Wall clock time and date at job start Wed Apr 1 2020 04:00:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46506 * 109.46916 * 2 1 4 4 C 1.36850 * 119.99908 * 96.62954 * 3 2 1 5 5 H 1.08000 * 119.99866 * 219.03523 * 4 3 2 6 6 C 1.39013 * 120.00191 * 39.04193 * 4 3 2 7 7 N 1.31394 * 120.00297 * 18.03882 * 6 4 3 8 8 Si 1.86800 * 119.99941 * 198.04185 * 6 4 3 9 9 H 1.48494 * 109.47204 * 89.99981 * 8 6 4 10 10 H 1.48501 * 109.47135 * 209.99815 * 8 6 4 11 11 H 1.48501 * 109.47255 * 329.99731 * 8 6 4 12 12 C 1.34777 * 119.99716 * 276.62732 * 3 2 1 13 13 O 1.21755 * 119.99743 * 178.17614 * 12 3 2 14 14 C 1.46482 * 120.00095 * 358.44988 * 12 3 2 15 15 S 1.75542 * 124.75135 * 8.10489 * 14 12 3 16 16 C 1.75955 * 91.57809 * 179.97438 * 15 14 12 17 17 N 1.34410 * 131.22425 * 180.09438 * 16 15 14 18 18 C 1.30655 * 123.10975 * 179.97438 * 17 16 15 19 19 N 1.35722 * 121.82435 * 0.18448 * 18 17 16 20 20 C 1.35368 * 120.22873 * 359.72320 * 19 18 17 21 21 O 1.21826 * 120.69402 * 180.16179 * 20 19 18 22 22 C 1.39882 * 109.43257 * 0.05934 * 16 15 14 23 23 C 1.34319 * 124.75123 * 187.80277 * 14 12 3 24 24 C 1.50703 * 122.25424 * 359.97438 * 23 14 12 25 25 C 1.47302 * 110.98665 * 179.66061 * 19 18 17 26 26 C 1.54252 * 105.59304 * 17.55971 * 25 19 18 27 27 C 1.51965 * 128.57205 * 180.29670 * 18 17 16 28 28 H 1.09004 * 109.46508 * 299.99985 * 1 2 3 29 29 H 1.08993 * 109.47328 * 59.99710 * 1 2 3 30 30 H 1.09000 * 109.46559 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47175 * 239.99846 * 2 1 3 32 32 H 1.08995 * 109.47431 * 119.99758 * 2 1 3 33 33 H 0.96998 * 120.00395 * 179.97438 * 7 6 4 34 34 H 1.08997 * 109.46934 * 90.02471 * 24 23 14 35 35 H 1.08998 * 109.47189 * 210.02390 * 24 23 14 36 36 H 1.09004 * 109.47156 * 330.02769 * 24 23 14 37 37 H 1.08993 * 110.22279 * 136.59552 * 25 19 18 38 38 H 1.09004 * 110.21982 * 258.53008 * 25 19 18 39 39 H 1.09005 * 110.96199 * 91.79798 * 26 25 19 40 40 H 1.08995 * 110.96627 * 215.53808 * 26 25 19 41 41 H 1.09001 * 110.44934 * 281.86528 * 27 18 17 42 42 H 1.08997 * 110.45405 * 44.41945 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3754 1.9808 1.1772 5 1 2.1348 3.0196 1.3489 6 6 3.0479 1.2528 2.1520 7 7 3.6503 0.1292 1.8343 8 14 3.0951 1.8720 3.9138 9 1 1.9335 1.3271 4.6613 10 1 4.3544 1.4253 4.5619 11 1 3.0352 3.3558 3.9188 12 6 2.1159 2.0615 -1.1594 13 8 2.4901 3.2201 -1.1558 14 6 1.7660 1.4087 -2.4232 15 16 1.0185 -0.1738 -2.5587 16 6 1.0055 -0.0711 -4.3152 17 7 0.5670 -0.9320 -5.2496 18 6 0.6358 -0.6898 -6.5317 19 7 1.1656 0.4626 -7.0149 20 6 1.6373 1.4047 -6.1651 21 8 2.1120 2.4434 -6.5895 22 6 1.5650 1.1473 -4.7143 23 6 1.9670 1.9397 -3.6406 24 6 2.5896 3.2986 -3.8325 25 6 1.1309 0.4824 -8.4874 26 6 0.1110 -0.6015 -8.8927 27 6 0.1765 -1.5636 -7.6870 28 1 -0.3632 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3632 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8899 33 1 4.1198 -0.3786 2.5143 34 1 3.6715 3.1943 -3.9137 35 1 2.1989 3.7519 -4.7435 36 1 2.3487 3.9325 -2.9790 37 1 0.8042 1.4594 -8.8434 38 1 2.1150 0.2434 -8.8906 39 1 -0.8875 -0.1771 -8.9992 40 1 0.4193 -1.1037 -9.8096 41 1 0.8982 -2.3590 -7.8732 42 1 -0.8082 -1.9824 -7.4798 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000518640424.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:16 Heat of formation + Delta-G solvation = 3.966664 kcal Electronic energy + Delta-G solvation = -28445.450351 eV Core-core repulsion = 24517.862260 eV Total energy + Delta-G solvation = -3927.588091 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.73867 -39.02378 -38.04908 -37.33299 -35.45835 -34.57391 -32.40459 -32.30097 -29.99522 -29.47663 -28.02951 -27.81512 -25.29138 -23.88061 -23.42937 -22.59268 -21.89191 -20.84364 -18.95487 -18.01662 -17.50206 -17.06012 -16.91148 -16.66869 -15.89055 -15.23095 -15.08879 -14.89170 -14.30727 -14.12114 -14.01484 -13.81689 -13.64719 -13.52053 -13.23134 -12.93769 -12.82544 -12.68701 -12.23142 -11.99528 -11.92370 -11.87519 -11.80300 -11.60608 -11.21045 -11.15245 -11.01647 -10.59964 -10.49776 -10.42199 -10.32148 -10.03823 -9.66728 -9.59370 -9.10146 -8.47852 -8.06093 -7.74020 -7.41100 -6.48809 -4.11712 0.30040 1.55978 1.79486 2.15565 2.20418 2.38917 3.12266 3.19974 3.24758 3.47903 3.57929 3.90322 4.00057 4.20684 4.20881 4.35662 4.57208 4.76627 4.90614 4.99874 5.03373 5.14363 5.15965 5.24293 5.33226 5.47406 5.47869 5.64704 5.87020 5.93012 6.01385 6.10961 6.14667 6.28671 6.32092 6.38869 6.52941 6.68442 6.88313 7.00211 7.09132 7.44446 7.78655 7.83798 8.11147 8.33782 9.01363 9.17633 9.81303 10.55421 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.023742 B = 0.003172 C = 0.002894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.081766 B = 8824.043326 C = 9672.473400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.090 3.910 3 N -0.426 5.426 4 C -0.302 4.302 5 H 0.098 0.902 6 C 0.037 3.963 7 N -0.864 5.864 8 Si 0.926 3.074 9 H -0.275 1.275 10 H -0.282 1.282 11 H -0.266 1.266 12 C 0.524 3.476 13 O -0.558 6.558 14 C -0.235 4.235 15 S 0.277 5.723 16 C 0.019 3.981 17 N -0.495 5.495 18 C 0.374 3.626 19 N -0.548 5.548 20 C 0.567 3.433 21 O -0.519 6.519 22 C -0.225 4.225 23 C 0.006 3.994 24 C -0.109 4.109 25 C 0.095 3.905 26 C -0.131 4.131 27 C -0.069 4.069 28 H 0.068 0.932 29 H 0.054 0.946 30 H 0.063 0.937 31 H 0.058 0.942 32 H 0.126 0.874 33 H 0.272 0.728 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.103 0.897 37 H 0.094 0.906 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.104 0.896 41 H 0.110 0.890 42 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.699 -8.498 -17.334 21.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.037 4.037 3 N -0.144 5.144 4 C -0.430 4.430 5 H 0.115 0.885 6 C -0.169 4.169 7 N -0.501 5.501 8 Si 0.752 3.248 9 H -0.201 1.201 10 H -0.208 1.208 11 H -0.191 1.191 12 C 0.313 3.687 13 O -0.443 6.443 14 C -0.355 4.355 15 S 0.548 5.452 16 C -0.212 4.212 17 N -0.216 5.216 18 C 0.104 3.896 19 N -0.272 5.272 20 C 0.362 3.638 21 O -0.395 6.395 22 C -0.242 4.242 23 C -0.007 4.007 24 C -0.168 4.168 25 C -0.027 4.027 26 C -0.169 4.169 27 C -0.108 4.108 28 H 0.087 0.913 29 H 0.073 0.927 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.143 0.857 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.121 0.879 37 H 0.112 0.888 38 H 0.107 0.893 39 H 0.107 0.893 40 H 0.122 0.878 41 H 0.128 0.872 42 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -8.787 -9.020 -15.903 20.285 hybrid contribution 0.989 1.629 -0.533 1.979 sum -7.798 -7.390 -16.436 19.636 Atomic orbital electron populations 1.22478 0.97141 1.01769 1.02356 1.21847 0.92583 0.86166 1.03140 1.43389 1.54630 1.11241 1.05144 1.19517 1.35063 0.98096 0.90364 0.88456 1.25513 0.93937 0.96416 1.00991 1.69885 1.29957 1.15762 1.34511 0.85933 0.77734 0.79688 0.81490 1.20089 1.20801 1.19079 1.17021 0.82784 0.87506 0.81418 1.90597 1.51756 1.16692 1.85211 1.24143 1.12872 0.99650 0.98854 1.85311 1.56378 1.14851 0.88629 1.25493 0.99535 0.92641 1.03536 1.66707 1.24701 1.32559 0.97663 1.23937 0.89030 0.85394 0.91286 1.47294 1.52873 1.17878 1.09203 1.17975 0.78034 0.82499 0.85328 1.90834 1.45118 1.25040 1.78487 1.20259 1.13566 0.97979 0.92422 1.18262 0.96347 0.97310 0.88734 1.20898 0.99753 0.92206 1.03914 1.22436 1.01277 1.01847 0.77155 1.22669 1.00260 0.95571 0.98393 1.21320 1.04473 0.96742 0.88257 0.91332 0.92688 0.91811 0.92569 0.85681 0.91763 0.91513 0.91497 0.87863 0.88754 0.89302 0.89251 0.87776 0.87158 0.87113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.12 8.92 37.16 0.33 -2.79 16 2 C 0.09 1.91 5.16 -4.04 -0.02 1.89 16 3 N -0.43 -10.75 2.52 -116.36 -0.29 -11.05 16 4 C -0.30 -8.12 8.89 -15.02 -0.13 -8.25 16 5 H 0.10 2.71 7.76 -52.49 -0.41 2.30 16 6 C 0.04 0.94 4.96 -17.45 -0.09 0.85 16 7 N -0.86 -22.45 11.46 55.50 0.64 -21.81 16 8 Si 0.93 19.85 29.59 -169.99 -5.03 14.82 16 9 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 10 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 11 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 12 C 0.52 13.38 7.50 -12.94 -0.10 13.28 16 13 O -0.56 -15.64 13.80 5.14 0.07 -15.57 16 14 C -0.23 -5.16 6.04 -37.65 -0.23 -5.39 16 15 S 0.28 4.99 15.35 -107.50 -1.65 3.34 16 16 C 0.02 0.34 7.74 -15.81 -0.12 0.21 16 17 N -0.50 -7.63 10.33 -8.20 -0.08 -7.72 16 18 C 0.37 4.53 7.97 -154.04 -1.23 3.31 16 19 N -0.55 -7.27 3.09 -112.01 -0.35 -7.62 16 20 C 0.57 10.19 7.85 -12.21 -0.10 10.10 16 21 O -0.52 -10.35 15.63 5.08 0.08 -10.27 16 22 C -0.22 -4.39 6.03 -105.08 -0.63 -5.03 16 23 C 0.01 0.13 5.85 -105.58 -0.62 -0.49 16 24 C -0.11 -2.31 9.12 36.01 0.33 -1.98 16 25 C 0.09 0.75 7.23 -2.95 -0.02 0.73 16 26 C -0.13 -0.52 7.15 -25.34 -0.18 -0.70 16 27 C -0.07 -0.40 6.85 -26.53 -0.18 -0.58 16 28 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 29 H 0.05 0.95 6.01 -42.98 -0.26 0.69 16 30 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.06 1.17 4.40 -21.40 -0.09 1.07 16 32 H 0.13 2.87 5.60 -51.93 -0.29 2.58 16 33 H 0.27 6.62 8.31 -40.82 -0.34 6.28 16 34 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 35 H 0.07 1.35 6.53 -51.93 -0.34 1.01 16 36 H 0.10 2.35 5.58 -51.93 -0.29 2.06 16 37 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 40 H 0.10 0.13 8.14 -51.93 -0.42 -0.29 16 41 H 0.11 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.11 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 347.84 15.07 5.24 5.24 Total: -1.00 -34.34 347.84 -8.98 -43.32 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: -4.62 Total: 2.15 kcal Atomic # 6 Polarization: 8.15 SS G_CDS: -2.99 Total: 5.16 kcal Atomic # 7 Polarization: -48.10 SS G_CDS: -0.09 Total: -48.19 kcal Atomic # 8 Polarization: -25.99 SS G_CDS: 0.15 Total: -25.84 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.03 Total: 14.82 kcal Atomic # 16 Polarization: 4.99 SS G_CDS: -1.65 Total: 3.34 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -34.34 -8.98 -43.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000518640424.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.290 kcal (2) G-P(sol) polarization free energy of solvation -34.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.323 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds