Wall clock time and date at job start Wed Apr 1 2020 04:14:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46501 * 119.99572 * 2 1 4 4 C 1.53004 * 109.47039 * 274.99740 * 3 2 1 5 5 C 1.50700 * 109.47156 * 180.02562 * 4 3 2 6 6 C 1.38388 * 119.99966 * 125.00565 * 5 4 3 7 7 N 1.32135 * 119.99496 * 179.97438 * 6 5 4 8 8 C 1.32153 * 120.00079 * 359.97438 * 7 6 5 9 9 C 1.38345 * 119.99896 * 0.02562 * 8 7 6 10 10 N 1.32127 * 120.00087 * 304.72693 * 5 4 3 11 11 S 1.65602 * 120.00343 * 179.97438 * 2 1 3 12 12 O 1.42098 * 106.40029 * 343.87757 * 11 2 1 13 13 O 1.42099 * 106.40114 * 210.95830 * 11 2 1 14 14 C 1.76193 * 107.21763 * 97.41952 * 11 2 1 15 15 C 1.37636 * 120.12912 * 113.71978 * 14 11 2 16 16 C 1.38614 * 120.25137 * 179.97438 * 15 14 11 17 17 C 1.38652 * 120.50136 * 0.02688 * 16 15 14 18 18 C 1.37603 * 120.24928 * 0.02562 * 17 16 15 19 19 C 1.40700 * 120.12932 * 293.44721 * 14 11 2 20 20 C 1.41395 * 120.24291 * 0.02562 * 19 14 11 21 21 H 1.08002 * 119.99479 * 326.72670 * 20 19 14 22 22 C 1.39943 * 120.00373 * 146.73883 * 20 19 14 23 23 N 1.30828 * 119.99695 * 349.95194 * 22 20 19 24 24 Si 1.86795 * 120.00277 * 169.95698 * 22 20 19 25 25 H 1.48500 * 109.47130 * 59.99594 * 24 22 20 26 26 H 1.48494 * 109.47309 * 179.97438 * 24 22 20 27 27 H 1.48507 * 109.47052 * 299.99963 * 24 22 20 28 28 H 1.09007 * 109.47338 * 275.17520 * 1 2 3 29 29 H 1.08996 * 109.47442 * 35.17520 * 1 2 3 30 30 H 1.09008 * 109.46903 * 155.18163 * 1 2 3 31 31 H 1.08997 * 109.47723 * 34.99890 * 3 2 1 32 32 H 1.09000 * 109.46861 * 155.00485 * 3 2 1 33 33 H 1.08996 * 109.47244 * 300.00120 * 4 3 2 34 34 H 1.09000 * 109.46685 * 60.00637 * 4 3 2 35 35 H 1.07994 * 120.00390 * 359.94864 * 6 5 4 36 36 H 1.07998 * 120.00128 * 180.02562 * 8 7 6 37 37 H 1.08006 * 119.99546 * 179.97438 * 9 8 7 38 38 H 1.08005 * 119.87324 * 0.02562 * 15 14 11 39 39 H 1.08004 * 119.75043 * 179.97438 * 16 15 14 40 40 H 1.08004 * 119.87525 * 179.97438 * 17 16 15 41 41 H 1.07992 * 120.12970 * 179.97438 * 18 17 16 42 42 H 0.97001 * 119.99511 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.3435 1.7733 -1.4371 5 6 3.0975 3.0781 -1.4371 6 6 4.2384 3.2180 -2.2077 7 7 4.8991 4.3623 -2.2081 8 6 4.4701 5.3733 -1.4731 9 6 3.3295 5.2333 -0.7028 10 7 2.6661 4.0904 -0.7058 11 16 2.2931 -1.4341 0.0006 12 8 1.3596 -2.4362 0.3796 13 8 3.5060 -1.1967 0.7018 14 6 2.7421 -1.7778 -1.6681 15 6 4.0669 -1.7773 -2.0412 16 6 4.4230 -2.0479 -3.3532 17 6 3.4516 -2.3213 -4.3040 18 6 2.1209 -2.3262 -3.9538 19 6 1.7481 -2.0595 -2.6232 20 6 0.3842 -2.0680 -2.2504 21 1 0.0969 -2.3924 -1.2611 22 6 -0.5934 -1.6564 -3.1633 23 7 -0.2408 -1.0811 -4.2841 24 14 -2.4016 -1.9282 -2.7814 25 1 -2.7560 -1.2128 -1.5293 26 1 -3.2276 -1.4066 -3.8997 27 1 -2.6586 -3.3809 -2.6112 28 1 -0.3634 0.0927 1.0235 29 1 -0.3634 0.8400 -0.5920 30 1 -0.3633 -0.9328 -0.4314 31 1 1.6500 2.0044 0.5894 32 1 3.1857 1.1178 0.4342 33 1 2.8909 1.0378 -2.0265 34 1 1.3552 1.9243 -1.8713 35 1 4.5890 2.3918 -2.8084 36 1 5.0099 6.3087 -1.4737 37 1 2.9791 6.0595 -0.1017 38 1 4.8320 -1.5661 -1.3087 39 1 5.4651 -2.0450 -3.6372 40 1 3.7404 -2.5303 -5.3235 41 1 1.3658 -2.5389 -4.6961 42 1 -0.9185 -0.7955 -4.9167 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601386215.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:14:22 Heat of formation + Delta-G solvation = -5.868190 kcal Electronic energy + Delta-G solvation = -29125.811878 eV Core-core repulsion = 25197.797316 eV Total energy + Delta-G solvation = -3928.014562 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.05437 -37.68037 -36.51657 -36.33999 -34.92849 -34.31422 -33.90556 -32.72297 -30.27696 -29.65742 -29.24704 -26.18332 -25.41425 -24.65276 -23.65034 -21.87631 -21.32837 -21.18777 -18.14542 -17.72220 -17.53003 -17.13947 -16.93038 -16.13784 -15.86754 -15.54935 -15.28651 -14.81046 -14.46928 -14.12344 -13.62711 -13.51804 -13.38232 -13.18954 -13.10285 -12.77203 -12.31475 -12.19529 -12.06821 -11.89528 -11.58865 -11.52635 -11.34551 -11.26917 -11.23057 -11.16406 -11.12820 -10.83644 -10.64563 -10.56458 -10.36388 -9.92206 -9.49403 -9.34446 -9.19689 -9.05956 -8.39783 -8.06201 -7.61857 -7.08333 -4.83268 0.77061 1.13191 1.45807 2.27852 2.67950 2.93135 2.97173 3.05441 3.66782 3.72597 3.78470 4.07949 4.27744 4.34671 4.48968 4.70061 4.81593 5.08823 5.18242 5.25584 5.30884 5.45871 5.47791 5.55538 5.76813 5.87823 5.98613 6.09408 6.12470 6.18014 6.27154 6.34446 6.47044 6.54053 6.61022 6.75396 6.91197 6.98873 7.20803 7.27052 7.28418 7.45732 7.64182 7.74243 7.78292 7.89342 8.29480 8.47657 8.59153 9.86186 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.010178 B = 0.004668 C = 0.004461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2750.287486 B = 5996.460500 C = 6274.868701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.993 5.993 3 C 0.134 3.866 4 C -0.093 4.093 5 C 0.098 3.902 6 C 0.056 3.944 7 N -0.437 5.437 8 C 0.032 3.968 9 C 0.051 3.949 10 N -0.438 5.438 11 S 2.702 3.298 12 O -0.972 6.972 13 O -0.996 6.996 14 C -0.772 4.772 15 C -0.006 4.006 16 C -0.244 4.244 17 C -0.077 4.077 18 C -0.152 4.152 19 C 0.198 3.802 20 C -0.483 4.483 21 H 0.117 0.883 22 C 0.083 3.917 23 N -0.781 5.781 24 Si 0.903 3.097 25 H -0.255 1.255 26 H -0.276 1.276 27 H -0.258 1.258 28 H 0.042 0.958 29 H 0.062 0.938 30 H 0.099 0.901 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.097 0.903 34 H 0.096 0.904 35 H 0.172 0.828 36 H 0.166 0.834 37 H 0.167 0.833 38 H 0.108 0.892 39 H 0.095 0.905 40 H 0.093 0.907 41 H 0.120 0.880 42 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.423 9.648 2.505 10.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.828 5.828 3 C 0.007 3.993 4 C -0.133 4.133 5 C -0.043 4.043 6 C -0.104 4.104 7 N -0.152 5.152 8 C -0.127 4.127 9 C -0.109 4.109 10 N -0.153 5.153 11 S 2.800 3.200 12 O -0.962 6.962 13 O -0.986 6.986 14 C -0.867 4.867 15 C -0.026 4.026 16 C -0.264 4.264 17 C -0.096 4.096 18 C -0.172 4.172 19 C 0.193 3.807 20 C -0.512 4.512 21 H 0.135 0.865 22 C -0.138 4.138 23 N -0.404 5.404 24 Si 0.727 3.273 25 H -0.179 1.179 26 H -0.201 1.201 27 H -0.182 1.182 28 H 0.060 0.940 29 H 0.080 0.920 30 H 0.117 0.883 31 H 0.103 0.897 32 H 0.102 0.898 33 H 0.115 0.885 34 H 0.115 0.885 35 H 0.189 0.811 36 H 0.183 0.817 37 H 0.184 0.816 38 H 0.126 0.874 39 H 0.113 0.887 40 H 0.112 0.888 41 H 0.138 0.862 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 1.455 9.290 3.083 9.896 hybrid contribution -0.703 0.277 -1.054 1.297 sum 0.752 9.567 2.029 9.808 Atomic orbital electron populations 1.21756 0.78396 1.05083 1.00431 1.57292 1.15059 1.20546 1.89869 1.21092 0.97409 0.85880 0.94916 1.21112 1.01454 0.90714 1.00014 1.22348 0.93941 0.95635 0.92355 1.23773 0.92712 0.96173 0.97760 1.68455 1.29717 0.99936 1.17055 1.23704 0.95954 0.98685 0.94389 1.23746 0.93276 0.96096 0.97804 1.68287 1.29982 0.99590 1.17463 1.01119 0.72009 0.72114 0.74779 1.93469 1.63166 1.56246 1.83340 1.93435 1.46579 1.85595 1.73019 1.29943 1.00917 1.32407 1.23468 1.20257 0.93597 0.93205 0.95551 1.20512 0.97427 1.14534 0.93932 1.20918 0.93989 0.97470 0.97209 1.21456 0.94340 1.03914 0.97514 1.16984 0.91171 0.82106 0.90430 1.20451 0.90752 1.37840 1.02117 0.86528 1.25941 1.02078 0.92052 0.93715 1.69770 1.37112 1.26001 1.07566 0.86407 0.80529 0.80799 0.79594 1.17881 1.20094 1.18187 0.93978 0.91959 0.88318 0.89722 0.89819 0.88486 0.88527 0.81061 0.81721 0.81603 0.87446 0.88668 0.88835 0.86236 0.90232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.51 9.94 59.85 0.59 2.11 16 2 N -0.99 -18.14 3.18 -121.75 -0.39 -18.52 16 3 C 0.13 2.14 5.56 -4.04 -0.02 2.12 16 4 C -0.09 -1.44 5.95 -27.88 -0.17 -1.61 16 5 C 0.10 1.41 6.17 -82.41 -0.51 0.90 16 6 C 0.06 0.78 10.85 -17.37 -0.19 0.59 16 7 N -0.44 -5.89 10.50 -13.06 -0.14 -6.03 16 8 C 0.03 0.34 11.22 -17.37 -0.20 0.15 16 9 C 0.05 0.54 11.22 -17.38 -0.20 0.35 16 10 N -0.44 -5.96 10.06 -9.29 -0.09 -6.05 16 11 S 2.70 58.13 5.10 -107.50 -0.55 57.59 16 12 O -0.97 -23.00 14.56 -57.17 -0.83 -23.83 16 13 O -1.00 -22.27 15.69 -57.17 -0.90 -23.16 16 14 C -0.77 -17.45 5.71 -38.87 -0.22 -17.68 16 15 C -0.01 -0.13 9.53 -39.66 -0.38 -0.51 16 16 C -0.24 -5.00 10.05 -39.29 -0.39 -5.40 16 17 C -0.08 -1.63 10.02 -39.66 -0.40 -2.03 16 18 C -0.15 -3.56 8.63 -38.87 -0.34 -3.89 16 19 C 0.20 4.72 5.50 -106.82 -0.59 4.13 16 20 C -0.48 -11.30 6.29 -37.74 -0.24 -11.54 16 21 H 0.12 2.77 4.12 -52.49 -0.22 2.55 16 22 C 0.08 1.82 5.24 -17.34 -0.09 1.73 16 23 N -0.78 -17.46 11.10 55.55 0.62 -16.84 16 24 Si 0.90 16.79 29.41 -169.99 -5.00 11.79 16 25 H -0.25 -4.52 7.11 56.52 0.40 -4.11 16 26 H -0.28 -5.00 7.11 56.52 0.40 -4.59 16 27 H -0.26 -4.90 7.11 56.52 0.40 -4.49 16 28 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.96 8.11 -51.93 -0.42 0.54 16 30 H 0.10 1.88 4.13 -51.92 -0.21 1.67 16 31 H 0.08 1.22 7.93 -51.93 -0.41 0.81 16 32 H 0.08 1.37 7.03 -51.93 -0.36 1.00 16 33 H 0.10 1.63 7.63 -51.93 -0.40 1.23 16 34 H 0.10 1.55 8.14 -51.93 -0.42 1.13 16 35 H 0.17 2.20 7.95 -52.49 -0.42 1.79 16 36 H 0.17 1.14 8.06 -52.49 -0.42 0.72 16 37 H 0.17 1.15 8.06 -52.48 -0.42 0.73 16 38 H 0.11 2.14 7.32 -52.48 -0.38 1.76 16 39 H 0.10 1.71 8.06 -52.48 -0.42 1.28 16 40 H 0.09 1.73 8.06 -52.48 -0.42 1.31 16 41 H 0.12 2.84 6.53 -52.49 -0.34 2.50 16 42 H 0.29 5.89 8.30 -40.82 -0.34 5.55 16 LS Contribution 360.39 15.07 5.43 5.43 Total: -1.00 -28.64 360.39 -10.01 -38.66 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: -4.84 Total: 11.55 kcal Atomic # 6 Polarization: -27.26 SS G_CDS: -3.32 Total: -30.59 kcal Atomic # 7 Polarization: -47.44 SS G_CDS: 0.00 Total: -47.44 kcal Atomic # 8 Polarization: -45.26 SS G_CDS: -1.73 Total: -46.99 kcal Atomic # 14 Polarization: 16.79 SS G_CDS: -5.00 Total: 11.79 kcal Atomic # 16 Polarization: 58.13 SS G_CDS: -0.55 Total: 57.59 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -28.64 -10.01 -38.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601386215.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.788 kcal (2) G-P(sol) polarization free energy of solvation -28.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds