Wall clock time and date at job start Wed Apr 1 2020 04:29:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42911 * 113.99883 * 2 1 4 4 C 1.52995 * 109.47131 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.47247 * 64.99836 * 4 3 2 6 6 C 1.46496 * 120.00170 * 275.00082 * 5 4 3 7 7 C 1.50703 * 109.47175 * 279.99989 * 6 5 4 8 8 H 1.08002 * 120.00078 * 4.23866 * 7 6 5 9 9 C 1.37879 * 119.99849 * 184.23495 * 7 6 5 10 10 N 1.31508 * 120.00113 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 119.99678 * 180.02562 * 9 7 6 12 12 H 1.48504 * 109.47207 * 359.97438 * 11 9 7 13 13 H 1.48498 * 109.47356 * 120.00239 * 11 9 7 14 14 H 1.48500 * 109.46997 * 239.99877 * 11 9 7 15 15 S 1.65599 * 119.99814 * 95.00229 * 5 4 3 16 16 O 1.42106 * 106.40415 * 330.09034 * 15 5 4 17 17 O 1.42101 * 106.40244 * 197.17424 * 15 5 4 18 18 N 1.65599 * 107.22196 * 83.63113 * 15 5 4 19 19 C 1.46500 * 119.99955 * 65.23492 * 18 15 5 20 20 C 1.50701 * 109.47449 * 165.46503 * 19 18 15 21 21 N 1.31863 * 119.63900 * 269.98464 * 20 19 18 22 22 C 1.31844 * 121.74933 * 179.67748 * 21 20 19 23 23 C 1.38236 * 120.82244 * 0.62876 * 22 21 20 24 24 C 1.38592 * 119.18516 * 359.40578 * 23 22 21 25 25 C 1.38430 * 119.63252 * 89.99730 * 20 19 18 26 26 F 1.35100 * 120.44632 * 359.97438 * 25 20 19 27 27 H 1.08998 * 109.46578 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47101 * 299.99864 * 1 2 3 29 29 H 1.09005 * 109.47029 * 59.99998 * 1 2 3 30 30 H 1.08999 * 109.46778 * 60.00115 * 3 2 1 31 31 H 1.08995 * 109.47071 * 300.00066 * 3 2 1 32 32 H 1.08999 * 109.47117 * 304.99945 * 4 3 2 33 33 H 1.09001 * 109.47094 * 185.00417 * 4 3 2 34 34 H 1.08997 * 109.47095 * 40.00157 * 6 5 4 35 35 H 1.08998 * 109.47111 * 160.00420 * 6 5 4 36 36 H 0.97001 * 119.99876 * 180.02562 * 10 9 7 37 37 H 0.96994 * 120.00149 * 245.24230 * 18 15 5 38 38 H 1.09001 * 109.46844 * 45.46837 * 19 18 15 39 39 H 1.09001 * 109.47133 * 285.47022 * 19 18 15 40 40 H 1.08002 * 119.59194 * 180.30984 * 22 21 20 41 41 H 1.07998 * 120.40589 * 179.67707 * 23 22 21 42 42 H 1.07996 * 120.79756 * 180.29320 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9757 0.5645 -1.2527 6 6 4.0004 -0.8948 -1.3781 7 6 5.2427 -1.4348 -0.7177 8 1 5.9088 -0.7666 -0.1921 9 6 5.5290 -2.7819 -0.7845 10 7 4.7182 -3.5955 -1.4250 11 14 7.0685 -3.4513 0.0347 12 1 7.8074 -2.3387 0.6841 13 1 6.6871 -4.4570 1.0585 14 1 7.9354 -4.0902 -0.9878 15 16 4.4454 1.5131 -2.5262 16 8 3.7029 2.7204 -2.4227 17 8 4.4190 0.6808 -3.6777 18 7 6.0319 1.9173 -2.2776 19 6 7.0638 0.8775 -2.2934 20 6 8.4227 1.5198 -2.4026 21 7 8.9427 1.7473 -3.5928 22 6 10.1252 2.3124 -3.7368 23 6 10.8743 2.6783 -2.6341 24 6 10.3628 2.4557 -1.3654 25 6 9.1113 1.8642 -1.2522 26 9 8.5730 1.6288 -0.0357 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.6886 1.8464 0.8900 31 1 1.6886 1.8464 -0.8899 32 1 3.8514 0.5684 0.8409 33 1 3.9785 2.1767 0.0890 34 1 3.1193 -1.3161 -0.8942 35 1 4.0015 -1.1689 -2.4331 36 1 4.9194 -4.5432 -1.4716 37 1 6.2780 2.8424 -2.1214 38 1 6.9034 0.2194 -3.1474 39 1 7.0091 0.2972 -1.3723 40 1 10.5157 2.4870 -4.7285 41 1 11.8444 3.1360 -2.7598 42 1 10.9237 2.7356 -0.4861 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000571418884.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:20 Heat of formation + Delta-G solvation = -122.980277 kcal Electronic energy + Delta-G solvation = -29820.651851 eV Core-core repulsion = 25456.789703 eV Total energy + Delta-G solvation = -4363.862148 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.115 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -48.98046 -40.21074 -37.67517 -36.61849 -35.39318 -35.15602 -35.11327 -32.52532 -32.49488 -30.90691 -29.42965 -26.75543 -26.22054 -25.60904 -23.67935 -22.79346 -22.30013 -21.70181 -18.90465 -17.80100 -17.46905 -17.26312 -17.04204 -16.57806 -16.21069 -15.94323 -15.77947 -15.60149 -15.27621 -14.75057 -14.43136 -14.35284 -14.08459 -13.68803 -13.55417 -13.38201 -13.19775 -12.77648 -12.61369 -12.29613 -12.17506 -11.97559 -11.84300 -11.60644 -11.48346 -11.34103 -11.16028 -11.03123 -10.82633 -10.58412 -10.35111 -10.08122 -9.99775 -9.73090 -9.66622 -9.23693 -9.06187 -9.03450 -8.39956 -7.95833 -6.01978 -4.07360 0.68033 0.89978 1.35095 3.28470 3.34295 3.37261 3.39290 3.67288 3.87620 4.15318 4.22966 4.24371 4.42513 4.45828 4.55249 4.71356 5.10083 5.19305 5.31839 5.39523 5.48527 5.50372 5.57895 5.60510 5.68235 5.70821 5.75206 5.84743 5.86709 5.98735 6.07253 6.23840 6.39197 6.47757 6.63465 7.24901 7.55248 7.60421 7.62482 7.73437 7.83768 7.97563 8.27875 8.97079 9.56955 11.06012 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.009859 B = 0.004911 C = 0.003831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2839.381108 B = 5699.979577 C = 7306.927804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.368 6.368 3 C 0.043 3.957 4 C 0.137 3.863 5 N -0.983 5.983 6 C 0.241 3.759 7 C -0.537 4.537 8 H 0.063 0.937 9 C 0.067 3.933 10 N -0.885 5.885 11 Si 0.884 3.116 12 H -0.271 1.271 13 H -0.284 1.284 14 H -0.284 1.284 15 S 2.784 3.216 16 O -1.001 7.001 17 O -0.971 6.971 18 N -1.124 6.124 19 C 0.167 3.833 20 C 0.101 3.899 21 N -0.441 5.441 22 C 0.086 3.914 23 C -0.146 4.146 24 C -0.114 4.114 25 C 0.065 3.935 26 F -0.119 7.119 27 H 0.083 0.917 28 H 0.033 0.967 29 H 0.035 0.965 30 H 0.049 0.951 31 H 0.051 0.949 32 H 0.092 0.908 33 H 0.076 0.924 34 H 0.055 0.945 35 H 0.053 0.947 36 H 0.262 0.738 37 H 0.405 0.595 38 H 0.105 0.895 39 H 0.107 0.893 40 H 0.164 0.836 41 H 0.144 0.856 42 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.038 13.303 1.853 15.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.287 6.287 3 C -0.036 4.036 4 C 0.010 3.990 5 N -0.825 5.825 6 C 0.120 3.880 7 C -0.577 4.577 8 H 0.081 0.919 9 C -0.136 4.136 10 N -0.523 5.523 11 Si 0.712 3.288 12 H -0.196 1.196 13 H -0.210 1.210 14 H -0.210 1.210 15 S 2.792 3.208 16 O -0.985 6.985 17 O -0.955 6.955 18 N -0.882 5.882 19 C 0.041 3.959 20 C -0.040 4.040 21 N -0.150 5.150 22 C -0.072 4.072 23 C -0.166 4.166 24 C -0.141 4.141 25 C 0.043 3.957 26 F -0.098 7.098 27 H 0.101 0.899 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.110 0.890 33 H 0.094 0.906 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.237 0.763 38 H 0.123 0.877 39 H 0.125 0.875 40 H 0.181 0.819 41 H 0.162 0.838 42 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 6.019 12.712 0.308 14.068 hybrid contribution 1.568 0.256 1.895 2.473 sum 7.587 12.969 2.202 15.185 Atomic orbital electron populations 1.22698 0.82451 1.02398 0.99075 1.88108 1.18357 1.27041 1.95148 1.23114 0.95399 0.85186 0.99903 1.21051 0.91324 0.97545 0.89105 1.57656 1.78357 1.19436 1.27031 1.19352 0.98253 0.71324 0.99099 1.21585 1.08177 0.93007 1.34900 0.91926 1.24906 0.96535 0.96965 0.95234 1.69946 1.36664 1.04119 1.41567 0.86671 0.83504 0.79281 0.79387 1.19591 1.20960 1.20961 1.01850 0.72413 0.72426 0.74157 1.93544 1.69468 1.47702 1.87792 1.93590 1.86081 1.68514 1.47297 1.56002 1.25607 1.15675 1.90890 1.20268 0.80573 0.88893 1.06203 1.21625 0.97643 0.97559 0.87190 1.67661 1.12198 1.10340 1.24753 1.22914 0.90061 0.94582 0.99603 1.22093 1.01561 1.00722 0.92220 1.21678 0.94157 0.98533 0.99707 1.18664 0.93961 1.01396 0.81725 1.91577 1.85603 1.91997 1.40597 0.89883 0.94846 0.94632 0.93280 0.93073 0.88998 0.90562 0.92699 0.92944 0.92767 0.76327 0.87732 0.87484 0.81873 0.83828 0.83505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 11.01 101.05 1.11 1.55 16 2 O -0.37 -6.83 8.99 -35.23 -0.32 -7.15 16 3 C 0.04 0.70 6.28 37.16 0.23 0.94 16 4 C 0.14 2.38 5.75 -4.04 -0.02 2.35 16 5 N -0.98 -20.28 2.83 -115.67 -0.33 -20.61 16 6 C 0.24 6.02 5.32 -5.19 -0.03 6.00 16 7 C -0.54 -13.83 8.51 -34.44 -0.29 -14.13 16 8 H 0.06 1.54 6.45 -52.49 -0.34 1.20 16 9 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 10 N -0.88 -25.47 13.29 55.43 0.74 -24.73 16 11 Si 0.88 20.71 29.54 -169.99 -5.02 15.69 16 12 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 13 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 14 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 15 S 2.78 55.82 6.07 -107.50 -0.65 55.17 16 16 O -1.00 -20.25 17.17 -57.17 -0.98 -21.23 16 17 O -0.97 -23.14 16.01 -57.17 -0.92 -24.05 16 18 N -1.12 -19.04 6.05 -11.65 -0.07 -19.11 16 19 C 0.17 2.99 6.31 -5.19 -0.03 2.95 16 20 C 0.10 1.55 6.18 -82.51 -0.51 1.04 16 21 N -0.44 -6.45 10.27 -9.42 -0.10 -6.54 16 22 C 0.09 0.90 11.18 -17.55 -0.20 0.71 16 23 C -0.15 -1.25 10.11 -39.45 -0.40 -1.65 16 24 C -0.11 -1.16 10.16 -39.22 -0.40 -1.55 16 25 C 0.06 0.89 7.27 -39.27 -0.29 0.60 16 26 F -0.12 -1.79 16.49 2.25 0.04 -1.75 16 27 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 28 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.87 7.96 -51.93 -0.41 0.45 16 32 H 0.09 1.63 8.09 -51.93 -0.42 1.21 16 33 H 0.08 1.11 7.78 -51.93 -0.40 0.70 16 34 H 0.06 1.47 6.56 -51.93 -0.34 1.13 16 35 H 0.05 1.46 6.77 -51.93 -0.35 1.11 16 36 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 37 H 0.41 5.79 8.64 -34.47 -0.30 5.50 16 38 H 0.10 2.06 7.76 -51.93 -0.40 1.66 16 39 H 0.11 2.05 5.34 -51.93 -0.28 1.77 16 40 H 0.16 1.19 8.06 -52.49 -0.42 0.76 16 41 H 0.14 0.71 8.06 -52.49 -0.42 0.29 16 42 H 0.15 1.09 8.06 -52.49 -0.42 0.67 16 LS Contribution 372.00 15.07 5.61 5.61 Total: -1.00 -34.00 372.00 -8.26 -42.26 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: -5.34 Total: 5.93 kcal Atomic # 6 Polarization: 1.44 SS G_CDS: -0.92 Total: 0.53 kcal Atomic # 7 Polarization: -71.24 SS G_CDS: 0.24 Total: -70.99 kcal Atomic # 8 Polarization: -50.23 SS G_CDS: -2.21 Total: -52.44 kcal Atomic # 9 Polarization: -1.79 SS G_CDS: 0.04 Total: -1.75 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Atomic # 16 Polarization: 55.82 SS G_CDS: -0.65 Total: 55.17 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.00 -8.26 -42.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571418884.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.720 kcal (2) G-P(sol) polarization free energy of solvation -33.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds