Wall clock time and date at job start Wed Apr 1 2020 04:28:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42897 * 113.99986 * 2 1 4 4 C 1.53001 * 109.47083 * 179.97438 * 3 2 1 5 5 N 1.46507 * 109.46916 * 65.00140 * 4 3 2 6 6 C 1.46493 * 120.00044 * 283.17919 * 5 4 3 7 7 C 1.50696 * 109.47551 * 269.99556 * 6 5 4 8 8 H 1.08000 * 119.99654 * 0.02562 * 7 6 5 9 9 C 1.37871 * 120.00721 * 180.02562 * 7 6 5 10 10 N 1.31519 * 119.99478 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 120.00564 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.47184 * 59.99401 * 11 9 7 13 13 H 1.48499 * 109.47310 * 179.97438 * 11 9 7 14 14 H 1.48504 * 109.46637 * 300.00013 * 11 9 7 15 15 C 1.34780 * 119.99648 * 103.17744 * 5 4 3 16 16 O 1.21588 * 119.99610 * 186.92494 * 15 5 4 17 17 C 1.47532 * 120.00138 * 6.92292 * 15 5 4 18 18 C 1.39713 * 120.18982 * 326.48503 * 17 15 5 19 19 C 1.37796 * 119.90697 * 180.25565 * 18 17 15 20 20 C 1.38551 * 120.29500 * 359.47103 * 19 18 17 21 21 C 1.38053 * 120.39372 * 0.25467 * 20 19 18 22 22 C 1.50699 * 119.95626 * 179.97438 * 21 20 19 23 23 F 1.39896 * 109.46981 * 0.02562 * 22 21 20 24 24 F 1.39900 * 109.46772 * 120.00211 * 22 21 20 25 25 F 1.39898 * 109.47073 * 240.00047 * 22 21 20 26 26 C 1.38712 * 120.08439 * 0.02562 * 21 20 19 27 27 O 1.35647 * 120.15151 * 179.97438 * 26 21 20 28 28 H 1.09002 * 109.47235 * 299.99854 * 1 2 3 29 29 H 1.08996 * 109.47127 * 59.99544 * 1 2 3 30 30 H 1.09004 * 109.47487 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46741 * 60.00852 * 3 2 1 32 32 H 1.08993 * 109.47729 * 300.00304 * 3 2 1 33 33 H 1.09000 * 109.47127 * 305.01094 * 4 3 2 34 34 H 1.08992 * 109.47673 * 185.00278 * 4 3 2 35 35 H 1.08996 * 109.47495 * 30.00209 * 6 5 4 36 36 H 1.09012 * 109.47108 * 149.99699 * 6 5 4 37 37 H 0.97005 * 119.99932 * 180.02562 * 10 9 7 38 38 H 1.07997 * 120.04640 * 359.97438 * 18 17 15 39 39 H 1.07998 * 119.85028 * 179.74894 * 19 18 17 40 40 H 1.07998 * 119.80046 * 180.28080 * 20 19 18 41 41 H 0.96699 * 114.00288 * 89.99430 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5639 -1.2510 6 6 3.8336 -0.8814 -1.4420 7 6 5.0767 -1.5785 -0.9523 8 1 5.8917 -1.0024 -0.5396 9 6 5.1737 -2.9515 -1.0311 10 7 4.1814 -3.6529 -1.5342 11 14 6.7143 -3.8155 -0.4234 12 1 6.9086 -3.5243 1.0197 13 1 6.5693 -5.2806 -0.6172 14 1 7.8897 -3.3283 -1.1892 15 6 4.5141 1.3228 -2.2266 16 8 4.7639 0.8319 -3.3105 17 6 4.7993 2.7490 -1.9792 18 6 3.9724 3.4948 -1.1354 19 6 4.2412 4.8278 -0.9127 20 6 5.3348 5.4302 -1.5133 21 6 6.1633 4.7035 -2.3448 22 6 7.3498 5.3687 -2.9934 23 9 7.4021 6.7114 -2.6039 24 9 8.5237 4.7214 -2.5933 25 9 7.2252 5.2908 -4.3846 26 6 5.9044 3.3620 -2.5848 27 8 6.7173 2.6468 -3.4020 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 1.6887 1.8463 0.8901 32 1 1.6886 1.8464 -0.8899 33 1 3.8508 0.5683 0.8426 34 1 3.9785 2.1764 0.0903 35 1 2.9711 -1.2387 -0.8794 36 1 3.6904 -1.0955 -2.5013 37 1 4.2495 -4.6190 -1.5893 38 1 3.1212 3.0283 -0.6620 39 1 3.5990 5.4044 -0.2635 40 1 5.5405 6.4743 -1.3296 41 1 7.4550 2.2187 -2.9464 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594273503.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:28:59 Heat of formation + Delta-G solvation = -210.469242 kcal Electronic energy + Delta-G solvation = -31753.448122 eV Core-core repulsion = 26799.659030 eV Total energy + Delta-G solvation = -4953.789092 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.118 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.25035 -47.81010 -47.65626 -40.69030 -38.59660 -37.51866 -36.93482 -34.93724 -33.04766 -32.00719 -30.37888 -29.76941 -27.24107 -26.32697 -25.83581 -24.16541 -22.86442 -22.30805 -22.13639 -19.65273 -18.72122 -18.55259 -18.22824 -18.04733 -16.66654 -16.54265 -16.34736 -16.06384 -15.71867 -15.32451 -15.00340 -14.80940 -14.67410 -14.52086 -14.42083 -14.25783 -14.13782 -13.85491 -13.84389 -13.76194 -13.44356 -12.93610 -12.81556 -12.46359 -12.20433 -12.01048 -11.88495 -11.77013 -11.37345 -11.30452 -10.94204 -10.92686 -10.71531 -10.40965 -10.14068 -9.65558 -9.47279 -9.37843 -9.04313 -8.92918 -8.36098 -7.68010 -5.98835 -4.03236 0.52898 0.76496 2.50262 2.86592 3.33523 3.38249 3.39246 3.49905 3.59075 3.77506 3.92086 3.94862 3.99022 4.30905 4.46746 4.59009 4.60366 4.87084 4.94365 5.17359 5.25145 5.32223 5.34896 5.35595 5.41704 5.48039 5.51846 5.55796 5.76285 5.85009 5.87770 5.94767 6.16468 6.29310 7.21745 7.35930 7.50439 7.52792 7.61892 7.98822 8.29203 8.36959 8.87132 9.04025 9.60203 11.09180 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.010903 B = 0.003879 C = 0.003092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2567.387882 B = 7216.801159 C = 9054.408635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.363 6.363 3 C 0.040 3.960 4 C 0.079 3.921 5 N -0.580 5.580 6 C 0.245 3.755 7 C -0.528 4.528 8 H 0.054 0.946 9 C 0.063 3.937 10 N -0.891 5.891 11 Si 0.896 3.104 12 H -0.278 1.278 13 H -0.286 1.286 14 H -0.277 1.277 15 C 0.542 3.458 16 O -0.512 6.512 17 C -0.147 4.147 18 C -0.070 4.070 19 C -0.140 4.140 20 C -0.046 4.046 21 C -0.226 4.226 22 C 0.518 3.482 23 F -0.180 7.180 24 F -0.177 7.177 25 F -0.169 7.169 26 C 0.213 3.787 27 O -0.470 6.470 28 H 0.035 0.965 29 H 0.036 0.964 30 H 0.086 0.914 31 H 0.055 0.945 32 H 0.047 0.953 33 H 0.090 0.910 34 H 0.104 0.896 35 H 0.059 0.941 36 H 0.041 0.959 37 H 0.263 0.737 38 H 0.158 0.842 39 H 0.142 0.858 40 H 0.143 0.857 41 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.133 20.171 5.154 20.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.281 6.281 3 C -0.038 4.038 4 C -0.045 4.045 5 N -0.312 5.312 6 C 0.126 3.874 7 C -0.567 4.567 8 H 0.072 0.928 9 C -0.139 4.139 10 N -0.530 5.530 11 Si 0.723 3.277 12 H -0.203 1.203 13 H -0.212 1.212 14 H -0.203 1.203 15 C 0.328 3.672 16 O -0.388 6.388 17 C -0.151 4.151 18 C -0.088 4.088 19 C -0.158 4.158 20 C -0.064 4.064 21 C -0.228 4.228 22 C 0.464 3.536 23 F -0.161 7.161 24 F -0.159 7.159 25 F -0.150 7.150 26 C 0.165 3.835 27 O -0.281 6.281 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.104 0.896 31 H 0.073 0.927 32 H 0.066 0.934 33 H 0.108 0.892 34 H 0.122 0.878 35 H 0.077 0.923 36 H 0.059 0.941 37 H 0.072 0.928 38 H 0.175 0.825 39 H 0.160 0.840 40 H 0.161 0.839 41 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -2.285 19.667 4.058 20.211 hybrid contribution 1.138 -0.341 0.656 1.357 sum -1.147 19.326 4.714 19.925 Atomic orbital electron populations 1.22734 0.81976 1.02843 0.99092 1.88179 1.18805 1.26059 1.95075 1.23071 0.94919 0.86223 0.99596 1.22302 0.91883 1.00362 0.89942 1.48126 1.58630 1.10806 1.13593 1.19493 0.97731 0.71269 0.98868 1.21382 1.02167 0.91750 1.41419 0.92821 1.24890 0.96418 0.97268 0.95310 1.69935 1.31330 1.06711 1.45044 0.86608 0.83523 0.78451 0.79084 1.20339 1.21199 1.20294 1.17830 0.79810 0.84333 0.85258 1.90825 1.51573 1.73040 1.23364 1.20793 0.97973 0.96727 0.99568 1.22227 0.99065 0.93823 0.93707 1.21106 0.98172 0.94630 1.01906 1.21026 0.92707 1.00148 0.92566 1.20351 0.99796 0.95909 1.06708 1.17998 0.82658 0.76007 0.76972 1.93146 1.96664 1.35441 1.90898 1.93204 1.50808 1.81340 1.90519 1.93253 1.95907 1.95929 1.29882 1.18009 0.90555 0.88029 0.86865 1.84798 1.42182 1.67675 1.33478 0.94658 0.94507 0.89568 0.92704 0.93441 0.89195 0.87823 0.92271 0.94112 0.92757 0.82499 0.84047 0.83915 0.73821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.01 101.05 1.11 1.49 16 2 O -0.36 -6.10 8.44 -35.23 -0.30 -6.40 16 3 C 0.04 0.53 5.22 37.16 0.19 0.72 16 4 C 0.08 1.21 5.40 -4.04 -0.02 1.19 16 5 N -0.58 -12.05 2.48 -176.29 -0.44 -12.49 16 6 C 0.24 6.39 5.06 -5.20 -0.03 6.37 16 7 C -0.53 -14.87 9.39 -34.44 -0.32 -15.19 16 8 H 0.05 1.49 7.81 -52.49 -0.41 1.08 16 9 C 0.06 1.81 5.46 -17.82 -0.10 1.71 16 10 N -0.89 -26.60 13.29 55.43 0.74 -25.87 16 11 Si 0.90 21.80 29.54 -169.99 -5.02 16.78 16 12 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 13 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 14 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 15 C 0.54 11.33 7.28 -12.47 -0.09 11.24 16 16 O -0.51 -13.09 15.44 -12.90 -0.20 -13.29 16 17 C -0.15 -2.32 5.54 -104.85 -0.58 -2.90 16 18 C -0.07 -0.80 7.43 -39.19 -0.29 -1.09 16 19 C -0.14 -1.21 10.02 -39.63 -0.40 -1.61 16 20 C -0.05 -0.44 9.42 -39.53 -0.37 -0.81 16 21 C -0.23 -2.80 5.38 -104.52 -0.56 -3.36 16 22 C 0.52 6.36 2.99 36.00 0.11 6.47 16 23 F -0.18 -1.96 15.96 2.25 0.04 -1.92 16 24 F -0.18 -2.21 16.95 2.25 0.04 -2.18 16 25 F -0.17 -2.36 16.95 2.25 0.04 -2.32 16 26 C 0.21 3.23 6.56 -38.70 -0.25 2.98 16 27 O -0.47 -7.74 11.01 -36.83 -0.41 -8.15 16 28 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.05 0.59 7.36 -51.93 -0.38 0.21 16 33 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 34 H 0.10 1.24 3.81 -52.33 -0.20 1.04 16 35 H 0.06 1.59 5.97 -51.93 -0.31 1.28 16 36 H 0.04 1.22 7.34 -51.92 -0.38 0.84 16 37 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 38 H 0.16 1.57 3.34 -52.49 -0.18 1.39 16 39 H 0.14 0.71 8.06 -52.49 -0.42 0.29 16 40 H 0.14 0.99 7.13 -52.49 -0.37 0.62 16 41 H 0.40 5.25 9.06 45.56 0.41 5.66 16 LS Contribution 356.44 15.07 5.37 5.37 Total: -1.00 -35.77 356.44 -5.24 -41.00 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: -3.49 Total: 2.23 kcal Atomic # 6 Polarization: 8.81 SS G_CDS: -1.60 Total: 7.21 kcal Atomic # 7 Polarization: -38.65 SS G_CDS: 0.30 Total: -38.35 kcal Atomic # 8 Polarization: -26.93 SS G_CDS: -0.90 Total: -27.83 kcal Atomic # 9 Polarization: -6.53 SS G_CDS: 0.11 Total: -6.42 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -35.77 -5.24 -41.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594273503.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -169.468 kcal (2) G-P(sol) polarization free energy of solvation -35.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -205.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -210.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds