Wall clock time and date at job start Wed Apr 1 2020 04:00:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46506 * 109.46916 * 2 1 4 4 C 1.36850 * 119.99908 * 96.62954 * 3 2 1 5 5 H 1.08000 * 119.99866 * 219.03523 * 4 3 2 6 6 C 1.39013 * 120.00191 * 39.04193 * 4 3 2 7 7 N 1.31394 * 120.00297 * 18.03882 * 6 4 3 8 8 Si 1.86800 * 119.99941 * 198.04185 * 6 4 3 9 9 H 1.48494 * 109.47204 * 89.99981 * 8 6 4 10 10 H 1.48501 * 109.47135 * 209.99815 * 8 6 4 11 11 H 1.48501 * 109.47255 * 329.99731 * 8 6 4 12 12 C 1.34777 * 119.99716 * 276.62732 * 3 2 1 13 13 O 1.21755 * 119.99743 * 178.17614 * 12 3 2 14 14 C 1.46482 * 120.00095 * 358.44988 * 12 3 2 15 15 S 1.75542 * 124.75135 * 8.10489 * 14 12 3 16 16 C 1.75955 * 91.57809 * 179.97438 * 15 14 12 17 17 N 1.34410 * 131.22425 * 180.09438 * 16 15 14 18 18 C 1.30655 * 123.10975 * 179.97438 * 17 16 15 19 19 N 1.35722 * 121.82435 * 0.18448 * 18 17 16 20 20 C 1.35368 * 120.22873 * 359.72320 * 19 18 17 21 21 O 1.21826 * 120.69402 * 180.16179 * 20 19 18 22 22 C 1.39882 * 109.43257 * 0.05934 * 16 15 14 23 23 C 1.34319 * 124.75123 * 187.80277 * 14 12 3 24 24 C 1.50703 * 122.25424 * 359.97438 * 23 14 12 25 25 C 1.47302 * 110.98665 * 179.66061 * 19 18 17 26 26 C 1.54252 * 105.59304 * 17.55971 * 25 19 18 27 27 C 1.51965 * 128.57205 * 180.29670 * 18 17 16 28 28 H 1.09004 * 109.46508 * 299.99985 * 1 2 3 29 29 H 1.08993 * 109.47328 * 59.99710 * 1 2 3 30 30 H 1.09000 * 109.46559 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47175 * 239.99846 * 2 1 3 32 32 H 1.08995 * 109.47431 * 119.99758 * 2 1 3 33 33 H 0.96998 * 120.00395 * 179.97438 * 7 6 4 34 34 H 1.08997 * 109.46934 * 90.02471 * 24 23 14 35 35 H 1.08998 * 109.47189 * 210.02390 * 24 23 14 36 36 H 1.09004 * 109.47156 * 330.02769 * 24 23 14 37 37 H 1.08993 * 110.22279 * 136.59552 * 25 19 18 38 38 H 1.09004 * 110.21982 * 258.53008 * 25 19 18 39 39 H 1.09005 * 110.96199 * 91.79798 * 26 25 19 40 40 H 1.08995 * 110.96627 * 215.53808 * 26 25 19 41 41 H 1.09001 * 110.44934 * 281.86528 * 27 18 17 42 42 H 1.08997 * 110.45405 * 44.41945 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3754 1.9808 1.1772 5 1 2.1348 3.0196 1.3489 6 6 3.0479 1.2528 2.1520 7 7 3.6503 0.1292 1.8343 8 14 3.0951 1.8720 3.9138 9 1 1.9335 1.3271 4.6613 10 1 4.3544 1.4253 4.5619 11 1 3.0352 3.3558 3.9188 12 6 2.1159 2.0615 -1.1594 13 8 2.4901 3.2201 -1.1558 14 6 1.7660 1.4087 -2.4232 15 16 1.0185 -0.1738 -2.5587 16 6 1.0055 -0.0711 -4.3152 17 7 0.5670 -0.9320 -5.2496 18 6 0.6358 -0.6898 -6.5317 19 7 1.1656 0.4626 -7.0149 20 6 1.6373 1.4047 -6.1651 21 8 2.1120 2.4434 -6.5895 22 6 1.5650 1.1473 -4.7143 23 6 1.9670 1.9397 -3.6406 24 6 2.5896 3.2986 -3.8325 25 6 1.1309 0.4824 -8.4874 26 6 0.1110 -0.6015 -8.8927 27 6 0.1765 -1.5636 -7.6870 28 1 -0.3632 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3632 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8899 33 1 4.1198 -0.3786 2.5143 34 1 3.6715 3.1943 -3.9137 35 1 2.1989 3.7519 -4.7435 36 1 2.3487 3.9325 -2.9790 37 1 0.8042 1.4594 -8.8434 38 1 2.1150 0.2434 -8.8906 39 1 -0.8875 -0.1771 -8.9992 40 1 0.4193 -1.1037 -9.8096 41 1 0.8982 -2.3590 -7.8732 42 1 -0.8082 -1.9824 -7.4798 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000518640424.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:15 Heat of formation + Delta-G solvation = -18.500500 kcal Electronic energy + Delta-G solvation = -28446.424600 eV Core-core repulsion = 24517.862260 eV Total energy + Delta-G solvation = -3928.562340 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.89065 -40.80811 -39.32496 -38.75177 -37.12816 -36.02293 -34.20945 -33.32196 -31.61426 -30.84984 -29.66582 -28.84441 -27.04859 -25.21355 -24.64644 -24.19898 -22.64444 -22.36499 -20.39061 -19.58859 -18.91152 -18.75562 -18.20116 -17.95560 -17.12854 -16.98968 -16.61978 -16.08617 -15.96265 -15.59981 -15.32321 -15.13011 -14.88388 -14.83625 -14.69871 -14.34073 -13.86244 -13.82701 -13.70884 -13.61854 -13.48364 -13.20615 -13.04887 -12.86345 -12.75175 -12.48261 -12.44548 -12.17138 -12.12521 -11.96498 -11.62174 -11.44233 -11.10080 -10.90491 -10.82220 -10.42485 -9.62483 -9.55555 -8.90288 -8.42576 -6.16091 -1.02298 0.12036 0.31352 0.68439 0.79040 1.26923 1.41439 1.42444 1.54648 2.16179 2.24746 2.38536 2.62472 2.82751 2.96922 3.15631 3.42803 3.69346 3.72862 3.83506 3.97699 4.04254 4.20026 4.35926 4.38010 4.40932 4.57163 4.57871 4.61359 4.62900 4.68393 4.85239 4.87376 5.05763 5.11006 5.12777 5.14240 5.20702 5.28382 5.36624 5.40671 5.47262 6.13782 6.41613 6.51362 6.59243 7.04670 7.24967 7.88283 8.61409 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.023742 B = 0.003172 C = 0.002894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.081766 B = 8824.043326 C = 9672.473400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.088 3.912 3 N -0.438 5.438 4 C -0.340 4.340 5 H 0.071 0.929 6 C 0.007 3.993 7 N -0.886 5.886 8 Si 0.991 3.009 9 H -0.257 1.257 10 H -0.275 1.275 11 H -0.275 1.275 12 C 0.513 3.487 13 O -0.604 6.604 14 C -0.282 4.282 15 S 0.325 5.675 16 C 0.047 3.953 17 N -0.522 5.522 18 C 0.396 3.604 19 N -0.548 5.548 20 C 0.561 3.439 21 O -0.550 6.550 22 C -0.273 4.273 23 C 0.007 3.993 24 C -0.100 4.100 25 C 0.078 3.922 26 C -0.110 4.110 27 C -0.065 4.065 28 H 0.061 0.939 29 H 0.055 0.945 30 H 0.103 0.897 31 H 0.064 0.936 32 H 0.110 0.890 33 H 0.279 0.721 34 H 0.061 0.939 35 H 0.071 0.929 36 H 0.081 0.919 37 H 0.092 0.908 38 H 0.104 0.896 39 H 0.100 0.900 40 H 0.146 0.854 41 H 0.142 0.858 42 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.616 -12.123 -20.279 25.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.038 4.038 3 N -0.155 5.155 4 C -0.468 4.468 5 H 0.089 0.911 6 C -0.197 4.197 7 N -0.523 5.523 8 Si 0.813 3.187 9 H -0.181 1.181 10 H -0.200 1.200 11 H -0.200 1.200 12 C 0.303 3.697 13 O -0.491 6.491 14 C -0.401 4.401 15 S 0.595 5.405 16 C -0.186 4.186 17 N -0.245 5.245 18 C 0.128 3.872 19 N -0.269 5.269 20 C 0.356 3.644 21 O -0.428 6.428 22 C -0.289 4.289 23 C -0.007 4.007 24 C -0.158 4.158 25 C -0.041 4.041 26 C -0.148 4.148 27 C -0.104 4.104 28 H 0.080 0.920 29 H 0.074 0.926 30 H 0.122 0.878 31 H 0.081 0.919 32 H 0.128 0.872 33 H 0.089 0.911 34 H 0.079 0.921 35 H 0.090 0.910 36 H 0.099 0.901 37 H 0.110 0.890 38 H 0.122 0.878 39 H 0.119 0.881 40 H 0.164 0.836 41 H 0.160 0.840 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -10.731 -12.697 -18.916 25.183 hybrid contribution 1.542 2.634 -0.008 3.052 sum -9.189 -10.063 -18.924 23.320 Atomic orbital electron populations 1.22421 0.94147 1.04202 1.02064 1.21973 0.95007 0.83980 1.02813 1.43599 1.54782 1.12530 1.04615 1.19458 1.37459 0.97754 0.92082 0.91084 1.26256 0.92779 0.96402 1.04264 1.69950 1.30014 1.16463 1.35833 0.84983 0.78463 0.78511 0.76706 1.18140 1.20028 1.20021 1.17531 0.82194 0.87251 0.82741 1.90537 1.53681 1.18608 1.86319 1.23729 1.16468 1.02639 0.97280 1.84752 1.55579 1.11543 0.88613 1.25660 0.96675 0.92010 1.04235 1.66890 1.26823 1.32061 0.98695 1.25504 0.84879 0.85224 0.91632 1.47540 1.51031 1.16963 1.11338 1.17894 0.78126 0.83011 0.85374 1.90801 1.46564 1.26461 1.78983 1.20301 1.16344 0.98943 0.93310 1.18411 0.95533 0.97121 0.89587 1.20725 0.99435 0.92669 1.02976 1.22999 1.03850 1.03757 0.73534 1.22796 0.99602 0.93441 0.98952 1.21807 1.06393 0.96570 0.85597 0.92023 0.92605 0.87841 0.91894 0.87248 0.91133 0.92083 0.90985 0.90059 0.88965 0.87755 0.88095 0.83560 0.84018 0.84458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.89 8.92 71.98 0.64 -5.24 16 2 C 0.09 3.86 5.16 86.38 0.45 4.30 16 3 N -0.44 -23.40 2.52 -640.26 -1.61 -25.02 16 4 C -0.34 -19.36 8.89 84.10 0.75 -18.61 16 5 H 0.07 4.30 7.76 -2.91 -0.02 4.28 16 6 C 0.01 0.34 4.96 84.94 0.42 0.77 16 7 N -0.89 -47.09 11.46 21.68 0.25 -46.84 16 8 Si 0.99 41.67 29.59 68.60 2.03 43.70 16 9 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 10 H -0.28 -11.18 7.11 99.48 0.71 -10.47 16 11 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 12 C 0.51 28.12 7.50 86.39 0.65 28.77 16 13 O -0.60 -36.91 13.80 -4.53 -0.06 -36.98 16 14 C -0.28 -13.07 6.04 23.52 0.14 -12.92 16 15 S 0.33 11.66 15.35 -56.49 -0.87 10.79 16 16 C 0.05 1.66 7.74 84.70 0.66 2.32 16 17 N -0.52 -14.61 10.33 -179.85 -1.86 -16.47 16 18 C 0.40 8.04 7.97 138.27 1.10 9.15 16 19 N -0.55 -13.06 3.09 -626.11 -1.94 -15.00 16 20 C 0.56 20.03 7.85 86.60 0.68 20.71 16 21 O -0.55 -22.31 15.63 -4.75 -0.07 -22.38 16 22 C -0.27 -10.83 6.03 -20.16 -0.12 -10.95 16 23 C 0.01 0.32 5.85 -20.49 -0.12 0.20 16 24 C -0.10 -4.57 9.12 71.24 0.65 -3.92 16 25 C 0.08 0.92 7.23 86.65 0.63 1.55 16 26 C -0.11 -0.16 7.15 31.49 0.23 0.07 16 27 C -0.06 -0.33 6.85 30.73 0.21 -0.12 16 28 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 29 H 0.06 1.93 6.01 -8.08 -0.05 1.88 16 30 H 0.10 2.73 8.14 -2.39 -0.02 2.71 16 31 H 0.06 2.65 4.40 -21.80 -0.10 2.56 16 32 H 0.11 5.14 5.60 -2.39 -0.01 5.12 16 33 H 0.28 13.68 8.31 -92.71 -0.77 12.91 16 34 H 0.06 2.78 8.14 -2.39 -0.02 2.76 16 35 H 0.07 3.13 6.53 -2.39 -0.02 3.12 16 36 H 0.08 4.08 5.58 -2.38 -0.01 4.07 16 37 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.10 0.97 8.14 -2.39 -0.02 0.96 16 39 H 0.10 0.02 8.14 -2.38 -0.02 0.00 16 40 H 0.15 -0.82 8.14 -2.39 -0.02 -0.84 16 41 H 0.14 0.10 8.14 -2.39 -0.02 0.08 16 42 H 0.14 0.22 8.14 -2.39 -0.02 0.20 16 Total: -1.00 -83.68 347.84 3.79 -79.89 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: 0.97 Total: 12.24 kcal Atomic # 6 Polarization: 9.10 SS G_CDS: 6.96 Total: 16.06 kcal Atomic # 7 Polarization: -98.16 SS G_CDS: -5.16 Total: -103.32 kcal Atomic # 8 Polarization: -59.22 SS G_CDS: -0.14 Total: -59.36 kcal Atomic # 14 Polarization: 41.67 SS G_CDS: 2.03 Total: 43.70 kcal Atomic # 16 Polarization: 11.66 SS G_CDS: -0.87 Total: 10.79 kcal Total: -83.68 3.79 -79.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000518640424.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.390 kcal (2) G-P(sol) polarization free energy of solvation -83.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds