Wall clock time and date at job start Wed Apr 1 2020 04:06:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34122 * 125.13045 * 2 1 4 4 C 1.37989 * 107.93223 * 180.02562 * 3 2 1 5 5 C 1.47194 * 126.81955 * 179.97438 * 4 3 2 6 6 O 1.21631 * 120.00388 * 179.97438 * 5 4 3 7 7 N 1.34774 * 120.00287 * 359.97438 * 5 4 3 8 8 C 1.47027 * 125.64578 * 0.02852 * 7 5 4 9 9 C 1.54327 * 107.27263 * 181.01996 * 8 7 5 10 10 C 1.55155 * 102.93863 * 22.19071 * 9 8 7 11 11 O 1.42898 * 111.00797 * 82.57349 * 10 9 8 12 12 C 1.50701 * 111.00036 * 206.38566 * 10 9 8 13 13 H 1.07997 * 120.00216 * 359.97438 * 12 10 9 14 14 C 1.37883 * 120.00145 * 180.02562 * 12 10 9 15 15 N 1.31520 * 119.99580 * 0.02562 * 14 12 10 16 16 Si 1.86802 * 120.00252 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.46747 * 60.00339 * 16 14 12 18 18 H 1.48498 * 109.47026 * 180.02562 * 16 14 12 19 19 H 1.48494 * 109.46934 * 299.99928 * 16 14 12 20 20 C 1.47425 * 125.65199 * 179.71054 * 7 5 4 21 21 C 1.46750 * 106.36236 * 359.97438 * 4 3 2 22 22 C 1.47706 * 126.54092 * 179.97438 * 21 4 3 23 23 C 1.34850 * 125.27315 * 145.00038 * 22 21 4 24 24 C 1.37936 * 114.69741 * 180.02562 * 23 22 21 25 25 C 1.33631 * 115.07100 * 359.97438 * 24 23 22 26 26 S 1.75855 * 109.76392 * 0.23448 * 25 24 23 27 27 N 1.31567 * 106.91649 * 0.26639 * 21 4 3 28 28 H 1.08993 * 109.47484 * 90.00398 * 1 2 3 29 29 H 1.09005 * 109.47021 * 210.00745 * 1 2 3 30 30 H 1.09005 * 109.47114 * 329.99777 * 1 2 3 31 31 H 1.08002 * 126.03710 * 0.02562 * 3 2 1 32 32 H 1.08999 * 109.87848 * 300.43731 * 8 7 5 33 33 H 1.08997 * 109.88647 * 61.44631 * 8 7 5 34 34 H 1.08996 * 110.71633 * 140.54963 * 9 8 7 35 35 H 1.08994 * 110.71814 * 263.82708 * 9 8 7 36 36 H 0.96700 * 114.00365 * 179.97438 * 11 10 9 37 37 H 0.97002 * 119.99345 * 179.97438 * 15 14 12 38 38 H 1.08993 * 110.37018 * 274.74730 * 20 7 5 39 39 H 1.08996 * 110.36586 * 37.07793 * 20 7 5 40 40 H 1.08000 * 122.65090 * 0.05793 * 23 22 21 41 41 H 1.08005 * 122.46055 * 179.97438 * 24 23 22 42 42 H 1.08002 * 125.11381 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2368 1.0969 0.0000 4 6 3.5550 0.6889 -0.0006 5 6 4.7461 1.5537 -0.0013 6 8 5.8571 1.0587 -0.0013 7 7 4.6057 2.8941 -0.0020 8 6 3.3281 3.6218 -0.0015 9 6 3.6592 5.1289 -0.0289 10 6 5.0958 5.1584 -0.6143 11 8 5.0692 5.0838 -2.0410 12 6 5.8414 6.3847 -0.1543 13 1 5.3584 7.0974 0.4978 14 6 7.1398 6.5973 -0.5667 15 7 7.7273 5.7301 -1.3621 16 14 8.0637 8.1176 0.0029 17 1 8.1540 8.1155 1.4851 18 1 9.4308 8.1121 -0.5768 19 1 7.3406 9.3339 -0.4474 20 6 5.7076 3.8735 0.0033 21 6 3.5336 -0.7784 -0.0003 22 6 4.7073 -1.6751 -0.0013 23 6 4.7793 -2.8644 0.6303 24 6 5.9828 -3.5225 0.4845 25 6 6.8912 -2.8835 -0.2586 26 16 6.2300 -1.3541 -0.8211 27 7 2.2694 -1.1429 -0.0055 28 1 -0.3634 -0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5140 30 1 -0.3633 0.8900 0.5139 31 1 1.8882 2.1191 0.0004 32 1 2.7484 3.3536 -0.8847 33 1 2.7641 3.3802 0.8994 34 1 2.9669 5.6641 -0.6787 35 1 3.6446 5.5453 0.9783 36 1 5.9443 5.0993 -2.4521 37 1 8.6407 5.8799 -1.6525 38 1 6.0424 4.0624 1.0231 39 1 6.5356 3.5162 -0.6088 40 1 3.9593 -3.2698 1.2044 41 1 6.1765 -4.4835 0.9377 42 1 7.8836 -3.2492 -0.4770 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592847000.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:06:36 Heat of formation + Delta-G solvation = 46.658011 kcal Electronic energy + Delta-G solvation = -28209.269931 eV Core-core repulsion = 24283.533076 eV Total energy + Delta-G solvation = -3925.736855 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.14024 -39.04789 -37.43492 -37.03174 -34.36851 -33.51921 -32.16451 -31.04100 -29.87721 -29.47978 -27.80313 -26.73109 -25.20112 -23.99373 -23.28806 -21.34865 -20.97678 -19.73568 -19.27950 -18.61680 -17.24192 -17.12012 -16.55208 -15.91425 -15.74167 -15.30454 -15.18351 -14.90294 -14.66923 -14.27004 -13.77134 -13.35892 -13.31416 -13.06495 -12.95448 -12.90998 -12.66042 -12.42504 -12.30713 -12.08408 -11.92146 -11.58119 -11.42402 -11.05702 -11.02152 -10.75813 -10.64637 -10.52253 -10.31476 -10.20716 -9.79166 -9.50224 -9.33913 -8.74751 -8.69742 -8.40752 -8.16228 -7.87346 -7.74215 -6.30793 -4.40572 0.89832 1.58258 1.75825 2.28609 2.35452 2.48998 3.06808 3.20540 3.26966 3.28116 3.65757 3.86031 4.23812 4.27632 4.48694 4.74159 4.88925 4.95159 5.13346 5.18790 5.23747 5.28040 5.30931 5.50266 5.52462 5.64792 5.73528 5.74784 5.93807 6.10953 6.24363 6.26407 6.44103 6.54687 6.63862 6.67151 6.72871 6.82808 7.00676 7.24555 7.32443 7.49527 7.72447 7.96763 8.24078 8.62031 8.82272 9.29242 9.44075 10.76411 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.012823 B = 0.003505 C = 0.002862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2183.024213 B = 7986.292218 C = 9782.368863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.369 5.369 3 C 0.090 3.910 4 C -0.271 4.271 5 C 0.594 3.406 6 O -0.538 6.538 7 N -0.603 5.603 8 C 0.097 3.903 9 C -0.119 4.119 10 C 0.250 3.750 11 O -0.584 6.584 12 C -0.540 4.540 13 H 0.066 0.934 14 C 0.072 3.928 15 N -0.894 5.894 16 Si 0.904 3.096 17 H -0.275 1.275 18 H -0.285 1.285 19 H -0.275 1.275 20 C 0.097 3.903 21 C 0.194 3.806 22 C -0.137 4.137 23 C -0.115 4.115 24 C -0.149 4.149 25 C -0.253 4.253 26 S 0.266 5.734 27 N -0.283 5.283 28 H 0.078 0.922 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.197 0.803 32 H 0.061 0.939 33 H 0.055 0.945 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.387 0.613 37 H 0.272 0.728 38 H 0.061 0.939 39 H 0.084 0.916 40 H 0.135 0.865 41 H 0.133 0.867 42 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.421 -12.069 2.568 16.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.148 5.148 3 C -0.058 4.058 4 C -0.286 4.286 5 C 0.383 3.617 6 O -0.418 6.418 7 N -0.334 5.334 8 C -0.026 4.026 9 C -0.157 4.157 10 C 0.209 3.791 11 O -0.395 6.395 12 C -0.578 4.578 13 H 0.084 0.916 14 C -0.131 4.131 15 N -0.533 5.533 16 Si 0.731 3.269 17 H -0.200 1.200 18 H -0.210 1.210 19 H -0.200 1.200 20 C -0.025 4.025 21 C 0.025 3.975 22 C -0.258 4.258 23 C -0.149 4.149 24 C -0.180 4.180 25 C -0.390 4.390 26 S 0.534 5.466 27 N -0.104 5.104 28 H 0.097 0.903 29 H 0.110 0.890 30 H 0.110 0.890 31 H 0.214 0.786 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.094 0.906 35 H 0.097 0.903 36 H 0.239 0.761 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.102 0.898 40 H 0.152 0.848 41 H 0.151 0.849 42 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -11.710 -12.207 1.647 16.995 hybrid contribution 0.913 0.362 1.243 1.584 sum -10.797 -11.845 2.890 16.286 Atomic orbital electron populations 1.21968 0.73677 1.04833 1.03814 1.48115 1.07022 1.03392 1.56319 1.23790 0.90719 0.93890 0.97370 1.21453 0.93139 0.92543 1.21474 1.16800 0.87402 0.80456 0.76994 1.90701 1.25969 1.72660 1.52448 1.48520 1.09265 1.04437 1.71218 1.22261 0.86868 0.94364 0.99126 1.22651 0.99357 0.92304 1.01352 1.19607 0.89193 0.90719 0.79543 1.86053 1.36241 1.96765 1.20401 1.21456 0.98119 1.07140 1.31134 0.91551 1.25071 0.97215 0.96705 0.94115 1.69555 1.14420 1.35429 1.33868 0.86453 0.78680 0.82631 0.79099 1.19999 1.21040 1.20019 1.23323 0.89532 0.88541 1.01082 1.20672 0.89963 0.90005 0.96849 1.21778 0.96796 0.98007 1.09176 1.20170 0.98830 0.93932 1.02008 1.19838 0.93302 1.01784 1.03071 1.26310 1.04529 1.00841 1.07348 1.85184 1.03465 1.11250 1.46707 1.77385 1.00933 1.06692 1.25423 0.90331 0.89029 0.89019 0.78644 0.92075 0.92666 0.90620 0.90345 0.76088 0.91766 0.92105 0.89750 0.84752 0.84947 0.82245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.67 11.39 59.85 0.68 1.35 16 2 N -0.37 -4.59 3.95 -67.65 -0.27 -4.86 16 3 C 0.09 1.21 9.92 -16.64 -0.17 1.05 16 4 C -0.27 -4.72 6.29 -102.91 -0.65 -5.37 16 5 C 0.59 12.15 7.84 -12.62 -0.10 12.05 16 6 O -0.54 -12.17 13.19 5.25 0.07 -12.10 16 7 N -0.60 -12.13 3.32 -171.73 -0.57 -12.70 16 8 C 0.10 1.58 5.00 -3.06 -0.02 1.56 16 9 C -0.12 -2.20 6.12 -24.90 -0.15 -2.35 16 10 C 0.25 5.83 0.89 -89.50 -0.08 5.75 16 11 O -0.58 -14.56 13.19 -35.23 -0.46 -15.02 16 12 C -0.54 -13.61 8.25 -34.44 -0.28 -13.89 16 13 H 0.07 1.63 7.76 -52.49 -0.41 1.22 16 14 C 0.07 1.84 5.30 -17.81 -0.09 1.74 16 15 N -0.89 -23.34 10.72 55.43 0.59 -22.74 16 16 Si 0.90 19.92 29.54 -169.99 -5.02 14.90 16 17 H -0.27 -6.02 7.11 56.52 0.40 -5.61 16 18 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 19 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 20 C 0.10 2.25 5.65 -2.41 -0.01 2.23 16 21 C 0.19 3.35 7.24 -80.68 -0.58 2.77 16 22 C -0.14 -2.31 6.11 -36.92 -0.23 -2.54 16 23 C -0.12 -1.68 10.10 -40.89 -0.41 -2.09 16 24 C -0.15 -1.94 10.16 -41.31 -0.42 -2.36 16 25 C -0.25 -3.39 11.22 29.12 0.33 -3.06 16 26 S 0.27 4.42 19.79 -107.50 -2.13 2.29 16 27 N -0.28 -4.40 12.51 34.50 0.43 -3.97 16 28 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.09 0.38 8.13 -51.93 -0.42 -0.05 16 31 H 0.20 2.07 4.45 -52.49 -0.23 1.84 16 32 H 0.06 0.91 6.86 -51.93 -0.36 0.55 16 33 H 0.06 0.73 7.01 -51.93 -0.36 0.36 16 34 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 35 H 0.08 1.36 8.01 -51.93 -0.42 0.94 16 36 H 0.39 10.07 6.93 45.56 0.32 10.39 16 37 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 38 H 0.06 1.45 8.03 -51.93 -0.42 1.04 16 39 H 0.08 2.22 7.64 -51.93 -0.40 1.82 16 40 H 0.13 1.76 8.06 -52.49 -0.42 1.34 16 41 H 0.13 1.35 8.06 -52.48 -0.42 0.92 16 42 H 0.16 1.71 8.06 -52.49 -0.42 1.28 16 LS Contribution 360.77 15.07 5.44 5.44 Total: -1.00 -31.37 360.77 -8.47 -39.84 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: -4.37 Total: 12.09 kcal Atomic # 6 Polarization: -0.98 SS G_CDS: -2.18 Total: -3.16 kcal Atomic # 7 Polarization: -44.46 SS G_CDS: 0.19 Total: -44.27 kcal Atomic # 8 Polarization: -26.73 SS G_CDS: -0.40 Total: -27.13 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.02 Total: 14.90 kcal Atomic # 16 Polarization: 4.42 SS G_CDS: -2.13 Total: 2.29 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.37 -8.47 -39.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592847000.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.501 kcal (2) G-P(sol) polarization free energy of solvation -31.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.843 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds