Wall clock time and date at job start Wed Apr 1 2020 04:28:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42897 * 113.99986 * 2 1 4 4 C 1.53001 * 109.47083 * 179.97438 * 3 2 1 5 5 N 1.46507 * 109.46916 * 65.00140 * 4 3 2 6 6 C 1.46493 * 120.00044 * 283.17919 * 5 4 3 7 7 C 1.50696 * 109.47551 * 269.99556 * 6 5 4 8 8 H 1.08000 * 119.99654 * 0.02562 * 7 6 5 9 9 C 1.37871 * 120.00721 * 180.02562 * 7 6 5 10 10 N 1.31519 * 119.99478 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 120.00564 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.47184 * 59.99401 * 11 9 7 13 13 H 1.48499 * 109.47310 * 179.97438 * 11 9 7 14 14 H 1.48504 * 109.46637 * 300.00013 * 11 9 7 15 15 C 1.34780 * 119.99648 * 103.17744 * 5 4 3 16 16 O 1.21588 * 119.99610 * 186.92494 * 15 5 4 17 17 C 1.47532 * 120.00138 * 6.92292 * 15 5 4 18 18 C 1.39713 * 120.18982 * 326.48503 * 17 15 5 19 19 C 1.37796 * 119.90697 * 180.25565 * 18 17 15 20 20 C 1.38551 * 120.29500 * 359.47103 * 19 18 17 21 21 C 1.38053 * 120.39372 * 0.25467 * 20 19 18 22 22 C 1.50699 * 119.95626 * 179.97438 * 21 20 19 23 23 F 1.39896 * 109.46981 * 0.02562 * 22 21 20 24 24 F 1.39900 * 109.46772 * 120.00211 * 22 21 20 25 25 F 1.39898 * 109.47073 * 240.00047 * 22 21 20 26 26 C 1.38712 * 120.08439 * 0.02562 * 21 20 19 27 27 O 1.35647 * 120.15151 * 179.97438 * 26 21 20 28 28 H 1.09002 * 109.47235 * 299.99854 * 1 2 3 29 29 H 1.08996 * 109.47127 * 59.99544 * 1 2 3 30 30 H 1.09004 * 109.47487 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46741 * 60.00852 * 3 2 1 32 32 H 1.08993 * 109.47729 * 300.00304 * 3 2 1 33 33 H 1.09000 * 109.47127 * 305.01094 * 4 3 2 34 34 H 1.08992 * 109.47673 * 185.00278 * 4 3 2 35 35 H 1.08996 * 109.47495 * 30.00209 * 6 5 4 36 36 H 1.09012 * 109.47108 * 149.99699 * 6 5 4 37 37 H 0.97005 * 119.99932 * 180.02562 * 10 9 7 38 38 H 1.07997 * 120.04640 * 359.97438 * 18 17 15 39 39 H 1.07998 * 119.85028 * 179.74894 * 19 18 17 40 40 H 1.07998 * 119.80046 * 180.28080 * 20 19 18 41 41 H 0.96699 * 114.00288 * 89.99430 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5639 -1.2510 6 6 3.8336 -0.8814 -1.4420 7 6 5.0767 -1.5785 -0.9523 8 1 5.8917 -1.0024 -0.5396 9 6 5.1737 -2.9515 -1.0311 10 7 4.1814 -3.6529 -1.5342 11 14 6.7143 -3.8155 -0.4234 12 1 6.9086 -3.5243 1.0197 13 1 6.5693 -5.2806 -0.6172 14 1 7.8897 -3.3283 -1.1892 15 6 4.5141 1.3228 -2.2266 16 8 4.7639 0.8319 -3.3105 17 6 4.7993 2.7490 -1.9792 18 6 3.9724 3.4948 -1.1354 19 6 4.2412 4.8278 -0.9127 20 6 5.3348 5.4302 -1.5133 21 6 6.1633 4.7035 -2.3448 22 6 7.3498 5.3687 -2.9934 23 9 7.4021 6.7114 -2.6039 24 9 8.5237 4.7214 -2.5933 25 9 7.2252 5.2908 -4.3846 26 6 5.9044 3.3620 -2.5848 27 8 6.7173 2.6468 -3.4020 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 1.6887 1.8463 0.8901 32 1 1.6886 1.8464 -0.8899 33 1 3.8508 0.5683 0.8426 34 1 3.9785 2.1764 0.0903 35 1 2.9711 -1.2387 -0.8794 36 1 3.6904 -1.0955 -2.5013 37 1 4.2495 -4.6190 -1.5893 38 1 3.1212 3.0283 -0.6620 39 1 3.5990 5.4044 -0.2635 40 1 5.5405 6.4743 -1.3296 41 1 7.4550 2.2187 -2.9464 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594273503.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:28:58 Heat of formation + Delta-G solvation = -236.194599 kcal Electronic energy + Delta-G solvation = -31754.563657 eV Core-core repulsion = 26799.659030 eV Total energy + Delta-G solvation = -4954.904627 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.118 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -51.21108 -48.73436 -48.66908 -41.88964 -39.91744 -38.79949 -38.01683 -36.52628 -34.95007 -33.32384 -31.40958 -31.13939 -29.04975 -27.38170 -26.85340 -25.74073 -24.23521 -23.55052 -23.27117 -20.94774 -19.77003 -19.53427 -19.29637 -19.20947 -18.62056 -17.79229 -17.66791 -17.26309 -16.82218 -16.67215 -16.52705 -16.00313 -15.96378 -15.66579 -15.50193 -15.36924 -15.24523 -15.10094 -14.83976 -14.83485 -14.69254 -14.32899 -14.02255 -13.78136 -13.50885 -13.35871 -13.08775 -13.05444 -12.88139 -12.72743 -12.55945 -12.44388 -12.16774 -11.96237 -11.83795 -11.70370 -10.75889 -10.63196 -10.47841 -10.28913 -9.95547 -9.41876 -8.18177 -6.32641 -0.41651 -0.21160 1.36180 1.40712 1.47545 1.53259 1.74588 2.15515 2.41500 2.41893 2.61977 2.86660 2.91605 3.02089 3.12342 3.33599 3.45010 3.80856 3.94163 4.09869 4.11784 4.22878 4.32918 4.36613 4.42850 4.50431 4.55370 4.63235 4.86779 4.90471 4.94598 4.99848 5.10152 5.26368 5.35311 5.51268 5.56352 5.87700 6.10906 6.36186 6.45609 6.72257 6.77211 7.26845 7.42293 8.88940 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.010903 B = 0.003879 C = 0.003092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2567.387882 B = 7216.801159 C = 9054.408635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.413 6.413 3 C 0.038 3.962 4 C 0.072 3.928 5 N -0.586 5.586 6 C 0.265 3.735 7 C -0.544 4.544 8 H 0.052 0.948 9 C 0.008 3.992 10 N -0.927 5.927 11 Si 0.966 3.034 12 H -0.260 1.260 13 H -0.279 1.279 14 H -0.278 1.278 15 C 0.536 3.464 16 O -0.579 6.579 17 C -0.175 4.175 18 C -0.065 4.065 19 C -0.111 4.111 20 C -0.029 4.029 21 C -0.230 4.230 22 C 0.519 3.481 23 F -0.167 7.167 24 F -0.182 7.182 25 F -0.183 7.183 26 C 0.189 3.811 27 O -0.496 6.496 28 H 0.068 0.932 29 H 0.043 0.957 30 H 0.076 0.924 31 H 0.107 0.893 32 H 0.055 0.945 33 H 0.076 0.924 34 H 0.145 0.855 35 H 0.048 0.952 36 H -0.015 1.015 37 H 0.265 0.735 38 H 0.174 0.826 39 H 0.198 0.802 40 H 0.180 0.820 41 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.492 23.771 8.161 25.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.332 6.332 3 C -0.039 4.039 4 C -0.050 4.050 5 N -0.315 5.315 6 C 0.144 3.856 7 C -0.582 4.582 8 H 0.070 0.930 9 C -0.191 4.191 10 N -0.567 5.567 11 Si 0.790 3.210 12 H -0.184 1.184 13 H -0.205 1.205 14 H -0.203 1.203 15 C 0.325 3.675 16 O -0.460 6.460 17 C -0.178 4.178 18 C -0.082 4.082 19 C -0.129 4.129 20 C -0.046 4.046 21 C -0.232 4.232 22 C 0.465 3.535 23 F -0.149 7.149 24 F -0.163 7.163 25 F -0.164 7.164 26 C 0.142 3.858 27 O -0.309 6.309 28 H 0.086 0.914 29 H 0.062 0.938 30 H 0.095 0.905 31 H 0.125 0.875 32 H 0.073 0.927 33 H 0.094 0.906 34 H 0.162 0.838 35 H 0.066 0.934 36 H 0.004 0.996 37 H 0.074 0.926 38 H 0.191 0.809 39 H 0.215 0.785 40 H 0.198 0.802 41 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -2.664 23.315 7.120 24.523 hybrid contribution 1.202 -1.328 -0.266 1.810 sum -1.462 21.987 6.855 23.077 Atomic orbital electron populations 1.22864 0.80072 1.02985 1.00970 1.88099 1.21128 1.28502 1.95503 1.23220 0.92845 0.85469 1.02335 1.22743 0.94057 1.01570 0.86597 1.48048 1.58823 1.08907 1.15767 1.18838 0.96764 0.75010 0.94958 1.21693 1.02743 0.92404 1.41385 0.92950 1.25835 0.99805 0.98100 0.95331 1.70075 1.33501 1.07038 1.46075 0.85500 0.78959 0.77252 0.79268 1.18417 1.20461 1.20311 1.18627 0.78205 0.86540 0.84104 1.90769 1.54191 1.75061 1.25996 1.20399 1.00436 0.93807 1.03204 1.22410 0.98432 0.95025 0.92376 1.21674 0.97506 0.93119 1.00554 1.21595 0.91440 1.01503 0.90108 1.20406 1.00525 0.94740 1.07522 1.18005 0.82644 0.76489 0.76345 1.93166 1.96617 1.34402 1.90669 1.93196 1.51108 1.81536 1.90455 1.93226 1.95968 1.96050 1.31174 1.18253 0.90689 0.89177 0.87658 1.84766 1.42843 1.68349 1.34929 0.91384 0.93826 0.90524 0.87534 0.92686 0.90578 0.83849 0.93371 0.99644 0.92578 0.80887 0.78496 0.80229 0.73252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.65 11.01 113.37 1.25 1.90 16 2 O -0.41 -13.81 8.44 -148.98 -1.26 -15.07 16 3 C 0.04 0.92 5.22 71.98 0.38 1.30 16 4 C 0.07 2.13 5.40 86.38 0.47 2.59 16 5 N -0.59 -25.38 2.48 -829.93 -2.06 -27.44 16 6 C 0.27 14.84 5.06 85.63 0.43 15.27 16 7 C -0.54 -32.07 9.39 25.60 0.24 -31.83 16 8 H 0.05 3.01 7.81 -2.91 -0.02 2.99 16 9 C 0.01 0.48 5.46 84.65 0.46 0.94 16 10 N -0.93 -57.76 13.29 21.45 0.28 -57.47 16 11 Si 0.97 45.73 29.54 68.60 2.03 47.76 16 12 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 13 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 14 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 15 C 0.54 23.64 7.28 86.69 0.63 24.27 16 16 O -0.58 -32.22 15.44 13.40 0.21 -32.01 16 17 C -0.17 -5.46 5.54 -20.01 -0.11 -5.58 16 18 C -0.06 -1.23 7.43 22.52 0.17 -1.07 16 19 C -0.11 -1.21 10.02 22.24 0.22 -0.99 16 20 C -0.03 -0.39 9.42 22.30 0.21 -0.18 16 21 C -0.23 -5.18 5.38 -19.80 -0.11 -5.29 16 22 C 0.52 11.94 2.99 71.24 0.21 12.16 16 23 F -0.17 -3.11 15.96 44.97 0.72 -2.39 16 24 F -0.18 -4.41 16.95 44.97 0.76 -3.65 16 25 F -0.18 -5.06 16.95 44.97 0.76 -4.30 16 26 C 0.19 5.75 6.56 22.84 0.15 5.90 16 27 O -0.50 -17.47 11.01 -72.22 -0.80 -18.27 16 28 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.08 1.92 8.14 -2.38 -0.02 1.90 16 31 H 0.11 1.50 8.14 -2.38 -0.02 1.48 16 32 H 0.06 1.24 7.36 -2.39 -0.02 1.22 16 33 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 34 H 0.14 3.01 3.81 -2.76 -0.01 3.00 16 35 H 0.05 2.78 5.97 -2.39 -0.01 2.77 16 36 H -0.01 -0.96 7.34 -2.38 -0.02 -0.98 16 37 H 0.27 15.52 8.31 -92.70 -0.77 14.75 16 38 H 0.17 2.70 3.34 -2.91 -0.01 2.69 16 39 H 0.20 0.15 8.06 -2.91 -0.02 0.13 16 40 H 0.18 1.24 7.13 -2.91 -0.02 1.22 16 41 H 0.41 11.83 9.06 -74.06 -0.67 11.16 16 Total: -1.00 -87.51 356.44 5.69 -81.82 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: 0.45 Total: 11.61 kcal Atomic # 6 Polarization: 14.80 SS G_CDS: 4.60 Total: 19.41 kcal Atomic # 7 Polarization: -83.13 SS G_CDS: -1.78 Total: -84.91 kcal Atomic # 8 Polarization: -63.51 SS G_CDS: -1.85 Total: -65.35 kcal Atomic # 9 Polarization: -12.58 SS G_CDS: 2.24 Total: -10.33 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.76 kcal Total: -87.51 5.69 -81.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594273503.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -154.376 kcal (2) G-P(sol) polarization free energy of solvation -87.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -241.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -236.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds