Wall clock time and date at job start Wed Apr 1 2020 04:29:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42911 * 113.99883 * 2 1 4 4 C 1.52995 * 109.47131 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.47247 * 64.99836 * 4 3 2 6 6 C 1.46496 * 120.00170 * 275.00082 * 5 4 3 7 7 C 1.50703 * 109.47175 * 279.99989 * 6 5 4 8 8 H 1.08002 * 120.00078 * 4.23866 * 7 6 5 9 9 C 1.37879 * 119.99849 * 184.23495 * 7 6 5 10 10 N 1.31508 * 120.00113 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 119.99678 * 180.02562 * 9 7 6 12 12 H 1.48504 * 109.47207 * 359.97438 * 11 9 7 13 13 H 1.48498 * 109.47356 * 120.00239 * 11 9 7 14 14 H 1.48500 * 109.46997 * 239.99877 * 11 9 7 15 15 S 1.65599 * 119.99814 * 95.00229 * 5 4 3 16 16 O 1.42106 * 106.40415 * 330.09034 * 15 5 4 17 17 O 1.42101 * 106.40244 * 197.17424 * 15 5 4 18 18 N 1.65599 * 107.22196 * 83.63113 * 15 5 4 19 19 C 1.46500 * 119.99955 * 65.23492 * 18 15 5 20 20 C 1.50701 * 109.47449 * 165.46503 * 19 18 15 21 21 N 1.31863 * 119.63900 * 269.98464 * 20 19 18 22 22 C 1.31844 * 121.74933 * 179.67748 * 21 20 19 23 23 C 1.38236 * 120.82244 * 0.62876 * 22 21 20 24 24 C 1.38592 * 119.18516 * 359.40578 * 23 22 21 25 25 C 1.38430 * 119.63252 * 89.99730 * 20 19 18 26 26 F 1.35100 * 120.44632 * 359.97438 * 25 20 19 27 27 H 1.08998 * 109.46578 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47101 * 299.99864 * 1 2 3 29 29 H 1.09005 * 109.47029 * 59.99998 * 1 2 3 30 30 H 1.08999 * 109.46778 * 60.00115 * 3 2 1 31 31 H 1.08995 * 109.47071 * 300.00066 * 3 2 1 32 32 H 1.08999 * 109.47117 * 304.99945 * 4 3 2 33 33 H 1.09001 * 109.47094 * 185.00417 * 4 3 2 34 34 H 1.08997 * 109.47095 * 40.00157 * 6 5 4 35 35 H 1.08998 * 109.47111 * 160.00420 * 6 5 4 36 36 H 0.97001 * 119.99876 * 180.02562 * 10 9 7 37 37 H 0.96994 * 120.00149 * 245.24230 * 18 15 5 38 38 H 1.09001 * 109.46844 * 45.46837 * 19 18 15 39 39 H 1.09001 * 109.47133 * 285.47022 * 19 18 15 40 40 H 1.08002 * 119.59194 * 180.30984 * 22 21 20 41 41 H 1.07998 * 120.40589 * 179.67707 * 23 22 21 42 42 H 1.07996 * 120.79756 * 180.29320 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9757 0.5645 -1.2527 6 6 4.0004 -0.8948 -1.3781 7 6 5.2427 -1.4348 -0.7177 8 1 5.9088 -0.7666 -0.1921 9 6 5.5290 -2.7819 -0.7845 10 7 4.7182 -3.5955 -1.4250 11 14 7.0685 -3.4513 0.0347 12 1 7.8074 -2.3387 0.6841 13 1 6.6871 -4.4570 1.0585 14 1 7.9354 -4.0902 -0.9878 15 16 4.4454 1.5131 -2.5262 16 8 3.7029 2.7204 -2.4227 17 8 4.4190 0.6808 -3.6777 18 7 6.0319 1.9173 -2.2776 19 6 7.0638 0.8775 -2.2934 20 6 8.4227 1.5198 -2.4026 21 7 8.9427 1.7473 -3.5928 22 6 10.1252 2.3124 -3.7368 23 6 10.8743 2.6783 -2.6341 24 6 10.3628 2.4557 -1.3654 25 6 9.1113 1.8642 -1.2522 26 9 8.5730 1.6288 -0.0357 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.6886 1.8464 0.8900 31 1 1.6886 1.8464 -0.8899 32 1 3.8514 0.5684 0.8409 33 1 3.9785 2.1767 0.0890 34 1 3.1193 -1.3161 -0.8942 35 1 4.0015 -1.1689 -2.4331 36 1 4.9194 -4.5432 -1.4716 37 1 6.2780 2.8424 -2.1214 38 1 6.9034 0.2194 -3.1474 39 1 7.0091 0.2972 -1.3723 40 1 10.5157 2.4870 -4.7285 41 1 11.8444 3.1360 -2.7598 42 1 10.9237 2.7356 -0.4861 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000571418884.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:20 Heat of formation + Delta-G solvation = -150.122476 kcal Electronic energy + Delta-G solvation = -29821.828825 eV Core-core repulsion = 25456.789703 eV Total energy + Delta-G solvation = -4365.039122 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.115 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -50.01814 -41.13274 -39.05037 -38.33722 -37.00228 -36.89684 -36.50083 -34.51696 -33.40828 -31.92644 -31.01466 -28.48609 -27.43064 -26.98160 -24.61129 -24.55561 -23.39962 -23.21958 -20.50119 -19.01213 -18.79181 -18.52530 -18.48968 -18.18974 -17.65291 -17.26467 -17.04686 -16.90224 -16.54193 -16.43891 -15.86256 -15.77872 -15.14507 -14.93362 -14.81417 -14.58995 -14.42126 -14.29027 -13.95584 -13.82735 -13.51693 -13.44373 -13.34209 -13.22764 -13.16560 -12.95494 -12.79252 -12.68163 -12.53126 -12.22488 -11.99385 -11.83835 -11.60636 -10.91752 -10.62677 -10.57360 -10.56491 -10.43719 -9.99319 -9.70671 -8.10208 -6.21873 -0.46146 -0.08809 0.09851 1.41708 1.43447 1.54167 1.95662 2.44415 2.50936 2.68194 2.92577 3.00550 3.19133 3.23330 3.43119 3.61405 3.73538 3.96090 3.97815 4.21264 4.28467 4.40779 4.47711 4.50574 4.53587 4.57129 4.60322 4.70613 4.80177 4.86467 4.91163 4.93490 5.01764 5.12025 5.49910 5.61376 5.62517 5.81779 5.90282 6.09223 6.20379 6.41745 6.83420 6.90462 7.46290 8.98581 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.009859 B = 0.004911 C = 0.003831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2839.381108 B = 5699.979577 C = 7306.927804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.407 6.407 3 C 0.041 3.959 4 C 0.126 3.874 5 N -0.987 5.987 6 C 0.262 3.738 7 C -0.532 4.532 8 H 0.074 0.926 9 C 0.012 3.988 10 N -0.927 5.927 11 Si 0.947 3.053 12 H -0.257 1.257 13 H -0.281 1.281 14 H -0.284 1.284 15 S 2.799 3.201 16 O -1.000 7.000 17 O -1.014 7.014 18 N -1.108 6.108 19 C 0.172 3.828 20 C 0.072 3.928 21 N -0.478 5.478 22 C 0.082 3.918 23 C -0.119 4.119 24 C -0.106 4.106 25 C 0.047 3.953 26 F -0.133 7.133 27 H 0.084 0.916 28 H 0.060 0.940 29 H 0.040 0.960 30 H 0.087 0.913 31 H 0.043 0.957 32 H 0.087 0.913 33 H 0.108 0.892 34 H 0.034 0.966 35 H 0.015 0.985 36 H 0.263 0.737 37 H 0.419 0.581 38 H 0.073 0.927 39 H 0.090 0.910 40 H 0.196 0.804 41 H 0.193 0.807 42 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.918 15.712 3.170 18.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.327 6.327 3 C -0.037 4.037 4 C 0.001 3.999 5 N -0.827 5.827 6 C 0.138 3.862 7 C -0.571 4.571 8 H 0.092 0.908 9 C -0.187 4.187 10 N -0.567 5.567 11 Si 0.772 3.228 12 H -0.180 1.180 13 H -0.207 1.207 14 H -0.210 1.210 15 S 2.807 3.193 16 O -0.984 6.984 17 O -0.997 6.997 18 N -0.869 5.869 19 C 0.046 3.954 20 C -0.067 4.067 21 N -0.187 5.187 22 C -0.076 4.076 23 C -0.139 4.139 24 C -0.132 4.132 25 C 0.025 3.975 26 F -0.112 7.112 27 H 0.103 0.897 28 H 0.079 0.921 29 H 0.058 0.942 30 H 0.105 0.895 31 H 0.061 0.939 32 H 0.106 0.894 33 H 0.126 0.874 34 H 0.052 0.948 35 H 0.033 0.967 36 H 0.072 0.928 37 H 0.254 0.746 38 H 0.092 0.908 39 H 0.108 0.892 40 H 0.213 0.787 41 H 0.211 0.789 42 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 8.878 15.166 1.652 17.651 hybrid contribution 0.736 -0.362 1.421 1.640 sum 9.614 14.804 3.073 17.918 Atomic orbital electron populations 1.22879 0.80512 1.03126 1.00624 1.88054 1.20710 1.28437 1.95453 1.23189 0.94485 0.84791 1.01283 1.21394 0.92582 0.98715 0.87248 1.57497 1.79073 1.17653 1.28524 1.18799 0.97273 0.73780 0.96335 1.21857 1.08162 0.93167 1.33955 0.90804 1.25732 0.99503 0.97483 0.95964 1.70088 1.38783 1.04390 1.43459 0.85668 0.79909 0.78853 0.78328 1.18024 1.20666 1.21032 1.01210 0.72876 0.71849 0.73366 1.93532 1.70027 1.47177 1.87686 1.93537 1.86914 1.69763 1.49531 1.55598 1.24367 1.16477 1.90425 1.19988 0.82805 0.88840 1.03799 1.21132 0.96873 1.00130 0.88581 1.67554 1.14548 1.11951 1.24665 1.23583 0.88778 0.93205 1.02028 1.22619 1.02589 0.98066 0.90602 1.22112 0.92506 0.96820 1.01763 1.18861 0.95412 1.02706 0.80558 1.91534 1.86101 1.92354 1.41220 0.89723 0.92105 0.94151 0.89500 0.93862 0.89427 0.87369 0.94841 0.96745 0.92822 0.74611 0.90844 0.89174 0.78738 0.78945 0.80285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.70 11.01 113.37 1.25 1.94 16 2 O -0.41 -15.28 8.99 -148.98 -1.34 -16.62 16 3 C 0.04 1.31 6.28 71.98 0.45 1.76 16 4 C 0.13 4.35 5.75 86.38 0.50 4.84 16 5 N -0.99 -41.96 2.83 -519.87 -1.47 -43.43 16 6 C 0.26 13.75 5.32 85.63 0.46 14.21 16 7 C -0.53 -28.29 8.51 25.60 0.22 -28.07 16 8 H 0.07 3.69 6.45 -2.91 -0.02 3.67 16 9 C 0.01 0.69 5.46 84.66 0.46 1.15 16 10 N -0.93 -55.55 13.29 21.45 0.28 -55.26 16 11 Si 0.95 43.20 29.54 68.60 2.03 45.23 16 12 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 13 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 14 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 15 S 2.80 115.73 6.07 -56.49 -0.34 115.38 16 16 O -1.00 -40.34 17.17 -128.00 -2.20 -42.54 16 17 O -1.01 -51.12 16.01 -128.00 -2.05 -53.17 16 18 N -1.11 -38.36 6.05 -190.78 -1.15 -39.52 16 19 C 0.17 6.43 6.31 85.63 0.54 6.97 16 20 C 0.07 2.21 6.18 42.60 0.26 2.48 16 21 N -0.48 -13.59 10.27 -183.71 -1.89 -15.47 16 22 C 0.08 1.46 11.18 84.69 0.95 2.40 16 23 C -0.12 -1.45 10.11 22.35 0.23 -1.22 16 24 C -0.11 -1.72 10.16 22.51 0.23 -1.50 16 25 C 0.05 1.22 7.27 22.47 0.16 1.38 16 26 F -0.13 -3.87 16.49 44.97 0.74 -3.13 16 27 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 28 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.04 1.07 8.14 -2.38 -0.02 1.05 16 30 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 31 H 0.04 1.44 7.96 -2.39 -0.02 1.43 16 32 H 0.09 3.09 8.09 -2.39 -0.02 3.07 16 33 H 0.11 2.97 7.78 -2.39 -0.02 2.95 16 34 H 0.03 1.90 6.56 -2.39 -0.02 1.88 16 35 H 0.01 0.87 6.77 -2.39 -0.02 0.85 16 36 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 37 H 0.42 11.93 8.64 -96.75 -0.84 11.10 16 38 H 0.07 3.14 7.76 -2.39 -0.02 3.12 16 39 H 0.09 3.60 5.34 -2.39 -0.01 3.58 16 40 H 0.20 2.04 8.06 -2.91 -0.02 2.02 16 41 H 0.19 0.51 8.06 -2.91 -0.02 0.49 16 42 H 0.18 1.74 8.06 -2.91 -0.02 1.71 16 Total: -1.00 -78.40 372.00 -1.46 -79.85 By element: Atomic # 1 Polarization: 22.10 SS G_CDS: 0.23 Total: 22.33 kcal Atomic # 6 Polarization: 0.65 SS G_CDS: 5.70 Total: 6.35 kcal Atomic # 7 Polarization: -149.46 SS G_CDS: -4.23 Total: -153.68 kcal Atomic # 8 Polarization: -106.74 SS G_CDS: -5.59 Total: -112.33 kcal Atomic # 9 Polarization: -3.87 SS G_CDS: 0.74 Total: -3.13 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Atomic # 16 Polarization: 115.73 SS G_CDS: -0.34 Total: 115.38 kcal Total: -78.40 -1.46 -79.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571418884.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.268 kcal (2) G-P(sol) polarization free energy of solvation -78.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds