Wall clock time and date at job start Wed Apr 1 2020 04:06:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34122 * 125.13045 * 2 1 4 4 C 1.37989 * 107.93223 * 180.02562 * 3 2 1 5 5 C 1.47194 * 126.81955 * 179.97438 * 4 3 2 6 6 O 1.21631 * 120.00388 * 179.97438 * 5 4 3 7 7 N 1.34774 * 120.00287 * 359.97438 * 5 4 3 8 8 C 1.47027 * 125.64578 * 0.02852 * 7 5 4 9 9 C 1.54327 * 107.27263 * 181.01996 * 8 7 5 10 10 C 1.55155 * 102.93863 * 22.19071 * 9 8 7 11 11 O 1.42898 * 111.00797 * 82.57349 * 10 9 8 12 12 C 1.50701 * 111.00036 * 206.38566 * 10 9 8 13 13 H 1.07997 * 120.00216 * 359.97438 * 12 10 9 14 14 C 1.37883 * 120.00145 * 180.02562 * 12 10 9 15 15 N 1.31520 * 119.99580 * 0.02562 * 14 12 10 16 16 Si 1.86802 * 120.00252 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.46747 * 60.00339 * 16 14 12 18 18 H 1.48498 * 109.47026 * 180.02562 * 16 14 12 19 19 H 1.48494 * 109.46934 * 299.99928 * 16 14 12 20 20 C 1.47425 * 125.65199 * 179.71054 * 7 5 4 21 21 C 1.46750 * 106.36236 * 359.97438 * 4 3 2 22 22 C 1.47706 * 126.54092 * 179.97438 * 21 4 3 23 23 C 1.34850 * 125.27315 * 145.00038 * 22 21 4 24 24 C 1.37936 * 114.69741 * 180.02562 * 23 22 21 25 25 C 1.33631 * 115.07100 * 359.97438 * 24 23 22 26 26 S 1.75855 * 109.76392 * 0.23448 * 25 24 23 27 27 N 1.31567 * 106.91649 * 0.26639 * 21 4 3 28 28 H 1.08993 * 109.47484 * 90.00398 * 1 2 3 29 29 H 1.09005 * 109.47021 * 210.00745 * 1 2 3 30 30 H 1.09005 * 109.47114 * 329.99777 * 1 2 3 31 31 H 1.08002 * 126.03710 * 0.02562 * 3 2 1 32 32 H 1.08999 * 109.87848 * 300.43731 * 8 7 5 33 33 H 1.08997 * 109.88647 * 61.44631 * 8 7 5 34 34 H 1.08996 * 110.71633 * 140.54963 * 9 8 7 35 35 H 1.08994 * 110.71814 * 263.82708 * 9 8 7 36 36 H 0.96700 * 114.00365 * 179.97438 * 11 10 9 37 37 H 0.97002 * 119.99345 * 179.97438 * 15 14 12 38 38 H 1.08993 * 110.37018 * 274.74730 * 20 7 5 39 39 H 1.08996 * 110.36586 * 37.07793 * 20 7 5 40 40 H 1.08000 * 122.65090 * 0.05793 * 23 22 21 41 41 H 1.08005 * 122.46055 * 179.97438 * 24 23 22 42 42 H 1.08002 * 125.11381 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2368 1.0969 0.0000 4 6 3.5550 0.6889 -0.0006 5 6 4.7461 1.5537 -0.0013 6 8 5.8571 1.0587 -0.0013 7 7 4.6057 2.8941 -0.0020 8 6 3.3281 3.6218 -0.0015 9 6 3.6592 5.1289 -0.0289 10 6 5.0958 5.1584 -0.6143 11 8 5.0692 5.0838 -2.0410 12 6 5.8414 6.3847 -0.1543 13 1 5.3584 7.0974 0.4978 14 6 7.1398 6.5973 -0.5667 15 7 7.7273 5.7301 -1.3621 16 14 8.0637 8.1176 0.0029 17 1 8.1540 8.1155 1.4851 18 1 9.4308 8.1121 -0.5768 19 1 7.3406 9.3339 -0.4474 20 6 5.7076 3.8735 0.0033 21 6 3.5336 -0.7784 -0.0003 22 6 4.7073 -1.6751 -0.0013 23 6 4.7793 -2.8644 0.6303 24 6 5.9828 -3.5225 0.4845 25 6 6.8912 -2.8835 -0.2586 26 16 6.2300 -1.3541 -0.8211 27 7 2.2694 -1.1429 -0.0055 28 1 -0.3634 -0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5140 30 1 -0.3633 0.8900 0.5139 31 1 1.8882 2.1191 0.0004 32 1 2.7484 3.3536 -0.8847 33 1 2.7641 3.3802 0.8994 34 1 2.9669 5.6641 -0.6787 35 1 3.6446 5.5453 0.9783 36 1 5.9443 5.0993 -2.4521 37 1 8.6407 5.8799 -1.6525 38 1 6.0424 4.0624 1.0231 39 1 6.5356 3.5162 -0.6088 40 1 3.9593 -3.2698 1.2044 41 1 6.1765 -4.4835 0.9377 42 1 7.8836 -3.2492 -0.4770 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592847000.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:06:35 Heat of formation + Delta-G solvation = 24.722984 kcal Electronic energy + Delta-G solvation = -28210.221105 eV Core-core repulsion = 24283.533076 eV Total energy + Delta-G solvation = -3926.688029 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.27178 -40.57642 -38.69065 -38.51421 -36.09355 -34.49219 -34.12207 -32.42006 -31.29398 -30.52672 -29.44084 -27.76807 -26.87161 -25.25678 -24.57562 -22.62226 -22.12719 -21.39234 -20.65268 -19.71746 -19.11138 -18.31993 -17.90890 -17.11110 -17.04875 -16.86257 -16.37064 -16.30371 -16.17608 -15.86738 -14.95590 -14.86478 -14.65924 -14.55578 -14.18375 -13.98608 -13.72277 -13.49007 -13.46243 -13.39270 -13.31601 -13.12529 -13.02704 -12.79511 -12.42997 -12.30974 -12.19733 -12.09355 -12.02259 -11.48952 -11.21559 -10.87755 -10.83150 -10.61286 -10.27631 -9.91994 -9.45432 -9.19261 -9.11102 -8.23293 -6.40156 -0.25572 0.46354 0.61401 1.17117 1.28836 1.43299 1.45518 1.45729 1.53626 1.93589 2.17656 2.40767 2.44855 3.03148 3.23188 3.45026 3.79868 3.86196 3.96351 4.16784 4.24301 4.28389 4.32023 4.40748 4.44350 4.47427 4.61220 4.63068 4.71019 4.73042 4.78847 5.06979 5.08570 5.11583 5.17191 5.36276 5.41256 5.46342 5.51088 5.60033 5.79606 5.82446 6.07049 6.36654 6.65500 6.76798 7.30487 7.33296 7.41952 8.81900 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.012823 B = 0.003505 C = 0.002862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2183.024213 B = 7986.292218 C = 9782.368863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.355 5.355 3 C 0.117 3.883 4 C -0.311 4.311 5 C 0.585 3.415 6 O -0.573 6.573 7 N -0.609 5.609 8 C 0.096 3.904 9 C -0.112 4.112 10 C 0.232 3.768 11 O -0.590 6.590 12 C -0.557 4.557 13 H 0.071 0.929 14 C 0.026 3.974 15 N -0.918 5.918 16 Si 0.963 3.037 17 H -0.270 1.270 18 H -0.287 1.287 19 H -0.268 1.268 20 C 0.112 3.888 21 C 0.176 3.824 22 C -0.159 4.159 23 C -0.109 4.109 24 C -0.146 4.146 25 C -0.237 4.237 26 S 0.183 5.817 27 N -0.295 5.295 28 H 0.095 0.905 29 H 0.100 0.900 30 H 0.128 0.872 31 H 0.231 0.769 32 H 0.081 0.919 33 H 0.099 0.901 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.377 0.623 37 H 0.270 0.730 38 H 0.044 0.956 39 H 0.039 0.961 40 H 0.150 0.850 41 H 0.170 0.830 42 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.453 -12.524 3.864 19.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.134 5.134 3 C -0.033 4.033 4 C -0.327 4.327 5 C 0.376 3.624 6 O -0.455 6.455 7 N -0.341 5.341 8 C -0.026 4.026 9 C -0.149 4.149 10 C 0.192 3.808 11 O -0.399 6.399 12 C -0.595 4.595 13 H 0.090 0.910 14 C -0.174 4.174 15 N -0.558 5.558 16 Si 0.788 3.212 17 H -0.196 1.196 18 H -0.213 1.213 19 H -0.193 1.193 20 C -0.011 4.011 21 C 0.008 3.992 22 C -0.279 4.279 23 C -0.144 4.144 24 C -0.176 4.176 25 C -0.374 4.374 26 S 0.450 5.550 27 N -0.117 5.117 28 H 0.114 0.886 29 H 0.119 0.881 30 H 0.146 0.854 31 H 0.247 0.753 32 H 0.099 0.901 33 H 0.116 0.884 34 H 0.108 0.892 35 H 0.109 0.891 36 H 0.227 0.773 37 H 0.079 0.921 38 H 0.062 0.938 39 H 0.058 0.942 40 H 0.168 0.832 41 H 0.187 0.813 42 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -14.816 -12.684 2.954 19.726 hybrid contribution 1.754 0.406 0.855 1.993 sum -13.062 -12.278 3.809 18.327 Atomic orbital electron populations 1.22539 0.70085 1.07201 1.05708 1.48613 1.08792 1.02275 1.53684 1.24111 0.89270 0.95302 0.94629 1.21253 0.93538 0.92429 1.25449 1.17334 0.88199 0.80595 0.76240 1.90695 1.27705 1.73359 1.53783 1.48522 1.09680 1.04269 1.71629 1.22513 0.85601 0.92310 1.02165 1.22649 0.96126 0.94343 1.01824 1.19880 0.92469 0.89823 0.78653 1.86040 1.35459 1.96799 1.21599 1.21841 0.98598 1.07946 1.31110 0.91048 1.25821 0.98161 0.99154 0.94297 1.69684 1.14412 1.36839 1.34855 0.85529 0.77295 0.79666 0.78676 1.19555 1.21313 1.19325 1.22835 0.89585 0.89700 0.98998 1.20826 0.90629 0.90171 0.97567 1.21934 0.96543 0.99054 1.10321 1.20515 0.99823 0.93118 1.00944 1.20226 0.92275 1.02820 1.02323 1.26546 1.05673 0.98596 1.06571 1.85407 1.05713 1.14849 1.48991 1.77326 1.00477 1.08221 1.25693 0.88607 0.88097 0.85354 0.75338 0.90059 0.88352 0.89210 0.89053 0.77276 0.92077 0.93817 0.94205 0.83215 0.81287 0.79514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.75 11.39 127.77 1.46 2.20 16 2 N -0.35 -7.68 3.95 -367.93 -1.45 -9.13 16 3 C 0.12 2.80 9.92 84.28 0.84 3.64 16 4 C -0.31 -10.73 6.29 -18.76 -0.12 -10.85 16 5 C 0.59 24.66 7.84 86.60 0.68 25.34 16 6 O -0.57 -27.75 13.19 -4.13 -0.05 -27.81 16 7 N -0.61 -24.74 3.32 -815.48 -2.71 -27.45 16 8 C 0.10 2.86 5.00 86.73 0.43 3.30 16 9 C -0.11 -3.90 6.12 31.78 0.19 -3.71 16 10 C 0.23 10.94 0.89 -10.07 -0.01 10.93 16 11 O -0.59 -30.10 13.19 -148.98 -1.97 -32.07 16 12 C -0.56 -28.33 8.25 25.60 0.21 -28.11 16 13 H 0.07 3.47 7.76 -2.91 -0.02 3.44 16 14 C 0.03 1.36 5.30 84.66 0.45 1.80 16 15 N -0.92 -50.01 10.72 21.45 0.23 -49.78 16 16 Si 0.96 41.33 29.54 68.60 2.03 43.35 16 17 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 18 H -0.29 -12.35 7.11 99.48 0.71 -11.64 16 19 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 20 C 0.11 5.44 5.65 86.93 0.49 5.93 16 21 C 0.18 6.08 7.24 43.91 0.32 6.40 16 22 C -0.16 -5.46 6.11 24.00 0.15 -5.31 16 23 C -0.11 -3.10 10.10 21.42 0.22 -2.89 16 24 C -0.15 -3.55 10.16 21.15 0.21 -3.34 16 25 C -0.24 -6.23 11.22 66.77 0.75 -5.48 16 26 S 0.18 6.46 19.79 -56.49 -1.12 5.34 16 27 N -0.30 -8.73 12.51 -44.75 -0.56 -9.29 16 28 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.10 0.79 8.14 -2.38 -0.02 0.77 16 30 H 0.13 0.29 8.13 -2.38 -0.02 0.27 16 31 H 0.23 3.69 4.45 -2.91 -0.01 3.68 16 32 H 0.08 2.11 6.86 -2.39 -0.02 2.10 16 33 H 0.10 2.12 7.01 -2.39 -0.02 2.11 16 34 H 0.09 2.88 8.14 -2.39 -0.02 2.86 16 35 H 0.09 2.93 8.01 -2.39 -0.02 2.91 16 36 H 0.38 20.59 6.93 -74.06 -0.51 20.08 16 37 H 0.27 14.18 8.31 -92.71 -0.77 13.41 16 38 H 0.04 2.20 8.03 -2.39 -0.02 2.19 16 39 H 0.04 2.25 7.64 -2.39 -0.02 2.23 16 40 H 0.15 3.69 8.06 -2.91 -0.02 3.67 16 41 H 0.17 2.85 8.06 -2.91 -0.02 2.83 16 42 H 0.19 3.74 8.06 -2.91 -0.02 3.71 16 Total: -1.00 -74.06 360.77 1.22 -72.83 By element: Atomic # 1 Polarization: 33.59 SS G_CDS: 0.56 Total: 34.15 kcal Atomic # 6 Polarization: -6.42 SS G_CDS: 6.27 Total: -0.15 kcal Atomic # 7 Polarization: -91.16 SS G_CDS: -4.50 Total: -95.65 kcal Atomic # 8 Polarization: -57.85 SS G_CDS: -2.02 Total: -59.87 kcal Atomic # 14 Polarization: 41.33 SS G_CDS: 2.03 Total: 43.35 kcal Atomic # 16 Polarization: 6.46 SS G_CDS: -1.12 Total: 5.34 kcal Total: -74.06 1.22 -72.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592847000.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.555 kcal (2) G-P(sol) polarization free energy of solvation -74.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.832 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds