Wall clock time and date at job start Wed Apr 1 2020 04:21:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35905 * 116.99604 * 2 1 4 4 C 1.38723 * 120.05884 * 359.72201 * 3 2 1 5 5 C 1.38145 * 119.94323 * 179.77076 * 4 3 2 6 6 C 1.38260 * 120.05692 * 0.50972 * 5 4 3 7 7 C 1.50706 * 119.94706 * 179.76915 * 6 5 4 8 8 N 1.46504 * 109.46991 * 269.97688 * 7 6 5 9 9 N 1.40063 * 126.04496 * 90.02312 * 8 7 6 10 10 C 1.30849 * 108.37002 * 179.97438 * 9 8 7 11 11 C 1.39758 * 108.32709 * 0.02562 * 10 9 8 12 12 C 1.35258 * 126.04073 * 269.71166 * 8 7 6 13 13 N 1.39465 * 126.22262 * 0.02562 * 12 8 7 14 14 C 1.34781 * 120.00483 * 180.02562 * 13 12 8 15 15 O 1.21290 * 119.99470 * 359.97438 * 14 13 12 16 16 C 1.50699 * 120.00162 * 179.97438 * 14 13 12 17 17 S 1.80997 * 109.46802 * 179.97438 * 16 14 13 18 18 C 1.76204 * 100.00104 * 179.97438 * 17 16 14 19 19 H 1.08001 * 119.99301 * 0.02562 * 18 17 16 20 20 C 1.38798 * 120.00410 * 180.02562 * 18 17 16 21 21 N 1.31628 * 119.99805 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00261 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47246 * 89.99531 * 22 20 18 24 24 H 1.48497 * 109.47258 * 210.00073 * 22 20 18 25 25 H 1.48508 * 109.46915 * 329.99907 * 22 20 18 26 26 C 1.38268 * 120.10972 * 359.74026 * 6 5 4 27 27 C 1.38139 * 120.05510 * 0.02562 * 26 6 5 28 28 H 1.08996 * 109.46732 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47144 * 300.00205 * 1 2 3 30 30 H 1.08998 * 109.47043 * 59.99803 * 1 2 3 31 31 H 1.08001 * 120.02769 * 0.02562 * 4 3 2 32 32 H 1.08006 * 119.97076 * 180.25587 * 5 4 3 33 33 H 1.09001 * 109.46891 * 29.97509 * 7 6 5 34 34 H 1.08994 * 109.47121 * 149.97471 * 7 6 5 35 35 H 1.08004 * 125.83792 * 180.02562 * 10 9 8 36 36 H 1.07998 * 126.08932 * 180.02562 * 11 10 9 37 37 H 0.97004 * 120.00070 * 359.97438 * 13 12 8 38 38 H 1.08995 * 109.47324 * 299.99680 * 16 14 13 39 39 H 1.08998 * 109.47304 * 60.00008 * 16 14 13 40 40 H 0.96994 * 120.00013 * 179.97438 * 21 20 18 41 41 H 1.08008 * 119.97007 * 179.97438 * 26 6 5 42 42 H 1.08001 * 120.02451 * 179.97438 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2915 2.3751 -0.0058 5 6 1.9210 3.6048 -0.0010 6 6 3.3018 3.6758 -0.0011 7 6 3.9860 5.0186 -0.0011 8 7 4.2082 5.4535 -1.3824 9 7 3.3243 6.2126 -2.1597 10 6 3.8675 6.4027 -3.3348 11 6 5.1147 5.7723 -3.3496 12 6 5.3057 5.1978 -2.1304 13 7 6.4275 4.4738 -1.7273 14 6 7.4561 4.2947 -2.5796 15 8 7.4059 4.7628 -3.6974 16 6 8.6684 3.5129 -2.1437 17 16 9.8646 3.4485 -3.5005 18 6 11.1424 2.5053 -2.7375 19 1 11.0257 2.1614 -1.7204 20 6 12.2989 2.2043 -3.4435 21 7 12.4409 2.6230 -4.6833 22 14 13.6532 1.2037 -2.6348 23 1 13.4198 -0.2409 -2.8878 24 1 14.9672 1.5996 -3.2021 25 1 13.6492 1.4569 -1.1715 26 6 4.0560 2.5170 -0.0005 27 6 3.4313 1.2849 -0.0004 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 0.2129 2.3201 -0.0099 32 1 1.3341 4.5114 -0.0014 33 1 3.3578 5.7465 0.5124 34 1 4.9437 4.9384 0.5131 35 1 3.4272 6.9526 -4.1535 36 1 5.8063 5.7495 -4.1788 37 1 6.4677 4.0998 -0.8332 38 1 9.1233 3.9989 -1.2807 39 1 8.3700 2.4997 -1.8746 40 1 13.2492 2.4130 -5.1766 41 1 5.1345 2.5751 -0.0009 42 1 4.0209 0.3801 -0.0004 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603621628.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:58 Heat of formation + Delta-G solvation = 43.240076 kcal Electronic energy + Delta-G solvation = -26664.793007 eV Core-core repulsion = 22738.907939 eV Total energy + Delta-G solvation = -3925.885068 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.48835 -40.45272 -39.17702 -38.05221 -34.82301 -33.75350 -32.49260 -31.49230 -30.47740 -30.11804 -28.03567 -27.93074 -25.91040 -25.54861 -23.15543 -22.14000 -22.03429 -20.76116 -19.77426 -18.66165 -18.25190 -17.55949 -16.67272 -16.41191 -16.30084 -16.12062 -15.45471 -15.17295 -14.85869 -14.83093 -14.42322 -14.23936 -14.04809 -13.84442 -13.69121 -13.57615 -13.09552 -12.93944 -12.67573 -12.47192 -12.42785 -12.23171 -12.02561 -11.46812 -11.18698 -11.11916 -11.08802 -10.84304 -10.83918 -10.60980 -9.89927 -9.56316 -9.37504 -9.12599 -8.99961 -8.55085 -8.35103 -7.96844 -6.59073 -6.27965 -3.99957 0.86892 0.99163 1.82355 2.18521 2.79806 2.85634 2.91159 3.18847 3.20470 3.22199 3.26790 3.41948 3.53746 4.13114 4.20975 4.34738 4.44795 4.50758 4.70097 4.73036 4.77078 4.89340 5.01640 5.03493 5.06000 5.07692 5.21052 5.27536 5.41708 5.62063 5.64835 5.68175 5.69520 5.83290 5.95347 5.95654 6.06194 6.17008 6.27919 6.33766 6.84424 6.98178 7.03572 7.33453 7.53604 7.83344 8.26162 8.28805 9.17523 10.79406 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.011065 B = 0.002533 C = 0.002163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2529.903059 B =11050.035826 C =12939.194343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.316 6.316 3 C 0.136 3.864 4 C -0.211 4.211 5 C -0.048 4.048 6 C -0.155 4.155 7 C 0.179 3.821 8 N -0.387 5.387 9 N -0.299 5.299 10 C 0.060 3.940 11 C -0.284 4.284 12 C 0.318 3.682 13 N -0.656 5.656 14 C 0.538 3.462 15 O -0.478 6.478 16 C -0.151 4.151 17 S -0.051 6.051 18 C -0.538 4.538 19 H 0.074 0.926 20 C 0.074 3.926 21 N -0.866 5.866 22 Si 0.920 3.080 23 H -0.276 1.276 24 H -0.282 1.282 25 H -0.272 1.272 26 C -0.060 4.060 27 C -0.150 4.150 28 H 0.101 0.899 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.130 0.870 32 H 0.129 0.871 33 H 0.105 0.895 34 H 0.093 0.907 35 H 0.183 0.817 36 H 0.174 0.826 37 H 0.405 0.595 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.269 0.731 41 H 0.126 0.874 42 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.636 0.335 13.087 27.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.229 6.229 3 C 0.091 3.909 4 C -0.229 4.229 5 C -0.066 4.066 6 C -0.156 4.156 7 C 0.057 3.943 8 N -0.175 5.175 9 N -0.121 5.121 10 C -0.126 4.126 11 C -0.316 4.316 12 C 0.098 3.902 13 N -0.305 5.305 14 C 0.324 3.676 15 O -0.347 6.347 16 C -0.302 4.302 17 S 0.175 5.825 18 C -0.686 4.686 19 H 0.092 0.908 20 C -0.135 4.135 21 N -0.501 5.501 22 Si 0.746 3.254 23 H -0.202 1.202 24 H -0.207 1.207 25 H -0.197 1.197 26 C -0.079 4.079 27 C -0.169 4.169 28 H 0.119 0.881 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.147 0.853 32 H 0.147 0.853 33 H 0.124 0.876 34 H 0.112 0.888 35 H 0.200 0.800 36 H 0.191 0.809 37 H 0.240 0.760 38 H 0.114 0.886 39 H 0.114 0.886 40 H 0.079 0.921 41 H 0.144 0.856 42 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -24.461 1.091 11.903 27.225 hybrid contribution 1.337 -1.500 1.801 2.698 sum -23.124 -0.409 13.704 26.883 Atomic orbital electron populations 1.23085 0.78191 1.04124 1.01444 1.86095 1.21573 1.26867 1.88402 1.19106 0.92414 0.84233 0.95186 1.21235 1.00167 0.92216 1.09321 1.20826 0.93625 0.97300 0.94893 1.19916 0.94239 0.94550 1.06907 1.20372 1.01587 0.93307 0.78990 1.48646 1.12583 1.44404 1.11852 1.77366 1.14496 1.15481 1.04747 1.23744 0.94301 0.99030 0.95479 1.21734 1.01100 1.10327 0.98416 1.18101 0.83677 0.96279 0.92129 1.43186 1.15490 1.53886 1.17979 1.20499 0.82545 0.79943 0.84566 1.90662 1.78511 1.46198 1.19369 1.23528 0.97292 1.01775 1.07566 1.85470 1.12238 1.71370 1.13395 1.22844 1.03950 1.39595 1.02223 0.90786 1.24993 0.97863 0.95814 0.94847 1.70003 1.27675 1.43237 1.09198 0.86152 0.80127 0.79845 0.79290 1.20220 1.20712 1.19668 1.20832 0.99590 0.91148 0.96334 1.20433 0.91477 0.98764 1.06210 0.88081 0.92565 0.92504 0.85251 0.85335 0.87639 0.88840 0.79960 0.80876 0.75999 0.88606 0.88618 0.92065 0.85600 0.84699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.81 101.05 0.99 1.14 16 2 O -0.32 -3.06 10.50 -19.44 -0.20 -3.27 16 3 C 0.14 1.38 6.69 -39.22 -0.26 1.12 16 4 C -0.21 -1.88 9.04 -39.44 -0.36 -2.24 16 5 C -0.05 -0.44 9.69 -39.61 -0.38 -0.82 16 6 C -0.15 -1.46 5.46 -104.60 -0.57 -2.03 16 7 C 0.18 1.59 6.38 -5.19 -0.03 1.56 16 8 N -0.39 -4.88 3.60 -61.57 -0.22 -5.10 16 9 N -0.30 -4.12 12.56 30.60 0.38 -3.74 16 10 C 0.06 0.82 12.01 -17.40 -0.21 0.61 16 11 C -0.28 -4.50 9.65 -39.78 -0.38 -4.88 16 12 C 0.32 4.63 7.66 -153.17 -1.17 3.46 16 13 N -0.66 -8.85 5.41 -11.46 -0.06 -8.91 16 14 C 0.54 9.43 7.81 -10.98 -0.09 9.34 16 15 O -0.48 -10.08 12.99 5.55 0.07 -10.01 16 16 C -0.15 -2.79 6.16 36.01 0.22 -2.57 16 17 S -0.05 -1.32 20.57 -107.50 -2.21 -3.53 16 18 C -0.54 -14.71 9.50 30.94 0.29 -14.42 16 19 H 0.07 1.90 7.80 -52.49 -0.41 1.49 16 20 C 0.07 2.06 5.49 -17.43 -0.10 1.97 16 21 N -0.87 -25.46 13.22 55.49 0.73 -24.72 16 22 Si 0.92 20.84 29.55 -169.99 -5.02 15.81 16 23 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 24 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 25 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 26 C -0.06 -0.57 9.69 -39.61 -0.38 -0.95 16 27 C -0.15 -1.52 9.99 -39.44 -0.39 -1.92 16 28 H 0.10 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.25 7.67 -51.93 -0.40 -0.15 16 30 H 0.06 0.29 7.65 -51.93 -0.40 -0.11 16 31 H 0.13 0.87 6.30 -52.49 -0.33 0.54 16 32 H 0.13 1.02 8.06 -52.48 -0.42 0.60 16 33 H 0.11 0.79 8.08 -51.93 -0.42 0.37 16 34 H 0.09 0.62 7.43 -51.93 -0.39 0.24 16 35 H 0.18 1.84 8.06 -52.48 -0.42 1.41 16 36 H 0.17 3.08 5.83 -52.49 -0.31 2.77 16 37 H 0.40 3.96 7.16 -40.82 -0.29 3.67 16 38 H 0.10 1.59 8.14 -51.92 -0.42 1.17 16 39 H 0.10 1.59 8.14 -51.92 -0.42 1.17 16 40 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 41 H 0.13 0.98 7.27 -52.48 -0.38 0.60 16 42 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 LS Contribution 376.89 15.07 5.68 5.68 Total: -1.00 -35.37 376.89 -8.67 -44.04 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -4.99 Total: 4.38 kcal Atomic # 6 Polarization: -7.81 SS G_CDS: -2.83 Total: -10.63 kcal Atomic # 7 Polarization: -43.31 SS G_CDS: 0.83 Total: -42.47 kcal Atomic # 8 Polarization: -13.15 SS G_CDS: -0.13 Total: -13.28 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.81 kcal Atomic # 16 Polarization: -1.32 SS G_CDS: -2.21 Total: -3.53 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.37 -8.67 -44.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603621628.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.281 kcal (2) G-P(sol) polarization free energy of solvation -35.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.041 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds