Wall clock time and date at job start Wed Apr 1 2020 04:14:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46501 * 119.99572 * 2 1 4 4 C 1.53004 * 109.47039 * 274.99740 * 3 2 1 5 5 C 1.50700 * 109.47156 * 180.02562 * 4 3 2 6 6 C 1.38388 * 119.99966 * 125.00565 * 5 4 3 7 7 N 1.32135 * 119.99496 * 179.97438 * 6 5 4 8 8 C 1.32153 * 120.00079 * 359.97438 * 7 6 5 9 9 C 1.38345 * 119.99896 * 0.02562 * 8 7 6 10 10 N 1.32127 * 120.00087 * 304.72693 * 5 4 3 11 11 S 1.65602 * 120.00343 * 179.97438 * 2 1 3 12 12 O 1.42098 * 106.40029 * 343.87757 * 11 2 1 13 13 O 1.42099 * 106.40114 * 210.95830 * 11 2 1 14 14 C 1.76193 * 107.21763 * 97.41952 * 11 2 1 15 15 C 1.37636 * 120.12912 * 113.71978 * 14 11 2 16 16 C 1.38614 * 120.25137 * 179.97438 * 15 14 11 17 17 C 1.38652 * 120.50136 * 0.02688 * 16 15 14 18 18 C 1.37603 * 120.24928 * 0.02562 * 17 16 15 19 19 C 1.40700 * 120.12932 * 293.44721 * 14 11 2 20 20 C 1.41395 * 120.24291 * 0.02562 * 19 14 11 21 21 H 1.08002 * 119.99479 * 326.72670 * 20 19 14 22 22 C 1.39943 * 120.00373 * 146.73883 * 20 19 14 23 23 N 1.30828 * 119.99695 * 349.95194 * 22 20 19 24 24 Si 1.86795 * 120.00277 * 169.95698 * 22 20 19 25 25 H 1.48500 * 109.47130 * 59.99594 * 24 22 20 26 26 H 1.48494 * 109.47309 * 179.97438 * 24 22 20 27 27 H 1.48507 * 109.47052 * 299.99963 * 24 22 20 28 28 H 1.09007 * 109.47338 * 275.17520 * 1 2 3 29 29 H 1.08996 * 109.47442 * 35.17520 * 1 2 3 30 30 H 1.09008 * 109.46903 * 155.18163 * 1 2 3 31 31 H 1.08997 * 109.47723 * 34.99890 * 3 2 1 32 32 H 1.09000 * 109.46861 * 155.00485 * 3 2 1 33 33 H 1.08996 * 109.47244 * 300.00120 * 4 3 2 34 34 H 1.09000 * 109.46685 * 60.00637 * 4 3 2 35 35 H 1.07994 * 120.00390 * 359.94864 * 6 5 4 36 36 H 1.07998 * 120.00128 * 180.02562 * 8 7 6 37 37 H 1.08006 * 119.99546 * 179.97438 * 9 8 7 38 38 H 1.08005 * 119.87324 * 0.02562 * 15 14 11 39 39 H 1.08004 * 119.75043 * 179.97438 * 16 15 14 40 40 H 1.08004 * 119.87525 * 179.97438 * 17 16 15 41 41 H 1.07992 * 120.12970 * 179.97438 * 18 17 16 42 42 H 0.97001 * 119.99511 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.3435 1.7733 -1.4371 5 6 3.0975 3.0781 -1.4371 6 6 4.2384 3.2180 -2.2077 7 7 4.8991 4.3623 -2.2081 8 6 4.4701 5.3733 -1.4731 9 6 3.3295 5.2333 -0.7028 10 7 2.6661 4.0904 -0.7058 11 16 2.2931 -1.4341 0.0006 12 8 1.3596 -2.4362 0.3796 13 8 3.5060 -1.1967 0.7018 14 6 2.7421 -1.7778 -1.6681 15 6 4.0669 -1.7773 -2.0412 16 6 4.4230 -2.0479 -3.3532 17 6 3.4516 -2.3213 -4.3040 18 6 2.1209 -2.3262 -3.9538 19 6 1.7481 -2.0595 -2.6232 20 6 0.3842 -2.0680 -2.2504 21 1 0.0969 -2.3924 -1.2611 22 6 -0.5934 -1.6564 -3.1633 23 7 -0.2408 -1.0811 -4.2841 24 14 -2.4016 -1.9282 -2.7814 25 1 -2.7560 -1.2128 -1.5293 26 1 -3.2276 -1.4066 -3.8997 27 1 -2.6586 -3.3809 -2.6112 28 1 -0.3634 0.0927 1.0235 29 1 -0.3634 0.8400 -0.5920 30 1 -0.3633 -0.9328 -0.4314 31 1 1.6500 2.0044 0.5894 32 1 3.1857 1.1178 0.4342 33 1 2.8909 1.0378 -2.0265 34 1 1.3552 1.9243 -1.8713 35 1 4.5890 2.3918 -2.8084 36 1 5.0099 6.3087 -1.4737 37 1 2.9791 6.0595 -0.1017 38 1 4.8320 -1.5661 -1.3087 39 1 5.4651 -2.0450 -3.6372 40 1 3.7404 -2.5303 -5.3235 41 1 1.3658 -2.5389 -4.6961 42 1 -0.9185 -0.7955 -4.9167 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601386215.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:14:21 Heat of formation + Delta-G solvation = -23.761937 kcal Electronic energy + Delta-G solvation = -29126.587809 eV Core-core repulsion = 25197.797316 eV Total energy + Delta-G solvation = -3928.790493 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.01319 -39.37679 -38.18527 -37.77397 -36.70281 -35.62919 -35.30955 -33.80492 -31.98227 -31.34933 -30.41087 -27.61149 -26.96378 -25.67193 -24.80250 -23.46764 -22.90387 -22.62103 -19.77441 -19.41636 -18.73267 -18.52594 -17.86367 -17.71574 -17.18567 -17.12757 -16.61399 -16.04910 -15.91165 -15.53826 -15.06200 -15.00995 -14.85210 -14.63016 -14.39987 -14.28721 -13.83569 -13.64199 -13.41275 -13.23533 -13.09894 -12.99680 -12.95701 -12.87255 -12.78577 -12.56555 -12.45848 -12.22510 -12.14413 -12.03529 -11.81123 -11.60013 -11.13840 -10.97680 -10.30997 -10.03966 -9.83782 -9.68402 -9.35049 -8.73921 -6.57677 -0.21949 -0.14567 0.17218 0.55967 1.01060 1.41569 1.50162 1.52683 2.18703 2.21992 2.67138 2.74759 2.99491 3.11681 3.37285 3.48468 3.55733 3.70190 3.80893 4.00156 4.12976 4.30626 4.35268 4.42468 4.48816 4.52596 4.59886 4.65519 4.73551 4.80291 4.83361 5.00717 5.07117 5.15180 5.23115 5.26282 5.31620 5.48593 5.57403 5.71001 5.81294 5.90916 6.02881 6.17910 6.32720 6.55206 6.76086 6.83849 6.86356 8.22546 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.010178 B = 0.004668 C = 0.004461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2750.287486 B = 5996.460500 C = 6274.868701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.989 5.989 3 C 0.135 3.865 4 C -0.082 4.082 5 C 0.082 3.918 6 C 0.039 3.961 7 N -0.459 5.459 8 C 0.042 3.958 9 C 0.057 3.943 10 N -0.455 5.455 11 S 2.712 3.288 12 O -0.997 6.997 13 O -1.008 7.008 14 C -0.785 4.785 15 C -0.017 4.017 16 C -0.243 4.243 17 C -0.075 4.075 18 C -0.178 4.178 19 C 0.175 3.825 20 C -0.501 4.501 21 H 0.108 0.892 22 C 0.058 3.942 23 N -0.802 5.802 24 Si 0.951 3.049 25 H -0.240 1.240 26 H -0.265 1.265 27 H -0.266 1.266 28 H 0.067 0.933 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.105 0.895 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.086 0.914 35 H 0.169 0.831 36 H 0.207 0.793 37 H 0.209 0.791 38 H 0.119 0.881 39 H 0.126 0.874 40 H 0.120 0.880 41 H 0.108 0.892 42 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.473 11.965 2.986 12.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.826 5.826 3 C 0.009 3.991 4 C -0.122 4.122 5 C -0.058 4.058 6 C -0.119 4.119 7 N -0.173 5.173 8 C -0.119 4.119 9 C -0.104 4.104 10 N -0.171 5.171 11 S 2.810 3.190 12 O -0.988 6.988 13 O -0.999 6.999 14 C -0.879 4.879 15 C -0.037 4.037 16 C -0.263 4.263 17 C -0.094 4.094 18 C -0.198 4.198 19 C 0.171 3.829 20 C -0.529 4.529 21 H 0.126 0.874 22 C -0.161 4.161 23 N -0.426 5.426 24 Si 0.771 3.229 25 H -0.163 1.163 26 H -0.190 1.190 27 H -0.190 1.190 28 H 0.085 0.915 29 H 0.096 0.904 30 H 0.097 0.903 31 H 0.123 0.877 32 H 0.097 0.903 33 H 0.095 0.905 34 H 0.105 0.895 35 H 0.186 0.814 36 H 0.223 0.777 37 H 0.225 0.775 38 H 0.137 0.863 39 H 0.144 0.856 40 H 0.138 0.862 41 H 0.126 0.874 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 1.520 11.574 3.543 12.199 hybrid contribution -0.613 -0.291 -1.191 1.370 sum 0.907 11.283 2.353 11.561 Atomic orbital electron populations 1.21883 0.77524 1.04707 1.02163 1.57065 1.15587 1.20248 1.89663 1.21222 0.97176 0.85088 0.95576 1.20866 1.00821 0.91317 0.99191 1.22039 0.94393 0.95538 0.93803 1.23731 0.93049 0.96801 0.98314 1.68485 1.30236 1.00373 1.18218 1.24441 0.95767 0.99141 0.92531 1.24467 0.92652 0.95909 0.97327 1.68259 1.30805 1.00374 1.17621 1.00644 0.71619 0.72450 0.74276 1.93426 1.63747 1.57934 1.83684 1.93407 1.47283 1.85962 1.73206 1.30154 1.01379 1.32554 1.23800 1.20533 0.93530 0.93122 0.96484 1.20864 0.98882 1.13172 0.93365 1.21228 0.93276 0.96200 0.98704 1.21477 0.95196 1.05792 0.97371 1.17248 0.91880 0.82774 0.91035 1.20492 0.91204 1.38954 1.02281 0.87404 1.26503 1.05023 0.91315 0.93302 1.69800 1.38411 1.26210 1.08156 0.85689 0.76524 0.80279 0.80373 1.16297 1.18954 1.19026 0.91486 0.90407 0.90273 0.87651 0.90327 0.90497 0.89521 0.81387 0.77652 0.77461 0.86312 0.85618 0.86193 0.87414 0.89578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.75 9.94 127.77 1.27 4.02 16 2 N -0.99 -36.18 3.18 -539.12 -1.71 -37.89 16 3 C 0.14 4.29 5.56 86.38 0.48 4.77 16 4 C -0.08 -2.58 5.95 29.85 0.18 -2.41 16 5 C 0.08 2.32 6.17 42.55 0.26 2.58 16 6 C 0.04 1.09 10.85 84.68 0.92 2.01 16 7 N -0.46 -11.66 10.50 -195.22 -2.05 -13.71 16 8 C 0.04 0.75 11.22 84.67 0.95 1.70 16 9 C 0.06 1.03 11.22 84.67 0.95 1.98 16 10 N -0.45 -11.54 10.06 -183.29 -1.84 -13.38 16 11 S 2.71 118.75 5.10 -56.49 -0.29 118.46 16 12 O -1.00 -48.32 14.56 -128.00 -1.86 -50.19 16 13 O -1.01 -45.50 15.69 -128.00 -2.01 -47.51 16 14 C -0.78 -36.28 5.71 22.73 0.13 -36.15 16 15 C -0.02 -0.73 9.53 22.22 0.21 -0.52 16 16 C -0.24 -9.78 10.05 22.46 0.23 -9.56 16 17 C -0.08 -3.17 10.02 22.22 0.22 -2.95 16 18 C -0.18 -8.52 8.63 22.73 0.20 -8.33 16 19 C 0.18 8.60 5.50 -21.29 -0.12 8.48 16 20 C -0.50 -24.09 6.29 23.46 0.15 -23.94 16 21 H 0.11 5.30 4.12 -2.91 -0.01 5.29 16 22 C 0.06 2.56 5.24 85.26 0.45 3.01 16 23 N -0.80 -36.45 11.10 21.83 0.24 -36.21 16 24 Si 0.95 34.15 29.41 68.60 2.02 36.17 16 25 H -0.24 -7.97 7.11 99.48 0.71 -7.26 16 26 H -0.27 -8.99 7.11 99.48 0.71 -8.28 16 27 H -0.27 -9.83 7.11 99.48 0.71 -9.12 16 28 H 0.07 1.90 8.14 -2.38 -0.02 1.88 16 29 H 0.08 2.33 8.11 -2.39 -0.02 2.31 16 30 H 0.08 3.03 4.13 -2.38 -0.01 3.02 16 31 H 0.11 2.90 7.93 -2.39 -0.02 2.88 16 32 H 0.08 2.57 7.03 -2.39 -0.02 2.55 16 33 H 0.08 2.71 7.63 -2.39 -0.02 2.69 16 34 H 0.09 2.84 8.14 -2.39 -0.02 2.83 16 35 H 0.17 4.52 7.95 -2.91 -0.02 4.50 16 36 H 0.21 1.87 8.06 -2.91 -0.02 1.84 16 37 H 0.21 1.85 8.06 -2.91 -0.02 1.83 16 38 H 0.12 4.74 7.32 -2.91 -0.02 4.72 16 39 H 0.13 4.23 8.06 -2.91 -0.02 4.21 16 40 H 0.12 4.30 8.06 -2.91 -0.02 4.28 16 41 H 0.11 5.30 6.53 -2.91 -0.02 5.28 16 42 H 0.29 12.14 8.30 -92.71 -0.77 11.37 16 Total: -1.00 -62.77 360.39 0.03 -62.75 By element: Atomic # 1 Polarization: 35.74 SS G_CDS: 1.06 Total: 36.80 kcal Atomic # 6 Polarization: -61.76 SS G_CDS: 6.47 Total: -55.29 kcal Atomic # 7 Polarization: -95.83 SS G_CDS: -5.36 Total: -101.19 kcal Atomic # 8 Polarization: -93.82 SS G_CDS: -3.87 Total: -97.69 kcal Atomic # 14 Polarization: 34.15 SS G_CDS: 2.02 Total: 36.17 kcal Atomic # 16 Polarization: 118.75 SS G_CDS: -0.29 Total: 118.46 kcal Total: -62.77 0.03 -62.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601386215.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.984 kcal (2) G-P(sol) polarization free energy of solvation -62.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds