 H 0.085 0.915 32 H 0.067 0.933 33 H 0.131 0.869 34 H 0.060 0.940 35 H 0.087 0.913 36 H 0.178 0.822 37 H 0.180 0.820 38 H 0.191 0.809 39 H 0.156 0.844 40 H 0.155 0.845 41 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 0.054 -7.571 -11.739 13.969 hybrid contribution -0.412 0.570 0.042 0.704 sum -0.358 -7.001 -11.697 13.637 Atomic orbital electron populations 1.22853 0.80598 1.02987 1.00510 1.88090 1.20663 1.28604 1.95397 1.22905 0.94231 0.84436 1.00142 1.21536 0.92101 1.00798 0.86886 1.43323 1.56081 1.05119 1.10342 1.19733 1.40780 0.98439 0.88108 0.88419 1.26139 0.93411 0.99850 0.99953 1.69918 1.29575 1.22024 1.30766 0.85118 0.78563 0.77877 0.78471 1.18142 1.20494 1.19832 1.18829 0.80976 0.83817 0.87948 1.90581 1.58603 1.62935 1.39225 1.19767 1.00598 0.93168 0.95592 1.22694 0.95281 1.02956 0.93102 1.21368 0.98188 0.94540 0.97001 1.21686 1.02423 0.94826 1.00640 1.18490 0.98495 0.81810 0.94847 1.85977 1.75084 1.22409 1.40240 1.24115 1.04496 0.88280 0.89952 1.20183 0.74223 0.90662 0.73711 1.93217 1.31195 1.96194 1.96118 1.93232 1.85799 1.88809 1.46905 1.93217 1.84719 1.83409 1.55415 1.20301 1.03164 0.93988 0.96903 0.92736 0.93832 0.89567 0.91522 0.93330 0.86898 0.93972 0.91343 0.82181 0.81983 0.80919 0.84439 0.84522 0.87239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.85 11.01 113.37 1.25 2.10 16 2 O -0.41 -18.01 10.07 -148.98 -1.50 -19.51 16 3 C 0.06 2.50 6.24 71.98 0.45 2.95 16 4 C 0.11 5.37 5.48 86.38 0.47 5.84 16 5 N -0.43 -22.03 2.47 -638.93 -1.58 -23.61 16 6 C -0.34 -16.29 5.88 84.10 0.49 -15.80 16 7 H 0.10 4.52 6.34 -2.91 -0.02 4.51 16 8 C 0.01 0.48 4.88 84.96 0.41 0.89 16 9 N -0.89 -43.14 11.37 21.68 0.25 -42.89 16 10 Si 0.98 35.39 29.59 68.60 2.03 37.42 16 11 H -0.26 -8.98 7.11 99.48 0.71 -8.27 16 12 H -0.28 -10.16 7.11 99.48 0.71 -9.46 16 13 H -0.27 -9.64 7.11 99.48 0.71 -8.93 16 14 C 0.49 26.23 7.28 86.76 0.63 26.87 16 15 O -0.63 -36.85 15.72 -4.01 -0.06 -36.91 16 16 C -0.09 -3.99 5.64 -20.10 -0.11 -4.10 16 17 C -0.12 -4.73 7.87 22.55 0.18 -4.55 16 18 C -0.09 -2.61 10.03 22.22 0.22 -2.39 16 19 C -0.18 -4.30 9.04 22.43 0.20 -4.10 16 20 C 0.11 3.35 6.68 22.47 0.15 3.50 16 21 O -0.32 -8.82 10.02 -92.57 -0.93 -9.75 16 22 C 0.01 0.13 4.70 71.98 0.34 0.46 16 23 C 0.47 8.72 3.32 71.98 0.24 8.96 16 24 F -0.19 -4.21 17.26 44.97 0.78 -3.43 16 25 F -0.17 -2.67 17.32 44.97 0.78 -1.89 16 26 F -0.19 -4.25 17.26 44.97 0.78 -3.47 16 27 C -0.12 -5.07 9.53 22.64 0.22 -4.85 16 28 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.09 2.52 8.14 -2.38 -0.02 2.50 16 31 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 32 H 0.05 1.99 8.14 -2.38 -0.02 1.97 16 33 H 0.11 5.56 5.53 -2.39 -0.01 5.55 16 34 H 0.04 2.20 7.31 -2.39 -0.02 2.19 16 35 H 0.28 12.55 8.31 -92.71 -0.77 11.78 16 36 H 0.16 6.82 4.77 -2.91 -0.01 6.80 16 37 H 0.16 3.30 8.06 -2.91 -0.02 3.28 16 38 H 0.17 2.34 6.28 -2.91 -0.02 2.33 16 39 H 0.14 1.41 7.66 -2.38 -0.02 1.39 16 40 H 0.14 1.43 7.66 -2.39 -0.02 1.41 16 41 H 0.11 4.90 7.82 -2.91 -0.02 4.87 16 Total: -1.00 -68.11 360.39 6.77 -61.33 By element: Atomic # 1 Polarization: 25.84 SS G_CDS: 1.09 Total: 26.93 kcal Atomic # 6 Polarization: 10.64 SS G_CDS: 5.14 Total: 15.79 kcal Atomic # 7 Polarization: -65.17 SS G_CDS: -1.33 Total: -66.50 kcal Atomic # 8 Polarization: -63.68 SS G_CDS: -2.49 Total: -66.17 kcal Atomic # 9 Polarization: -11.13 SS G_CDS: 2.33 Total: -8.80 kcal Atomic # 14 Polarization: 35.39 SS G_CDS: 2.03 Total: 37.42 kcal Total: -68.11 6.77 -61.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457208222.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -179.214 kcal (2) G-P(sol) polarization free energy of solvation -68.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -247.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -240.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds